RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 RNF17Q9BXT8 1623 aaKnown RBP25.4■■□□□ 1.66
LSM1-201ENST00000311351 EIF2AK4Q9P2K8 1649 aaKnown RBP25.4■■□□□ 1.66
LSM1-201ENST00000311351 MYO3AQ8NEV4 1616 aa25.37■■□□□ 1.65
LSM1-201ENST00000311351 FAM135AQ9P2D6 1515 aa25.37■■□□□ 1.65
LSM1-201ENST00000311351 PTPRKQ15262 1439 aa25.37■■□□□ 1.65
LSM1-201ENST00000311351 PPP6R1Q9UPN7 881 aa25.35■■□□□ 1.65
LSM1-201ENST00000311351 DUOX2Q9NRD8 1548 aa25.35■■□□□ 1.65
LSM1-201ENST00000311351 STRCQ7RTU9 1775 aa25.35■■□□□ 1.65
LSM1-201ENST00000311351 MROH1Q8NDA8 1641 aa25.34■■□□□ 1.65
LSM1-201ENST00000311351 KIF15Q9NS87 1388 aa25.33■■□□□ 1.65
LSM1-201ENST00000311351 ZNF142P52746 1687 aaPredicted RBP25.33■■□□□ 1.65
LSM1-201ENST00000311351 ZC3H13Q5T200 1668 aaKnown RBP25.3■■□□□ 1.64
LSM1-201ENST00000311351 CEP152O94986 1710 aa25.29■■□□□ 1.64
LSM1-201ENST00000311351 ABCC3O15438 1527 aa25.29■■□□□ 1.64
LSM1-201ENST00000311351 PZPP20742 1482 aa25.28■■□□□ 1.64
LSM1-201ENST00000311351 CEP170BQ9Y4F5 1589 aaPredicted RBP25.28■■□□□ 1.64
LSM1-201ENST00000311351 WASHC2CQ9Y4E1 1318 aa25.28■■□□□ 1.64
LSM1-201ENST00000311351 FAM50AQ14320 339 aaKnown RBP25.27■■□□□ 1.64
LSM1-201ENST00000311351 RRP7BPQ9NSQ0 103 aa25.27■■□□□ 1.64
LSM1-201ENST00000311351 ERBINQ96RT1 1412 aa25.27■■□□□ 1.64
LSM1-201ENST00000311351 CHIC2Q9UKJ5 165 aa25.26■■□□□ 1.63
LSM1-201ENST00000311351 PPARGC1BQ86YN6 1023 aaKnown RBP25.25■■□□□ 1.63
LSM1-201ENST00000311351 CAMSAP1Q5T5Y3 1602 aa25.25■■□□□ 1.63
LSM1-201ENST00000311351 PRDM15P57071 1507 aaPredicted RBP25.24■■□□□ 1.63
LSM1-201ENST00000311351 DEPDC5O75140 1603 aa25.23■■□□□ 1.63
LSM1-201ENST00000311351 ADGRL2O95490 1459 aa25.22■■□□□ 1.63
LSM1-201ENST00000311351 NCOA1Q15788 1441 aa25.22■■□□□ 1.63
LSM1-201ENST00000311351 ANKRD30AQ9BXX3 1397 aa25.22■■□□□ 1.63
LSM1-201ENST00000311351 FBXO31Q5XUX0 539 aaPredicted RBP25.22■■□□□ 1.63
LSM1-201ENST00000311351 TNRQ92752 1358 aa25.2■■□□□ 1.63
LSM1-201ENST00000311351 A2ML1A8K2U0 1454 aa25.18■■□□□ 1.62
LSM1-201ENST00000311351 ILDR1Q86SU0 546 aaPredicted RBP25.18■■□□□ 1.62
LSM1-201ENST00000311351 CFAP65Q6ZU64 1925 aaKnown RBP25.15■■□□□ 1.62
LSM1-201ENST00000311351 SPATA31D1Q6ZQQ2 1576 aa25.14■■□□□ 1.62
LSM1-201ENST00000311351 PLA2R1Q13018 1463 aa25.14■■□□□ 1.61
LSM1-201ENST00000311351 ERVK-7P63135 1459 aa25.13■■□□□ 1.61
LSM1-201ENST00000311351 PTPRTO14522 1441 aa25.12■■□□□ 1.61
LSM1-201ENST00000311351 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.11■■□□□ 1.618e-6■□□□□ 10.1
LSM1-201ENST00000311351 DMRT2Q9Y5R5 561 aa25.11■■□□□ 1.61
LSM1-201ENST00000311351 VWDEQ8N2E2 1590 aa25.1■■□□□ 1.61
LSM1-201ENST00000311351 NLRP1Q9C000 1473 aa25.09■■□□□ 1.61
LSM1-201ENST00000311351 NCKAP5LQ9HCH0 1330 aa25.09■■□□□ 1.61
LSM1-201ENST00000311351 POLR1AO95602 1720 aaPredicted RBP25.08■■□□□ 1.61
LSM1-201ENST00000311351 ANKRD50Q9ULJ7 1429 aa25.07■■□□□ 1.6
LSM1-201ENST00000311351 KANK1Q14678 1352 aa25.06■■□□□ 1.6
LSM1-201ENST00000311351 UGGT1Q9NYU2 1555 aa25.05■■□□□ 1.6
LSM1-201ENST00000311351 LMTK2Q8IWU2 1503 aa25.05■■□□□ 1.6
LSM1-201ENST00000311351 ARHGAP31Q2M1Z3 1444 aa25.04■■□□□ 1.6
LSM1-201ENST00000311351 NEURL4Q96JN8 1562 aa25.02■■□□□ 1.6
LSM1-201ENST00000311351 ITGAEP38570 1179 aa25.02■■□□□ 1.6
LSM1-201ENST00000311351 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.02■■□□□ 1.6
LSM1-201ENST00000311351 EFCAB6Q5THR3 1501 aa25.02■■□□□ 1.6
LSM1-201ENST00000311351 ROCK1Q13464 1354 aa25.01■■□□□ 1.59
LSM1-201ENST00000311351 UNC13BO14795 1591 aa25.01■■□□□ 1.59
LSM1-201ENST00000311351 PKD2Q13563 968 aa25■■□□□ 1.59
LSM1-201ENST00000311351 FBXO41Q8TF61 875 aa25■■□□□ 1.59
LSM1-201ENST00000311351 UBR1Q8IWV7 1749 aa24.99■■□□□ 1.59
LSM1-201ENST00000311351 CERKQ8TCT0 537 aa24.99■■□□□ 1.59
LSM1-201ENST00000311351 RRBP1Q9P2E9 1410 aaKnown RBP24.99■■□□□ 1.59
LSM1-201ENST00000311351 LTBP4Q8N2S1 1624 aa24.98■■□□□ 1.59
LSM1-201ENST00000311351 TET3O43151 1660 aa24.95■■□□□ 1.58
LSM1-201ENST00000311351 PIK3C2BO00750 1634 aa24.95■■□□□ 1.58
LSM1-201ENST00000311351 SYNMO15061 1565 aa24.95■■□□□ 1.58
LSM1-201ENST00000311351 THEMISQ8N1K5 641 aaPredicted RBP24.93■■□□□ 1.58
LSM1-201ENST00000311351 GCC2Q8IWJ2 1684 aa24.93■■□□□ 1.58
LSM1-201ENST00000311351 ZNF335Q9H4Z2 1342 aaPredicted RBP24.9■■□□□ 1.58
LSM1-201ENST00000311351 IQGAP3Q86VI3 1631 aa24.9■■□□□ 1.58
LSM1-201ENST00000311351 IQGAP1P46940 1657 aa24.88■■□□□ 1.57
LSM1-201ENST00000311351 NOS1P29475 1434 aa24.88■■□□□ 1.57
LSM1-201ENST00000311351 ANKLE2Q86XL3 938 aa24.87■■□□□ 1.57
LSM1-201ENST00000311351 E9PCH4 1651 aa24.86■■□□□ 1.57
LSM1-201ENST00000311351 MED14O60244 1454 aa24.86■■□□□ 1.57
LSM1-201ENST00000311351 RPRD2Q5VT52 1461 aaKnown RBP24.86■■□□□ 1.57
LSM1-201ENST00000311351 NPHP4O75161 1426 aaPredicted RBP24.86■■□□□ 1.57
LSM1-201ENST00000311351 SLIT1O75093 1534 aa24.84■■□□□ 1.57
LSM1-201ENST00000311351 KDM5AP29375 1690 aaKnown RBP24.84■■□□□ 1.57
LSM1-201ENST00000311351 ARHGAP23Q9P227 1491 aa24.83■■□□□ 1.57
LSM1-201ENST00000311351 ADGRB3O60242 1522 aa24.82■■□□□ 1.56
LSM1-201ENST00000311351 SCAF11Q99590 1463 aaKnown RBP24.82■■□□□ 1.56
LSM1-201ENST00000311351 IQSEC2Q5JU85 1478 aa24.79■■□□□ 1.56
LSM1-201ENST00000311351 IDI1Q13907 227 aa24.79■■□□□ 1.56
LSM1-201ENST00000311351 MYO5BQ9ULV0 1848 aa24.79■■□□□ 1.56
LSM1-201ENST00000311351 NUP155O75694 1391 aa24.79■■□□□ 1.56
LSM1-201ENST00000311351 NAIPQ13075 1403 aa24.78■■□□□ 1.56
LSM1-201ENST00000311351 STAG3Q9UJ98 1225 aa24.76■■□□□ 1.55
LSM1-201ENST00000311351 TMEM2Q9UHN6 1383 aa24.76■■□□□ 1.55
LSM1-201ENST00000311351 LTKP29376 864 aa24.75■■□□□ 1.55
LSM1-201ENST00000311351 STRCP1A6NGW2 1772 aa24.74■■□□□ 1.55
LSM1-201ENST00000311351 CPS1P31327 1500 aa24.72■■□□□ 1.55
LSM1-201ENST00000311351 TXNDC2Q86VQ3 553 aa24.72■■□□□ 1.55
LSM1-201ENST00000311351 HFM1A2PYH4 1435 aa24.71■■□□□ 1.55
LSM1-201ENST00000311351 SLC52A1Q9NWF4 448 aa24.71■■□□□ 1.55
LSM1-201ENST00000311351 TMEM131LA2VDJ0 1609 aa24.71■■□□□ 1.55
LSM1-201ENST00000311351 SPHKAPQ2M3C7 1700 aa24.69■■□□□ 1.54
LSM1-201ENST00000311351 EID1Q9Y6B2 187 aa24.68■■□□□ 1.54
LSM1-201ENST00000311351 ZFYVE9O95405 1425 aa24.63■■□□□ 1.53
LSM1-201ENST00000311351 RIMS2Q9UQ26 1411 aa24.61■■□□□ 1.53
LSM1-201ENST00000311351 CHGAP10645 457 aaKnown RBP24.6■■□□□ 1.53
LSM1-201ENST00000311351 UBAP1LF5GYI3 381 aa24.59■■□□□ 1.53
LSM1-201ENST00000311351 LRRC7Q96NW7 1537 aa24.59■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms