RNA–Protein interactions for RNA: ENST00000284637.13

SH3RF1-201, Transcript of SH3 domain containing ring finger 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SH3RF1, Length 5,272 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-201ENST00000284637 SLC4A10Q6U841 1118 aa20.5■□□□□ 0.87
SH3RF1-201ENST00000284637 RAPGEF2Q9Y4G8 1499 aa20.5■□□□□ 0.87
SH3RF1-201ENST00000284637 HNRNPMP52272 730 aaKnown RBP eCLIP20.5■□□□□ 0.87
SH3RF1-201ENST00000284637 BRPF3Q9ULD4 1205 aa20.5■□□□□ 0.87
SH3RF1-201ENST00000284637 NFKBIBQ15653 356 aa20.49■□□□□ 0.87
SH3RF1-201ENST00000284637 STK31Q9BXU1 1019 aa20.49■□□□□ 0.87
SH3RF1-201ENST00000284637 PHLDB1Q86UU1 1377 aa20.48■□□□□ 0.87
SH3RF1-201ENST00000284637 ERCC6Q03468 1493 aa20.48■□□□□ 0.87
SH3RF1-201ENST00000284637 HMMRO75330 724 aa20.47■□□□□ 0.87
SH3RF1-201ENST00000284637 FAM43AQ8N2R8 423 aa20.47■□□□□ 0.87
SH3RF1-201ENST00000284637 HDGFP51858 240 aaKnown RBP20.47■□□□□ 0.87
SH3RF1-201ENST00000284637 EIF3AQ14152 1382 aaKnown RBP20.47■□□□□ 0.87
SH3RF1-201ENST00000284637 HTATSF1O43719 755 aaKnown RBP20.46■□□□□ 0.87
SH3RF1-201ENST00000284637 COG6Q9Y2V7 657 aa20.46■□□□□ 0.87
SH3RF1-201ENST00000284637 DDX49Q9Y6V7 483 aaKnown RBP20.45■□□□□ 0.86
SH3RF1-201ENST00000284637 ST18O60284 1047 aa20.45■□□□□ 0.86
SH3RF1-201ENST00000284637 A0A0U1RQG5 324 aaPredicted RBP20.44■□□□□ 0.86
SH3RF1-201ENST00000284637 NUTM2DQ5VT03 806 aaPredicted RBP20.44■□□□□ 0.86
SH3RF1-201ENST00000284637 FAM13BQ9NYF5 915 aa20.44■□□□□ 0.86
SH3RF1-201ENST00000284637 PAK3O75914 559 aaPredicted RBP20.44■□□□□ 0.86
SH3RF1-201ENST00000284637 KIF3BO15066 747 aa20.43■□□□□ 0.86
SH3RF1-201ENST00000284637 ELL2O00472 640 aaPredicted RBP20.43■□□□□ 0.86
SH3RF1-201ENST00000284637 MAP7D2Q96T17 732 aa20.43■□□□□ 0.86
SH3RF1-201ENST00000284637 EFCAB2Q5VUJ9 269 aa20.42■□□□□ 0.86
SH3RF1-201ENST00000284637 SKOR2Q2VWA4 1001 aaPredicted RBP20.42■□□□□ 0.86
SH3RF1-201ENST00000284637 TERF2IPQ9NYB0 399 aa20.42■□□□□ 0.86
SH3RF1-201ENST00000284637 ANKRD45Q5TZF3 282 aa20.41■□□□□ 0.86
SH3RF1-201ENST00000284637 SPAG9O60271 1321 aaKnown RBP20.41■□□□□ 0.86
SH3RF1-201ENST00000284637 RUSC2Q8N2Y8 1516 aa20.41■□□□□ 0.86
SH3RF1-201ENST00000284637 HSP90B1P14625 803 aaKnown RBP20.4■□□□□ 0.86
SH3RF1-201ENST00000284637 FOXD4L6Q3SYB3 417 aaPredicted RBP20.4■□□□□ 0.86
SH3RF1-201ENST00000284637 FOXD4L3Q6VB84 417 aaPredicted RBP20.4■□□□□ 0.86
SH3RF1-201ENST00000284637 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.4■□□□□ 0.86
SH3RF1-201ENST00000284637 ZNF330Q9Y3S2 320 aaPredicted RBP20.4■□□□□ 0.86
SH3RF1-201ENST00000284637 UBE2Q2Q8WVN8 375 aa20.4■□□□□ 0.86
SH3RF1-201ENST00000284637 TRAK1Q9UPV9 953 aa20.39■□□□□ 0.86
SH3RF1-201ENST00000284637 CARMIL2Q6F5E8 1435 aa20.39■□□□□ 0.85
SH3RF1-201ENST00000284637 APAF1O14727 1248 aa20.39■□□□□ 0.85
SH3RF1-201ENST00000284637 E9PSI1 815 aa20.38■□□□□ 0.85
SH3RF1-201ENST00000284637 ISY1Q9ULR0 285 aaKnown RBP20.38■□□□□ 0.85
SH3RF1-201ENST00000284637 USP47Q96K76 1375 aa20.38■□□□□ 0.85
SH3RF1-201ENST00000284637 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.37■□□□□ 0.855e-6■■■■□ 20.3
SH3RF1-201ENST00000284637 CGNL1Q0VF96 1302 aa20.37■□□□□ 0.85
SH3RF1-201ENST00000284637 CSPP1Q1MSJ5 1256 aa20.37■□□□□ 0.85
SH3RF1-201ENST00000284637 ZKSCAN2Q63HK3 967 aa20.37■□□□□ 0.85
SH3RF1-201ENST00000284637 MTERF4Q7Z6M4 381 aaKnown RBP20.37■□□□□ 0.85
SH3RF1-201ENST00000284637 PHF14O94880 888 aa20.36■□□□□ 0.85
SH3RF1-201ENST00000284637 TPM4P67936 248 aa20.36■□□□□ 0.85
SH3RF1-201ENST00000284637 GPATCH3Q96I76 525 aa20.35■□□□□ 0.85
SH3RF1-201ENST00000284637 CHMP3Q9Y3E7 222 aa20.35■□□□□ 0.85
SH3RF1-201ENST00000284637 TPM2P07951 284 aa20.35■□□□□ 0.85
SH3RF1-201ENST00000284637 WIZO95785 1651 aa20.34■□□□□ 0.85
SH3RF1-201ENST00000284637 MSH5O43196 834 aa20.34■□□□□ 0.85
SH3RF1-201ENST00000284637 GORABQ5T7V8 394 aa20.33■□□□□ 0.85
SH3RF1-201ENST00000284637 KIF16BQ96L93 1317 aa20.33■□□□□ 0.85
SH3RF1-201ENST00000284637 RRP9O43818 475 aaKnown RBP20.33■□□□□ 0.85
SH3RF1-201ENST00000284637 ZNF771Q7L3S4 317 aaPredicted RBP20.33■□□□□ 0.84
SH3RF1-201ENST00000284637 RILPL2Q969X0 211 aa20.33■□□□□ 0.84
SH3RF1-201ENST00000284637 CLSTN1O94985 981 aa20.32■□□□□ 0.84
SH3RF1-201ENST00000284637 LMOD3Q0VAK6 560 aa20.32■□□□□ 0.84
SH3RF1-201ENST00000284637 MRE11P49959 708 aa20.31■□□□□ 0.84
SH3RF1-201ENST00000284637 CCDC18Q5T9S5 1454 aa20.3■□□□□ 0.84
SH3RF1-201ENST00000284637 CCDC144AA2RUR9 1427 aa20.3■□□□□ 0.84
SH3RF1-201ENST00000284637 CSB-PGBD3P0DP91 1061 aa20.29■□□□□ 0.84
SH3RF1-201ENST00000284637 CHMP4AQ9BY43 222 aa20.28■□□□□ 0.84
SH3RF1-201ENST00000284637 NUTM2FA1L443 756 aa20.28■□□□□ 0.84
SH3RF1-201ENST00000284637 CHMP5Q9NZZ3 219 aa20.28■□□□□ 0.84
SH3RF1-201ENST00000284637 CREBRFQ8IUR6 639 aa20.27■□□□□ 0.84
SH3RF1-201ENST00000284637 LTV1Q96GA3 475 aaPredicted RBP20.27■□□□□ 0.83
SH3RF1-201ENST00000284637 HDAC5Q9UQL6 1122 aa20.26■□□□□ 0.83
SH3RF1-201ENST00000284637 TOP2AP11388 1531 aaKnown RBP20.26■□□□□ 0.83
SH3RF1-201ENST00000284637 SF3A1Q15459 793 aaKnown RBP20.26■□□□□ 0.83
SH3RF1-201ENST00000284637 RSPH4AQ5TD94 716 aa20.25■□□□□ 0.83
SH3RF1-201ENST00000284637 KIF7Q2M1P5 1343 aa20.25■□□□□ 0.83
SH3RF1-201ENST00000284637 NOC3LQ8WTT2 800 aaKnown RBP20.25■□□□□ 0.83
SH3RF1-201ENST00000284637 AMPHP49418 695 aa20.24■□□□□ 0.83
SH3RF1-201ENST00000284637 CCDC34Q96HJ3 373 aa20.23■□□□□ 0.83
SH3RF1-201ENST00000284637 TAF7LQ5H9L4 462 aa20.23■□□□□ 0.83
SH3RF1-201ENST00000284637 WASHC2CQ9Y4E1 1318 aa20.23■□□□□ 0.83
SH3RF1-201ENST00000284637 CCDC7Q96M83 1385 aa20.23■□□□□ 0.83
SH3RF1-201ENST00000284637 DZIP1LQ8IYY4 767 aaKnown RBP20.22■□□□□ 0.83
SH3RF1-201ENST00000284637 GOLGA6L1Q8N7Z2 621 aa20.22■□□□□ 0.83
SH3RF1-201ENST00000284637 DDX19BQ9UMR2 479 aa20.22■□□□□ 0.83
SH3RF1-201ENST00000284637 NGDNQ8NEJ9 315 aaKnown RBP20.21■□□□□ 0.83
SH3RF1-201ENST00000284637 SMARCA2P51531 1590 aa20.2■□□□□ 0.82
SH3RF1-201ENST00000284637 H3BQV1 296 aa20.2■□□□□ 0.82
SH3RF1-201ENST00000284637 IFFO2Q5TF58 517 aa20.2■□□□□ 0.82
SH3RF1-201ENST00000284637 ATP6V1DQ9Y5K8 247 aa20.2■□□□□ 0.82
SH3RF1-201ENST00000284637 FRAT2O75474 233 aaPredicted RBP20.2■□□□□ 0.82
SH3RF1-201ENST00000284637 RASSF8Q8NHQ8 419 aa20.2■□□□□ 0.82
SH3RF1-201ENST00000284637 CCDC9Q9Y3X0 531 aaKnown RBP20.2■□□□□ 0.82
SH3RF1-201ENST00000284637 GOLGA6L19H0YKK7 550 aa20.19■□□□□ 0.82
SH3RF1-201ENST00000284637 KIF3AQ9Y496 699 aa20.19■□□□□ 0.82
SH3RF1-201ENST00000284637 BECN2A8MW95 431 aa20.19■□□□□ 0.82
SH3RF1-201ENST00000284637 TOMM22Q9NS69 142 aa20.19■□□□□ 0.82
SH3RF1-201ENST00000284637 R3HCC1Q9Y3T6 440 aaKnown RBP20.18■□□□□ 0.82
SH3RF1-201ENST00000284637 REC8O95072 547 aa20.17■□□□□ 0.82
SH3RF1-201ENST00000284637 FAM184AQ8NB25 1140 aa20.17■□□□□ 0.82
SH3RF1-201ENST00000284637 PANK1Q8TE04 598 aa20.17■□□□□ 0.82
SH3RF1-201ENST00000284637 ZNF592Q92610 1267 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms