RNA–Protein interactions for RNA: ENST00000318024.8

USH1C-202, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USH1C, Length 2,237 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-202ENST00000318024 BCANQ96GW7 911 aa22.25■■□□□ 1.15
USH1C-202ENST00000318024 DIP2BQ9P265 1576 aa22.24■■□□□ 1.15
USH1C-202ENST00000318024 NEO1Q92859 1461 aa22.24■■□□□ 1.15
USH1C-202ENST00000318024 FAM135AQ9P2D6 1515 aa22.24■■□□□ 1.15
USH1C-202ENST00000318024 KIF3BO15066 747 aa22.24■■□□□ 1.15
USH1C-202ENST00000318024 GLI2P10070 1586 aa22.23■■□□□ 1.15
USH1C-202ENST00000318024 KDM5DQ9BY66 1539 aa22.23■■□□□ 1.15
USH1C-202ENST00000318024 CFAP74Q9C0B2 1584 aa22.23■■□□□ 1.15
USH1C-202ENST00000318024 INO80Q9ULG1 1556 aaPredicted RBP22.23■■□□□ 1.15
USH1C-202ENST00000318024 RPRD2Q5VT52 1461 aaKnown RBP22.21■■□□□ 1.15
USH1C-202ENST00000318024 DHX29Q7Z478 1369 aaKnown RBP22.2■■□□□ 1.14
USH1C-202ENST00000318024 KIDINS220Q9ULH0 1771 aa22.18■■□□□ 1.14
USH1C-202ENST00000318024 UNC13BO14795 1591 aa22.18■■□□□ 1.14
USH1C-202ENST00000318024 TSPOAP1O95153 1857 aa22.18■■□□□ 1.14
USH1C-202ENST00000318024 HIRIP3Q9BW71 556 aaPredicted RBP22.16■■□□□ 1.14
USH1C-202ENST00000318024 RBM19Q9Y4C8 960 aaKnown RBP22.16■■□□□ 1.14
USH1C-202ENST00000318024 KDM5CP41229 1560 aa22.16■■□□□ 1.14
USH1C-202ENST00000318024 MLH3Q9UHC1 1453 aa22.14■■□□□ 1.14
USH1C-202ENST00000318024 MAGI2Q86UL8 1455 aa22.12■■□□□ 1.13
USH1C-202ENST00000318024 A2MP01023 1474 aa22.12■■□□□ 1.13
USH1C-202ENST00000318024 GGT6Q6P531 493 aa22.11■■□□□ 1.13
USH1C-202ENST00000318024 HECW2Q9P2P5 1572 aa22.1■■□□□ 1.13
USH1C-202ENST00000318024 IQGAP3Q86VI3 1631 aa22.1■■□□□ 1.13
USH1C-202ENST00000318024 ANP32CO43423 234 aa22.1■■□□□ 1.13
USH1C-202ENST00000318024 TEX14Q8IWB6 1497 aa22.09■■□□□ 1.13
USH1C-202ENST00000318024 NBPF8Q3BBV2 869 aa22.08■■□□□ 1.13
USH1C-202ENST00000318024 NEFLP07196 543 aa22.08■■□□□ 1.13
USH1C-202ENST00000318024 PLA2R1Q13018 1463 aa22.08■■□□□ 1.12
USH1C-202ENST00000318024 ZNF326Q5BKZ1 582 aaKnown RBP22.07■■□□□ 1.12
USH1C-202ENST00000318024 KANK1Q14678 1352 aa22.07■■□□□ 1.12
USH1C-202ENST00000318024 YEATS2Q9ULM3 1422 aa22.07■■□□□ 1.12
USH1C-202ENST00000318024 PPRC1Q5VV67 1664 aaKnown RBP22.07■■□□□ 1.12
USH1C-202ENST00000318024 RGL3Q3MIN7 710 aa22.06■■□□□ 1.12
USH1C-202ENST00000318024 CCDC144AA2RUR9 1427 aa22.05■■□□□ 1.12
USH1C-202ENST00000318024 KDM2AQ9Y2K7 1162 aa22.05■■□□□ 1.12
USH1C-202ENST00000318024 RICTORQ6R327 1708 aa22.05■■□□□ 1.12
USH1C-202ENST00000318024 ABCA6Q8N139 1617 aa22.05■■□□□ 1.12
USH1C-202ENST00000318024 KIF13AQ9H1H9 1805 aa22.04■■□□□ 1.12
USH1C-202ENST00000318024 FRMPD1Q5SYB0 1578 aa22.04■■□□□ 1.12
USH1C-202ENST00000318024 DEPDC5O75140 1603 aa22.02■■□□□ 1.12
USH1C-202ENST00000318024 DCAF11Q8TEB1 546 aa22.02■■□□□ 1.11
USH1C-202ENST00000318024 BCL11AQ9H165 835 aa22.02■■□□□ 1.11
USH1C-202ENST00000318024 EIF2AK4Q9P2K8 1649 aaKnown RBP22■■□□□ 1.11
USH1C-202ENST00000318024 COL17A1Q9UMD9 1497 aaPredicted RBP22■■□□□ 1.11
USH1C-202ENST00000318024 MROH1Q8NDA8 1641 aa22■■□□□ 1.11
USH1C-202ENST00000318024 DIP2CQ9Y2E4 1556 aa21.99■■□□□ 1.11
USH1C-202ENST00000318024 TRHP20396 242 aaPredicted RBP21.99■■□□□ 1.11
USH1C-202ENST00000318024 PRDM15P57071 1507 aaPredicted RBP21.98■■□□□ 1.11
USH1C-202ENST00000318024 WASHC2CQ9Y4E1 1318 aa21.97■■□□□ 1.11
USH1C-202ENST00000318024 VWDEQ8N2E2 1590 aa21.96■■□□□ 1.11
USH1C-202ENST00000318024 E9PCH4 1651 aa21.96■■□□□ 1.11
USH1C-202ENST00000318024 MSH5O43196 834 aa21.96■■□□□ 1.11
USH1C-202ENST00000318024 ATP10AO60312 1499 aa21.94■■□□□ 1.1
USH1C-202ENST00000318024 HSPA5P11021 654 aaKnown RBP21.94■■□□□ 1.1
USH1C-202ENST00000318024 DNAJC5Q9H3Z4 198 aa21.92■■□□□ 1.1
USH1C-202ENST00000318024 TET3O43151 1660 aa21.91■■□□□ 1.1
USH1C-202ENST00000318024 EIF4G2P78344 907 aaKnown RBP eCLIP21.91■■□□□ 1.1
USH1C-202ENST00000318024 ZMYM4Q5VZL5 1548 aa21.9■■□□□ 1.1
USH1C-202ENST00000318024 RNF17Q9BXT8 1623 aaKnown RBP21.9■■□□□ 1.1
USH1C-202ENST00000318024 PTPRTO14522 1441 aa21.89■■□□□ 1.09
USH1C-202ENST00000318024 FANCIQ9NVI1 1328 aa21.89■■□□□ 1.09
USH1C-202ENST00000318024 CEP152O94986 1710 aa21.87■■□□□ 1.09
USH1C-202ENST00000318024 MLECQ14165 292 aa21.86■■□□□ 1.09
USH1C-202ENST00000318024 EFCAB6Q5THR3 1501 aa21.86■■□□□ 1.09
USH1C-202ENST00000318024 NPATQ14207 1427 aa21.85■■□□□ 1.09
USH1C-202ENST00000318024 TRPM2O94759 1503 aa21.85■■□□□ 1.09
USH1C-202ENST00000318024 LMTK2Q8IWU2 1503 aa21.84■■□□□ 1.09
USH1C-202ENST00000318024 UGGT1Q9NYU2 1555 aa21.84■■□□□ 1.09
USH1C-202ENST00000318024 ABCC3O15438 1527 aa21.83■■□□□ 1.09
USH1C-202ENST00000318024 SPHKAPQ2M3C7 1700 aa21.83■■□□□ 1.09
USH1C-202ENST00000318024 UHRF1BP1Q6BDS2 1440 aa21.83■■□□□ 1.08
USH1C-202ENST00000318024 SPATA31E1Q6ZUB1 1445 aa21.82■■□□□ 1.08
USH1C-202ENST00000318024 BCORL1Q5H9F3 1711 aa21.81■■□□□ 1.08
USH1C-202ENST00000318024 CLTCL1P53675 1640 aa21.81■■□□□ 1.08
USH1C-202ENST00000318024 CARD11Q9BXL7 1154 aa21.81■■□□□ 1.08
USH1C-202ENST00000318024 WASHC2AQ641Q2 1341 aa21.81■■□□□ 1.08
USH1C-202ENST00000318024 CFAP65Q6ZU64 1925 aaKnown RBP21.8■■□□□ 1.08
USH1C-202ENST00000318024 CHGAP10645 457 aaKnown RBP21.8■■□□□ 1.08
USH1C-202ENST00000318024 HNRNPUQ00839 825 aaKnown RBP eCLIP21.8■■□□□ 1.08
USH1C-202ENST00000318024 ERICH6BQ5W0A0 696 aa21.8■■□□□ 1.08
USH1C-202ENST00000318024 NBPF1Q3BBV0 1214 aa21.79■■□□□ 1.08
USH1C-202ENST00000318024 C11orf95C9JLR9 678 aaPredicted RBP21.78■■□□□ 1.08
USH1C-202ENST00000318024 PRAG1Q86YV5 1406 aa21.78■■□□□ 1.08
USH1C-202ENST00000318024 ROCK2O75116 1388 aaKnown RBP21.76■■□□□ 1.07
USH1C-202ENST00000318024 USP47Q96K76 1375 aa21.75■■□□□ 1.07
USH1C-202ENST00000318024 ARID4BQ4LE39 1312 aaPredicted RBP21.75■■□□□ 1.07
USH1C-202ENST00000318024 RALGAPBQ86X10 1494 aa21.75■■□□□ 1.07
USH1C-202ENST00000318024 FBXO31Q5XUX0 539 aaPredicted RBP21.74■■□□□ 1.07
USH1C-202ENST00000318024 SIGLEC1Q9BZZ2 1709 aa21.74■■□□□ 1.07
USH1C-202ENST00000318024 CAMSAP1Q5T5Y3 1602 aa21.73■■□□□ 1.07
USH1C-202ENST00000318024 CNTLNQ9NXG0 1405 aa21.72■■□□□ 1.07
USH1C-202ENST00000318024 ARHGEF40Q8TER5 1519 aa21.71■■□□□ 1.07
USH1C-202ENST00000318024 IRX6P78412 446 aaPredicted RBP21.7■■□□□ 1.06
USH1C-202ENST00000318024 AGLP35573 1532 aa21.69■■□□□ 1.06
USH1C-202ENST00000318024 ST20-MTHFSA0A0A6YYL1 179 aa21.69■■□□□ 1.06
USH1C-202ENST00000318024 REREQ9P2R6 1566 aa21.69■■□□□ 1.06
USH1C-202ENST00000318024 IDI1Q13907 227 aa21.68■■□□□ 1.06
USH1C-202ENST00000318024 CCDC184Q52MB2 194 aa21.68■■□□□ 1.06
USH1C-202ENST00000318024 NOS1P29475 1434 aa21.68■■□□□ 1.06
USH1C-202ENST00000318024 ARHGAP31Q2M1Z3 1444 aa21.67■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms