RNA–Protein interactions for RNA: ENST00000308077.9

PTCD2-201, Transcript of pentatricopeptide repeat domain 2, humanhuman

TSL 1 (best)

Gene PTCD2, Length 2,195 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD2-201ENST00000308077 SCAPERQ9BY12 1400 aa10.27□□□□□ -0.77
PTCD2-201ENST00000308077 ANKRD50Q9ULJ7 1429 aa10.26□□□□□ -0.77
PTCD2-201ENST00000308077 ZFYVE16Q7Z3T8 1539 aa10.26□□□□□ -0.77
PTCD2-201ENST00000308077 DENND4BO75064 1496 aaPredicted RBP10.26□□□□□ -0.77
PTCD2-201ENST00000308077 INO80Q9ULG1 1556 aaPredicted RBP10.26□□□□□ -0.77
PTCD2-201ENST00000308077 RIMS1Q86UR5 1692 aaKnown RBP10.26□□□□□ -0.77
PTCD2-201ENST00000308077 AFAP1Q8N556 730 aa10.25□□□□□ -0.77
PTCD2-201ENST00000308077 NEO1Q92859 1461 aa10.25□□□□□ -0.77
PTCD2-201ENST00000308077 PREX1Q8TCU6 1659 aa10.25□□□□□ -0.77
PTCD2-201ENST00000308077 POTEAQ6S8J7 498 aa10.25□□□□□ -0.77
PTCD2-201ENST00000308077 RTEL1-TNFRSF6BF6WH68 1400 aa10.24□□□□□ -0.77
PTCD2-201ENST00000308077 SENP3-EIF4A1A0A087X0R7 540 aa10.24□□□□□ -0.77
PTCD2-201ENST00000308077 TRIM52Q96A61 297 aa10.24□□□□□ -0.77
PTCD2-201ENST00000308077 ATP7AQ04656 1500 aa10.23□□□□□ -0.77
PTCD2-201ENST00000308077 KDM5CP41229 1560 aa10.23□□□□□ -0.77
PTCD2-201ENST00000308077 DUOX2Q9NRD8 1548 aa10.23□□□□□ -0.77
PTCD2-201ENST00000308077 POGZQ7Z3K3 1410 aa10.23□□□□□ -0.77
PTCD2-201ENST00000308077 SPAG9O60271 1321 aaKnown RBP10.23□□□□□ -0.77
PTCD2-201ENST00000308077 PZPP20742 1482 aa10.23□□□□□ -0.77
PTCD2-201ENST00000308077 LRP5O75197 1615 aa10.22□□□□□ -0.77
PTCD2-201ENST00000308077 KIDINS220Q9ULH0 1771 aa10.22□□□□□ -0.77
PTCD2-201ENST00000308077 ZNF518AQ6AHZ1 1483 aa10.22□□□□□ -0.77
PTCD2-201ENST00000308077 RICTORQ6R327 1708 aa10.21□□□□□ -0.77
PTCD2-201ENST00000308077 KDM5DQ9BY66 1539 aa10.21□□□□□ -0.78
PTCD2-201ENST00000308077 UNC13BO14795 1591 aa10.21□□□□□ -0.78
PTCD2-201ENST00000308077 MPHOSPH9Q99550 1183 aa10.2□□□□□ -0.78
PTCD2-201ENST00000308077 ACIN1Q9UKV3 1341 aaKnown RBP10.2□□□□□ -0.78
PTCD2-201ENST00000308077 ERBINQ96RT1 1412 aa10.2□□□□□ -0.78
PTCD2-201ENST00000308077 FRMPD1Q5SYB0 1578 aa10.19□□□□□ -0.78
PTCD2-201ENST00000308077 SIN3AQ96ST3 1273 aa10.19□□□□□ -0.78
PTCD2-201ENST00000308077 PLPPR3Q6T4P5 718 aa10.18□□□□□ -0.78
PTCD2-201ENST00000308077 MAGI2Q86UL8 1455 aa10.18□□□□□ -0.78
PTCD2-201ENST00000308077 MLH3Q9UHC1 1453 aa10.18□□□□□ -0.78
PTCD2-201ENST00000308077 NUP155O75694 1391 aa10.17□□□□□ -0.78
PTCD2-201ENST00000308077 ABCA6Q8N139 1617 aa10.17□□□□□ -0.78
PTCD2-201ENST00000308077 RAPGEF3O95398 923 aa10.16□□□□□ -0.78
PTCD2-201ENST00000308077 SLC4A1APQ9BWU0 796 aaKnown RBP10.16□□□□□ -0.78
PTCD2-201ENST00000308077 FAM135AQ9P2D6 1515 aa10.16□□□□□ -0.78
PTCD2-201ENST00000308077 DEPDC5O75140 1603 aa10.16□□□□□ -0.78
PTCD2-201ENST00000308077 IQGAP3Q86VI3 1631 aa10.16□□□□□ -0.78
PTCD2-201ENST00000308077 EIF2AK4Q9P2K8 1649 aaKnown RBP10.16□□□□□ -0.78
PTCD2-201ENST00000308077 ANKRD30BQ9BXX2 1392 aa10.15□□□□□ -0.78
PTCD2-201ENST00000308077 YY1P25490 414 aa10.15□□□□□ -0.79
PTCD2-201ENST00000308077 NEUROD1Q13562 356 aa10.15□□□□□ -0.79
PTCD2-201ENST00000308077 MYT1LQ9UL68 1186 aa10.15□□□□□ -0.79
PTCD2-201ENST00000308077 DIP2CQ9Y2E4 1556 aa10.15□□□□□ -0.79
PTCD2-201ENST00000308077 SETBP1Q9Y6X0 1596 aa10.15□□□□□ -0.79
PTCD2-201ENST00000308077 DHX29Q7Z478 1369 aaKnown RBP10.14□□□□□ -0.79
PTCD2-201ENST00000308077 ZRANB1Q9UGI0 708 aa10.14□□□□□ -0.79
PTCD2-201ENST00000308077 ZMYM4Q5VZL5 1548 aa10.14□□□□□ -0.79
PTCD2-201ENST00000308077 MROH1Q8NDA8 1641 aa10.14□□□□□ -0.79
PTCD2-201ENST00000308077 A2MP01023 1474 aa10.13□□□□□ -0.79
PTCD2-201ENST00000308077 PKD2Q13563 968 aa10.13□□□□□ -0.79
PTCD2-201ENST00000308077 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.12□□□□□ -0.79
PTCD2-201ENST00000308077 VWDEQ8N2E2 1590 aa10.12□□□□□ -0.79
PTCD2-201ENST00000308077 PRDM15P57071 1507 aaPredicted RBP10.12□□□□□ -0.79
PTCD2-201ENST00000308077 RNF17Q9BXT8 1623 aaKnown RBP10.11□□□□□ -0.79
PTCD2-201ENST00000308077 TOM1O60784 492 aa10.1□□□□□ -0.79
PTCD2-201ENST00000308077 RPRD2Q5VT52 1461 aaKnown RBP10.1□□□□□ -0.79
PTCD2-201ENST00000308077 KIF3BO15066 747 aa10.09□□□□□ -0.79
PTCD2-201ENST00000308077 E9PCH4 1651 aa10.09□□□□□ -0.79
PTCD2-201ENST00000308077 TIMELESSQ9UNS1 1208 aa10.09□□□□□ -0.79
PTCD2-201ENST00000308077 TET3O43151 1660 aa10.08□□□□□ -0.8
PTCD2-201ENST00000308077 TONSLQ96HA7 1378 aa10.08□□□□□ -0.8
PTCD2-201ENST00000308077 CEP152O94986 1710 aa10.08□□□□□ -0.8
PTCD2-201ENST00000308077 PLA2R1Q13018 1463 aa10.07□□□□□ -0.8
PTCD2-201ENST00000308077 SIGLEC1Q9BZZ2 1709 aa10.07□□□□□ -0.8
PTCD2-201ENST00000308077 ARHGEF40Q8TER5 1519 aa10.06□□□□□ -0.8
PTCD2-201ENST00000308077 REREQ9P2R6 1566 aa10.06□□□□□ -0.8
PTCD2-201ENST00000308077 PPP1R15AO75807 674 aaPredicted RBP10.05□□□□□ -0.8
PTCD2-201ENST00000308077 ATP10AO60312 1499 aa10.05□□□□□ -0.8
PTCD2-201ENST00000308077 LMTK2Q8IWU2 1503 aa10.05□□□□□ -0.8
PTCD2-201ENST00000308077 KANK1Q14678 1352 aa10.05□□□□□ -0.8
PTCD2-201ENST00000308077 SCAF1Q9H7N4 1312 aaKnown RBP10.05□□□□□ -0.8
PTCD2-201ENST00000308077 EFCAB6Q5THR3 1501 aa10.04□□□□□ -0.8
PTCD2-201ENST00000308077 SPHKAPQ2M3C7 1700 aa10.04□□□□□ -0.8
PTCD2-201ENST00000308077 L3MBTL2Q969R5 705 aa10.03□□□□□ -0.8
PTCD2-201ENST00000308077 ABCC3O15438 1527 aa10.03□□□□□ -0.8
PTCD2-201ENST00000308077 PIP4K2BP78356 416 aa10.02□□□□□ -0.8
PTCD2-201ENST00000308077 GGT6Q6P531 493 aa10.02□□□□□ -0.81
PTCD2-201ENST00000308077 TRPM2O94759 1503 aa10.02□□□□□ -0.81
PTCD2-201ENST00000308077 AGLP35573 1532 aa10.02□□□□□ -0.81
PTCD2-201ENST00000308077 ZC3H13Q5T200 1668 aaKnown RBP10.01□□□□□ -0.81
PTCD2-201ENST00000308077 CAMSAP1Q5T5Y3 1602 aa10.01□□□□□ -0.81
PTCD2-201ENST00000308077 CCDC144AA2RUR9 1427 aa10.01□□□□□ -0.81
PTCD2-201ENST00000308077 CLTCL1P53675 1640 aa10□□□□□ -0.81
PTCD2-201ENST00000308077 CDK12Q9NYV4 1490 aaPredicted RBP10□□□□□ -0.81
PTCD2-201ENST00000308077 ZNF316A6NFI3 1004 aaPredicted RBP9.99□□□□□ -0.81
PTCD2-201ENST00000308077 C1QTNF8P60827 252 aa9.99□□□□□ -0.81
PTCD2-201ENST00000308077 NPATQ14207 1427 aa9.99□□□□□ -0.81
PTCD2-201ENST00000308077 SETD1BQ9UPS6 1966 aaKnown RBP9.98□□□□□ -0.81
PTCD2-201ENST00000308077 WASHC2CQ9Y4E1 1318 aa9.98□□□□□ -0.81
PTCD2-201ENST00000308077 CFAP65Q6ZU64 1925 aaKnown RBP9.98□□□□□ -0.81
PTCD2-201ENST00000308077 UHRF1BP1Q6BDS2 1440 aa9.98□□□□□ -0.81
PTCD2-201ENST00000308077 UGGT1Q9NYU2 1555 aa9.98□□□□□ -0.81
PTCD2-201ENST00000308077 NBPF8Q3BBV2 869 aa9.97□□□□□ -0.81
PTCD2-201ENST00000308077 SPATA31E1Q6ZUB1 1445 aa9.96□□□□□ -0.81
PTCD2-201ENST00000308077 PRELPP51888 382 aa9.96□□□□□ -0.82
PTCD2-201ENST00000308077 CLTCQ00610 1675 aaKnown RBP9.96□□□□□ -0.82
PTCD2-201ENST00000308077 ARHGAP31Q2M1Z3 1444 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms