RNA–Protein interactions for RNA: ENST00000293748.9

SYNGAP1-201, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 4,556 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-201ENST00000293748 SLC4A1APQ9BWU0 796 aaKnown RBP16.22■□□□□ 0.19
SYNGAP1-201ENST00000293748 MBD5Q9P267 1494 aa16.22■□□□□ 0.19
SYNGAP1-201ENST00000293748 RRBP1Q9P2E9 1410 aaKnown RBP16.22■□□□□ 0.19
SYNGAP1-201ENST00000293748 ANKRD50Q9ULJ7 1429 aa16.21■□□□□ 0.18
SYNGAP1-201ENST00000293748 ARHGEF12Q9NZN5 1544 aa16.21■□□□□ 0.18
SYNGAP1-201ENST00000293748 ROCK1Q13464 1354 aa16.2■□□□□ 0.18
SYNGAP1-201ENST00000293748 DUOX2Q9NRD8 1548 aa16.19■□□□□ 0.18
SYNGAP1-201ENST00000293748 KDM5CP41229 1560 aa16.19■□□□□ 0.18
SYNGAP1-201ENST00000293748 ERBINQ96RT1 1412 aa16.17■□□□□ 0.18
SYNGAP1-201ENST00000293748 NUP155O75694 1391 aa16.16■□□□□ 0.18
SYNGAP1-201ENST00000293748 CHGAP10645 457 aaKnown RBP16.16■□□□□ 0.18
SYNGAP1-201ENST00000293748 DNMT1P26358 1616 aaKnown RBP16.15■□□□□ 0.18
SYNGAP1-201ENST00000293748 RICTORQ6R327 1708 aa16.15■□□□□ 0.18
SYNGAP1-201ENST00000293748 HDGFP51858 240 aaKnown RBP16.14■□□□□ 0.18
SYNGAP1-201ENST00000293748 NCOA1Q15788 1441 aa16.14■□□□□ 0.17
SYNGAP1-201ENST00000293748 ZBTB47Q9UFB7 747 aaPredicted RBP16.12■□□□□ 0.17
SYNGAP1-201ENST00000293748 AGLP35573 1532 aa16.12■□□□□ 0.17
SYNGAP1-201ENST00000293748 DIP2CQ9Y2E4 1556 aa16.12■□□□□ 0.17
SYNGAP1-201ENST00000293748 MAST1Q9Y2H9 1570 aa16.11■□□□□ 0.17
SYNGAP1-201ENST00000293748 FRMPD1Q5SYB0 1578 aa16.1■□□□□ 0.17
SYNGAP1-201ENST00000293748 ADGBQ8N7X0 1667 aa16.1■□□□□ 0.17
SYNGAP1-201ENST00000293748 PPP1R15AO75807 674 aaPredicted RBP16.09■□□□□ 0.17
SYNGAP1-201ENST00000293748 SETD5Q9C0A6 1442 aa16.09■□□□□ 0.17
SYNGAP1-201ENST00000293748 ADGRL2O95490 1459 aa16.09■□□□□ 0.17
SYNGAP1-201ENST00000293748 INO80Q9ULG1 1556 aaPredicted RBP16.08■□□□□ 0.17
SYNGAP1-201ENST00000293748 FKBP8Q14318 412 aa16.08■□□□□ 0.16
SYNGAP1-201ENST00000293748 CEBPAP49715 358 aaPredicted RBP16.07■□□□□ 0.16
SYNGAP1-201ENST00000293748 ZMYM3Q14202 1370 aa16.07■□□□□ 0.16
SYNGAP1-201ENST00000293748 REREQ9P2R6 1566 aa16.06■□□□□ 0.16
SYNGAP1-201ENST00000293748 EID1Q9Y6B2 187 aa16.06■□□□□ 0.16
SYNGAP1-201ENST00000293748 ABCA6Q8N139 1617 aa16.06■□□□□ 0.16
SYNGAP1-201ENST00000293748 PLXNC1O60486 1568 aa16.05■□□□□ 0.16
SYNGAP1-201ENST00000293748 KDM4FA0A1W2PPD8 638 aa16.05■□□□□ 0.16
SYNGAP1-201ENST00000293748 EIF5BO60841 1220 aaKnown RBP16.05■□□□□ 0.16
SYNGAP1-201ENST00000293748 THEMISQ8N1K5 641 aaPredicted RBP16.05■□□□□ 0.16
SYNGAP1-201ENST00000293748 UHRF1BP1Q6BDS2 1440 aa16.05■□□□□ 0.16
SYNGAP1-201ENST00000293748 ZNF326Q5BKZ1 582 aaKnown RBP16.04■□□□□ 0.16
SYNGAP1-201ENST00000293748 KIDINS220Q9ULH0 1771 aa16.04■□□□□ 0.16
SYNGAP1-201ENST00000293748 DMRT2Q9Y5R5 561 aa16.04■□□□□ 0.16
SYNGAP1-201ENST00000293748 TNRQ92752 1358 aa16.03■□□□□ 0.16
SYNGAP1-201ENST00000293748 CANXP27824 592 aaKnown RBP16.03■□□□□ 0.16
SYNGAP1-201ENST00000293748 HFM1A2PYH4 1435 aa16.03■□□□□ 0.16
SYNGAP1-201ENST00000293748 FAM135AQ9P2D6 1515 aa16.02■□□□□ 0.16
SYNGAP1-201ENST00000293748 PKD2Q13563 968 aa16.01■□□□□ 0.15
SYNGAP1-201ENST00000293748 SLC52A1Q9NWF4 448 aa16.01■□□□□ 0.15
SYNGAP1-201ENST00000293748 PTPRMP28827 1452 aa16.01■□□□□ 0.15
SYNGAP1-201ENST00000293748 GLIPR1L2Q4G1C9 344 aa16.01■□□□□ 0.15
SYNGAP1-201ENST00000293748 KDM5DQ9BY66 1539 aa16■□□□□ 0.15
SYNGAP1-201ENST00000293748 NPM2Q86SE8 214 aaKnown RBP15.99■□□□□ 0.15
SYNGAP1-201ENST00000293748 SCAF1Q9H7N4 1312 aaKnown RBP15.99■□□□□ 0.15
SYNGAP1-201ENST00000293748 EIF2AK4Q9P2K8 1649 aaKnown RBP15.97■□□□□ 0.15
SYNGAP1-201ENST00000293748 NAIPQ13075 1403 aa15.97■□□□□ 0.15
SYNGAP1-201ENST00000293748 BCORL1Q5H9F3 1711 aa15.96■□□□□ 0.15
SYNGAP1-201ENST00000293748 PTPRKQ15262 1439 aa15.96■□□□□ 0.15
SYNGAP1-201ENST00000293748 ANKLE2Q86XL3 938 aa15.96■□□□□ 0.15
SYNGAP1-201ENST00000293748 ANP32BQ92688 251 aaKnown RBP15.96■□□□□ 0.15
SYNGAP1-201ENST00000293748 CROCC2H7BZ55 1655 aa15.96■□□□□ 0.14
SYNGAP1-201ENST00000293748 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.95■□□□□ 0.14
SYNGAP1-201ENST00000293748 MPHOSPH9Q99550 1183 aa15.95■□□□□ 0.14
SYNGAP1-201ENST00000293748 RAB3GAP2Q9H2M9 1393 aa15.95■□□□□ 0.14
SYNGAP1-201ENST00000293748 NPATQ14207 1427 aa15.95■□□□□ 0.14
SYNGAP1-201ENST00000293748 RIMS1Q86UR5 1692 aaKnown RBP15.95■□□□□ 0.14
SYNGAP1-201ENST00000293748 FBXO31Q5XUX0 539 aaPredicted RBP15.95■□□□□ 0.14
SYNGAP1-201ENST00000293748 MADDQ8WXG6 1647 aa15.94■□□□□ 0.14
SYNGAP1-201ENST00000293748 HNRNPUQ00839 825 aaKnown RBP eCLIP15.92■□□□□ 0.14
SYNGAP1-201ENST00000293748 FER1L4A9Z1Z3 1794 aa15.92■□□□□ 0.14
SYNGAP1-201ENST00000293748 PZPP20742 1482 aa15.9■□□□□ 0.14
SYNGAP1-201ENST00000293748 CCDC144AA2RUR9 1427 aa15.88■□□□□ 0.13
SYNGAP1-201ENST00000293748 ABCC3O15438 1527 aa15.88■□□□□ 0.13
SYNGAP1-201ENST00000293748 HSPA2P54652 639 aa15.88■□□□□ 0.13
SYNGAP1-201ENST00000293748 NEFMP07197 916 aa15.88■□□□□ 0.13
SYNGAP1-201ENST00000293748 TXNDC2Q86VQ3 553 aa15.88■□□□□ 0.13
SYNGAP1-201ENST00000293748 NLRP1Q9C000 1473 aa15.88■□□□□ 0.13
SYNGAP1-201ENST00000293748 RPRD2Q5VT52 1461 aaKnown RBP15.87■□□□□ 0.13
SYNGAP1-201ENST00000293748 ARHGAP31Q2M1Z3 1444 aa15.87■□□□□ 0.13
SYNGAP1-201ENST00000293748 UPF2Q9HAU5 1272 aaKnown RBP15.87■□□□□ 0.13
SYNGAP1-201ENST00000293748 TONSLQ96HA7 1378 aa15.86■□□□□ 0.13
SYNGAP1-201ENST00000293748 ADAMTSL3P82987 1691 aa15.86■□□□□ 0.13
SYNGAP1-201ENST00000293748 ZC3H13Q5T200 1668 aaKnown RBP15.86■□□□□ 0.13
SYNGAP1-201ENST00000293748 CLTCQ00610 1675 aaKnown RBP15.85■□□□□ 0.13
SYNGAP1-201ENST00000293748 PRDM15P57071 1507 aaPredicted RBP15.85■□□□□ 0.13
SYNGAP1-201ENST00000293748 DDX10Q13206 875 aaKnown RBP15.85■□□□□ 0.13
SYNGAP1-201ENST00000293748 RGL3Q3MIN7 710 aa15.85■□□□□ 0.13
SYNGAP1-201ENST00000293748 RNF17Q9BXT8 1623 aaKnown RBP15.84■□□□□ 0.13
SYNGAP1-201ENST00000293748 VGFO15240 615 aaPredicted RBP15.84■□□□□ 0.13
SYNGAP1-201ENST00000293748 IDI1Q13907 227 aa15.83■□□□□ 0.13
SYNGAP1-201ENST00000293748 CCDC136Q96JN2 1154 aa15.83■□□□□ 0.12
SYNGAP1-201ENST00000293748 ERVK-7P63135 1459 aa15.82■□□□□ 0.12
SYNGAP1-201ENST00000293748 C14orf37Q86TY3 774 aa15.81■□□□□ 0.12
SYNGAP1-201ENST00000293748 A2ML1A8K2U0 1454 aa15.81■□□□□ 0.12
SYNGAP1-201ENST00000293748 LMTK2Q8IWU2 1503 aa15.81■□□□□ 0.12
SYNGAP1-201ENST00000293748 GCC2Q8IWJ2 1684 aa15.8■□□□□ 0.12
SYNGAP1-201ENST00000293748 HSP90AA1P07900 732 aaKnown RBP15.8■□□□□ 0.12
SYNGAP1-201ENST00000293748 FOXD1Q16676 465 aa15.8■□□□□ 0.12
SYNGAP1-201ENST00000293748 NBR1Q14596 966 aa15.8■□□□□ 0.12
SYNGAP1-201ENST00000293748 SETD1BQ9UPS6 1966 aaKnown RBP15.79■□□□□ 0.12
SYNGAP1-201ENST00000293748 RPGRIP1LQ68CZ1 1315 aa15.79■□□□□ 0.12
SYNGAP1-201ENST00000293748 MROH2AA6NES4 1674 aa15.79■□□□□ 0.12
SYNGAP1-201ENST00000293748 FAM9BQ8IZU0 186 aa15.77■□□□□ 0.12
SYNGAP1-201ENST00000293748 STAC3Q96MF2 364 aa15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms