RNA–Protein interactions for RNA: ENST00000299847.6

CHRFAM7A-201, Transcript of CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHRFAM7A, Length 6,220 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRFAM7A-201ENST00000299847 TMX4Q9H1E5 349 aaPredicted RBP16.93■□□□□ 0.3
CHRFAM7A-201ENST00000299847 TPM4P67936 248 aa16.93■□□□□ 0.3
CHRFAM7A-201ENST00000299847 SYAP1Q96A49 352 aaPredicted RBP16.93■□□□□ 0.3
CHRFAM7A-201ENST00000299847 A0A0U1RQG5 324 aaPredicted RBP16.93■□□□□ 0.3
CHRFAM7A-201ENST00000299847 NGEFQ8N5V2 710 aa16.93■□□□□ 0.3
CHRFAM7A-201ENST00000299847 L3MBTL2Q969R5 705 aa16.93■□□□□ 0.3
CHRFAM7A-201ENST00000299847 FRAT2O75474 233 aaPredicted RBP16.92■□□□□ 0.3
CHRFAM7A-201ENST00000299847 IPO9Q96P70 1041 aaKnown RBP16.92■□□□□ 0.3
CHRFAM7A-201ENST00000299847 HTATSF1O43719 755 aaKnown RBP16.91■□□□□ 0.3
CHRFAM7A-201ENST00000299847 PES1O00541 588 aaKnown RBP16.9■□□□□ 0.3
CHRFAM7A-201ENST00000299847 NECTIN2Q92692 538 aa16.9■□□□□ 0.3
CHRFAM7A-201ENST00000299847 VPS8Q8N3P4 1428 aa16.89■□□□□ 0.29
CHRFAM7A-201ENST00000299847 PTMSP20962 102 aa16.89■□□□□ 0.29
CHRFAM7A-201ENST00000299847 EIF3AQ14152 1382 aaKnown RBP16.89■□□□□ 0.29
CHRFAM7A-201ENST00000299847 TDRD9Q8NDG6 1382 aaKnown RBP16.89■□□□□ 0.29
CHRFAM7A-201ENST00000299847 WWC1Q8IX03 1113 aa16.89■□□□□ 0.29
CHRFAM7A-201ENST00000299847 HMMRO75330 724 aa16.88■□□□□ 0.29
CHRFAM7A-201ENST00000299847 TERF2IPQ9NYB0 399 aa16.88■□□□□ 0.29
CHRFAM7A-201ENST00000299847 ANKRD30AQ9BXX3 1397 aa16.87■□□□□ 0.29
CHRFAM7A-201ENST00000299847 ANKRD45Q5TZF3 282 aa16.87■□□□□ 0.29
CHRFAM7A-201ENST00000299847 TIMELESSQ9UNS1 1208 aa16.86■□□□□ 0.29
CHRFAM7A-201ENST00000299847 MARCH6O60337 910 aa16.86■□□□□ 0.29
CHRFAM7A-201ENST00000299847 GTF2E1P29083 439 aaPredicted RBP16.86■□□□□ 0.29
CHRFAM7A-201ENST00000299847 KIF16BQ96L93 1317 aa16.86■□□□□ 0.29
CHRFAM7A-201ENST00000299847 WASHC2CQ9Y4E1 1318 aa16.86■□□□□ 0.29
CHRFAM7A-201ENST00000299847 PANK3Q9H999 370 aa16.85■□□□□ 0.29
CHRFAM7A-201ENST00000299847 RAD21O60216 631 aa16.85■□□□□ 0.29
CHRFAM7A-201ENST00000299847 SF3A1Q15459 793 aaKnown RBP16.85■□□□□ 0.29
CHRFAM7A-201ENST00000299847 CCDC88BA6NC98 1476 aa16.85■□□□□ 0.29
CHRFAM7A-201ENST00000299847 BAZ1AQ9NRL2 1556 aaPredicted RBP16.84■□□□□ 0.29
CHRFAM7A-201ENST00000299847 NACADO15069 1562 aa16.83■□□□□ 0.29
CHRFAM7A-201ENST00000299847 H3BQV1 296 aa16.83■□□□□ 0.29
CHRFAM7A-201ENST00000299847 IFFO2Q5TF58 517 aa16.83■□□□□ 0.29
CHRFAM7A-201ENST00000299847 EFCAB2Q5VUJ9 269 aa16.83■□□□□ 0.29
CHRFAM7A-201ENST00000299847 EXOC6Q8TAG9 804 aa16.83■□□□□ 0.29
CHRFAM7A-201ENST00000299847 TNNT3P45378 269 aaPredicted RBP16.83■□□□□ 0.28
CHRFAM7A-201ENST00000299847 FHOD3Q2V2M9 1422 aa16.83■□□□□ 0.28
CHRFAM7A-201ENST00000299847 CRBNQ96SW2 442 aa16.83■□□□□ 0.28
CHRFAM7A-201ENST00000299847 CARMIL2Q6F5E8 1435 aa16.83■□□□□ 0.28
CHRFAM7A-201ENST00000299847 FBXO3Q9UK99 471 aa16.82■□□□□ 0.28
CHRFAM7A-201ENST00000299847 ST18O60284 1047 aa16.82■□□□□ 0.28
CHRFAM7A-201ENST00000299847 EIF2S2P20042 333 aaKnown RBP16.82■□□□□ 0.28
CHRFAM7A-201ENST00000299847 EID1Q9Y6B2 187 aa16.82■□□□□ 0.28
CHRFAM7A-201ENST00000299847 CCAR2Q8N163 923 aaKnown RBP16.81■□□□□ 0.28
CHRFAM7A-201ENST00000299847 ST20-MTHFSA0A0A6YYL1 179 aa16.8■□□□□ 0.28
CHRFAM7A-201ENST00000299847 GOLGA6L1Q8N7Z2 621 aa16.8■□□□□ 0.28
CHRFAM7A-201ENST00000299847 FOSBP53539 338 aa16.8■□□□□ 0.28
CHRFAM7A-201ENST00000299847 CSPP1Q1MSJ5 1256 aa16.8■□□□□ 0.28
CHRFAM7A-201ENST00000299847 MCTP1Q6DN14 999 aa16.8■□□□□ 0.28
CHRFAM7A-201ENST00000299847 MSH5O43196 834 aa16.8■□□□□ 0.28
CHRFAM7A-201ENST00000299847 TPD52L1Q16890 204 aaPredicted RBP16.8■□□□□ 0.28
CHRFAM7A-201ENST00000299847 FBXW7Q969H0 707 aa16.79■□□□□ 0.28
CHRFAM7A-201ENST00000299847 BCL11BQ9C0K0 894 aaPredicted RBP16.79■□□□□ 0.28
CHRFAM7A-201ENST00000299847 COG6Q9Y2V7 657 aa16.79■□□□□ 0.28
CHRFAM7A-201ENST00000299847 NLRP13Q86W25 1043 aa16.79■□□□□ 0.28
CHRFAM7A-201ENST00000299847 FMN1Q68DA7 1419 aa16.78■□□□□ 0.28
CHRFAM7A-201ENST00000299847 FAM184AQ8NB25 1140 aa16.77■□□□□ 0.28
CHRFAM7A-201ENST00000299847 MINK1Q8N4C8 1332 aaPredicted RBP16.76■□□□□ 0.27
CHRFAM7A-201ENST00000299847 ZNF592Q92610 1267 aa16.76■□□□□ 0.27
CHRFAM7A-201ENST00000299847 TPM3P06753 285 aa16.76■□□□□ 0.27
CHRFAM7A-201ENST00000299847 LMOD3Q0VAK6 560 aa16.76■□□□□ 0.27
CHRFAM7A-201ENST00000299847 DDX49Q9Y6V7 483 aaKnown RBP16.75■□□□□ 0.27
CHRFAM7A-201ENST00000299847 KIF15Q9NS87 1388 aa16.75■□□□□ 0.27
CHRFAM7A-201ENST00000299847 MYBBP1AQ9BQG0 1328 aaKnown RBP16.75■□□□□ 0.27
CHRFAM7A-201ENST00000299847 PDE4AP27815 886 aa16.75■□□□□ 0.27
CHRFAM7A-201ENST00000299847 C1orf141Q5JVX7 400 aa16.75■□□□□ 0.27
CHRFAM7A-201ENST00000299847 PATL2C9JE40 543 aaKnown RBP16.74■□□□□ 0.27
CHRFAM7A-201ENST00000299847 EVA1CP58658 441 aa16.74■□□□□ 0.27
CHRFAM7A-201ENST00000299847 CCDC34Q96HJ3 373 aa16.74■□□□□ 0.27
CHRFAM7A-201ENST00000299847 PHF14O94880 888 aa16.73■□□□□ 0.27
CHRFAM7A-201ENST00000299847 CEP89Q96ST8 783 aa16.73■□□□□ 0.27
CHRFAM7A-201ENST00000299847 SYTL4Q96C24 671 aaPredicted RBP16.73■□□□□ 0.27
CHRFAM7A-201ENST00000299847 KDM4AO75164 1064 aa16.72■□□□□ 0.27
CHRFAM7A-201ENST00000299847 ANO2Q9NQ90 1003 aa16.72■□□□□ 0.27
CHRFAM7A-201ENST00000299847 COG3Q96JB2 828 aa16.72■□□□□ 0.27
CHRFAM7A-201ENST00000299847 RRP1P56182 461 aaKnown RBP16.71■□□□□ 0.27
CHRFAM7A-201ENST00000299847 FAM161AQ3B820 660 aa16.71■□□□□ 0.27
CHRFAM7A-201ENST00000299847 DDX11L8A8MPP1 907 aa16.71■□□□□ 0.26
CHRFAM7A-201ENST00000299847 MROH2BQ7Z745 1585 aa16.7■□□□□ 0.26
CHRFAM7A-201ENST00000299847 APAF1O14727 1248 aa16.7■□□□□ 0.26
CHRFAM7A-201ENST00000299847 GOLGA6L19H0YKK7 550 aa16.7■□□□□ 0.26
CHRFAM7A-201ENST00000299847 AKAP17AQ02040 695 aaKnown RBP16.7■□□□□ 0.26
CHRFAM7A-201ENST00000299847 SAMD1Q6SPF0 538 aaPredicted RBP16.7■□□□□ 0.26
CHRFAM7A-201ENST00000299847 CENPQQ7L2Z9 268 aaPredicted RBP16.7■□□□□ 0.26
CHRFAM7A-201ENST00000299847 APPP05067 770 aa16.69■□□□□ 0.26
CHRFAM7A-201ENST00000299847 DIAPH3Q9NSV4 1193 aa16.69■□□□□ 0.26
CHRFAM7A-201ENST00000299847 ZKSCAN2Q63HK3 967 aa16.69■□□□□ 0.26
CHRFAM7A-201ENST00000299847 PCMTD1Q96MG8 357 aaPredicted RBP16.69■□□□□ 0.26
CHRFAM7A-201ENST00000299847 HDAC5Q9UQL6 1122 aa16.68■□□□□ 0.26
CHRFAM7A-201ENST00000299847 BECN2A8MW95 431 aa16.68■□□□□ 0.26
CHRFAM7A-201ENST00000299847 C9orf78Q9NZ63 289 aaPredicted RBP16.68■□□□□ 0.26
CHRFAM7A-201ENST00000299847 PDE3BQ13370 1112 aa16.67■□□□□ 0.26
CHRFAM7A-201ENST00000299847 CCDC144AA2RUR9 1427 aa16.66■□□□□ 0.26
CHRFAM7A-201ENST00000299847 TEFQ10587 303 aa16.66■□□□□ 0.26
CHRFAM7A-201ENST00000299847 TTC5Q8N0Z6 440 aa16.65■□□□□ 0.26
CHRFAM7A-201ENST00000299847 CHMP4AQ9BY43 222 aa16.65■□□□□ 0.26
CHRFAM7A-201ENST00000299847 DHX16O60231 1041 aaKnown RBP16.65■□□□□ 0.26
CHRFAM7A-201ENST00000299847 HSP90AA2PQ14568 343 aaPredicted RBP16.64■□□□□ 0.25
CHRFAM7A-201ENST00000299847 NUTM2GQ5VZR2 741 aa16.64■□□□□ 0.25
CHRFAM7A-201ENST00000299847 CGNL1Q0VF96 1302 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms