RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 NCOA1Q15788 1441 aa22.57■■□□□ 1.2
HMGN3-201ENST00000275036 FGD6Q6ZV73 1430 aa22.57■■□□□ 1.2
HMGN3-201ENST00000275036 TCOF1Q13428 1488 aaKnown RBP22.57■■□□□ 1.2
HMGN3-201ENST00000275036 CAMSAP1Q5T5Y3 1602 aa22.57■■□□□ 1.2
HMGN3-201ENST00000275036 FAM135AQ9P2D6 1515 aa22.57■■□□□ 1.2
HMGN3-201ENST00000275036 CEP170BQ9Y4F5 1589 aaPredicted RBP22.56■■□□□ 1.2
HMGN3-201ENST00000275036 MROH1Q8NDA8 1641 aa22.56■■□□□ 1.2
HMGN3-201ENST00000275036 EIF2AK4Q9P2K8 1649 aaKnown RBP22.55■■□□□ 1.2
HMGN3-201ENST00000275036 SHANK2Q9UPX8 1470 aa22.54■■□□□ 1.2
HMGN3-201ENST00000275036 DNMT1P26358 1616 aaKnown RBP22.54■■□□□ 1.2
HMGN3-201ENST00000275036 FBXO41Q8TF61 875 aa22.53■■□□□ 1.2
HMGN3-201ENST00000275036 PZPP20742 1482 aa22.53■■□□□ 1.2
HMGN3-201ENST00000275036 DAPK1P53355 1430 aa22.52■■□□□ 1.2
HMGN3-201ENST00000275036 FBXO31Q5XUX0 539 aaPredicted RBP22.52■■□□□ 1.2
HMGN3-201ENST00000275036 PTPRTO14522 1441 aa22.51■■□□□ 1.19
HMGN3-201ENST00000275036 ABCC3O15438 1527 aa22.51■■□□□ 1.19
HMGN3-201ENST00000275036 DUOX2Q9NRD8 1548 aa22.51■■□□□ 1.19
HMGN3-201ENST00000275036 WASHC2CQ9Y4E1 1318 aa22.5■■□□□ 1.19
HMGN3-201ENST00000275036 ZC3H13Q5T200 1668 aaKnown RBP22.48■■□□□ 1.19
HMGN3-201ENST00000275036 A2ML1A8K2U0 1454 aa22.47■■□□□ 1.19
HMGN3-201ENST00000275036 CERKQ8TCT0 537 aa22.47■■□□□ 1.19
HMGN3-201ENST00000275036 DMRT2Q9Y5R5 561 aa22.47■■□□□ 1.19
HMGN3-201ENST00000275036 KIF15Q9NS87 1388 aa22.47■■□□□ 1.19
HMGN3-201ENST00000275036 CEP152O94986 1710 aa22.46■■□□□ 1.19
HMGN3-201ENST00000275036 TNRQ92752 1358 aa22.46■■□□□ 1.19
HMGN3-201ENST00000275036 PLA2R1Q13018 1463 aa22.46■■□□□ 1.19
HMGN3-201ENST00000275036 NCKAP5LQ9HCH0 1330 aa22.45■■□□□ 1.18
HMGN3-201ENST00000275036 PRDM15P57071 1507 aaPredicted RBP22.44■■□□□ 1.18
HMGN3-201ENST00000275036 LTBP4Q8N2S1 1624 aa22.43■■□□□ 1.18
HMGN3-201ENST00000275036 ERBINQ96RT1 1412 aa22.43■■□□□ 1.18
HMGN3-201ENST00000275036 RRP7BPQ9NSQ0 103 aa22.43■■□□□ 1.18
HMGN3-201ENST00000275036 DEPDC5O75140 1603 aa22.41■■□□□ 1.18
HMGN3-201ENST00000275036 SPATA31D1Q6ZQQ2 1576 aa22.41■■□□□ 1.18
HMGN3-201ENST00000275036 CHIC2Q9UKJ5 165 aa22.39■■□□□ 1.17
HMGN3-201ENST00000275036 ERVK-7P63135 1459 aa22.37■■□□□ 1.17
HMGN3-201ENST00000275036 NEURL4Q96JN8 1562 aa22.37■■□□□ 1.17
HMGN3-201ENST00000275036 ADGRL2O95490 1459 aa22.36■■□□□ 1.17
HMGN3-201ENST00000275036 NLRP1Q9C000 1473 aa22.36■■□□□ 1.17
HMGN3-201ENST00000275036 POLR1AO95602 1720 aaPredicted RBP22.35■■□□□ 1.17
HMGN3-201ENST00000275036 FAM50AQ14320 339 aaKnown RBP22.35■■□□□ 1.17
HMGN3-201ENST00000275036 PPARGC1BQ86YN6 1023 aaKnown RBP22.35■■□□□ 1.17
HMGN3-201ENST00000275036 ANKRD30AQ9BXX3 1397 aa22.35■■□□□ 1.17
HMGN3-201ENST00000275036 PKD2Q13563 968 aa22.34■■□□□ 1.17
HMGN3-201ENST00000275036 UGGT1Q9NYU2 1555 aa22.33■■□□□ 1.17
HMGN3-201ENST00000275036 CFAP65Q6ZU64 1925 aaKnown RBP22.33■■□□□ 1.17
HMGN3-201ENST00000275036 VWDEQ8N2E2 1590 aa22.33■■□□□ 1.16
HMGN3-201ENST00000275036 ZNF335Q9H4Z2 1342 aaPredicted RBP22.31■■□□□ 1.16
HMGN3-201ENST00000275036 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.31■■□□□ 1.16
HMGN3-201ENST00000275036 ARHGAP31Q2M1Z3 1444 aa22.31■■□□□ 1.16
HMGN3-201ENST00000275036 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.29■■□□□ 1.163e-7■□□□□ 8.9
HMGN3-201ENST00000275036 LMTK2Q8IWU2 1503 aa22.28■■□□□ 1.16
HMGN3-201ENST00000275036 UBR1Q8IWV7 1749 aa22.27■■□□□ 1.16
HMGN3-201ENST00000275036 IQSEC2Q5JU85 1478 aa22.23■■□□□ 1.15
HMGN3-201ENST00000275036 THEMISQ8N1K5 641 aaPredicted RBP22.23■■□□□ 1.15
HMGN3-201ENST00000275036 ANKRD50Q9ULJ7 1429 aa22.23■■□□□ 1.15
HMGN3-201ENST00000275036 MED14O60244 1454 aa22.22■■□□□ 1.15
HMGN3-201ENST00000275036 EFCAB6Q5THR3 1501 aa22.22■■□□□ 1.15
HMGN3-201ENST00000275036 KANK1Q14678 1352 aa22.21■■□□□ 1.15
HMGN3-201ENST00000275036 SYNMO15061 1565 aa22.21■■□□□ 1.15
HMGN3-201ENST00000275036 PIK3C2BO00750 1634 aa22.2■■□□□ 1.15
HMGN3-201ENST00000275036 ANKLE2Q86XL3 938 aa22.2■■□□□ 1.14
HMGN3-201ENST00000275036 NPHP4O75161 1426 aaPredicted RBP22.19■■□□□ 1.14
HMGN3-201ENST00000275036 IQGAP1P46940 1657 aa22.19■■□□□ 1.14
HMGN3-201ENST00000275036 UNC13BO14795 1591 aa22.17■■□□□ 1.14
HMGN3-201ENST00000275036 ARHGAP23Q9P227 1491 aa22.16■■□□□ 1.14
HMGN3-201ENST00000275036 NOS1P29475 1434 aa22.15■■□□□ 1.14
HMGN3-201ENST00000275036 ROCK1Q13464 1354 aa22.15■■□□□ 1.14
HMGN3-201ENST00000275036 SLIT1O75093 1534 aa22.15■■□□□ 1.14
HMGN3-201ENST00000275036 TET3O43151 1660 aa22.13■■□□□ 1.13
HMGN3-201ENST00000275036 STRCP1A6NGW2 1772 aa22.12■■□□□ 1.13
HMGN3-201ENST00000275036 ITGAEP38570 1179 aa22.12■■□□□ 1.13
HMGN3-201ENST00000275036 RRBP1Q9P2E9 1410 aaKnown RBP22.12■■□□□ 1.13
HMGN3-201ENST00000275036 SCAF11Q99590 1463 aaKnown RBP22.11■■□□□ 1.13
HMGN3-201ENST00000275036 LTKP29376 864 aa22.11■■□□□ 1.13
HMGN3-201ENST00000275036 KDM5AP29375 1690 aaKnown RBP22.11■■□□□ 1.13
HMGN3-201ENST00000275036 GCC2Q8IWJ2 1684 aa22.1■■□□□ 1.13
HMGN3-201ENST00000275036 CPS1P31327 1500 aa22.1■■□□□ 1.13
HMGN3-201ENST00000275036 IDI1Q13907 227 aa22.09■■□□□ 1.13
HMGN3-201ENST00000275036 RPRD2Q5VT52 1461 aaKnown RBP22.08■■□□□ 1.12
HMGN3-201ENST00000275036 ADGRB3O60242 1522 aa22.07■■□□□ 1.12
HMGN3-201ENST00000275036 IQGAP3Q86VI3 1631 aa22.07■■□□□ 1.12
HMGN3-201ENST00000275036 TMEM2Q9UHN6 1383 aa22.07■■□□□ 1.12
HMGN3-201ENST00000275036 E9PCH4 1651 aa22.07■■□□□ 1.12
HMGN3-201ENST00000275036 TXNDC2Q86VQ3 553 aa22.04■■□□□ 1.12
HMGN3-201ENST00000275036 ALKQ9UM73 1620 aa22.02■■□□□ 1.12
HMGN3-201ENST00000275036 MYO5BQ9ULV0 1848 aa22.02■■□□□ 1.12
HMGN3-201ENST00000275036 UBAP1LF5GYI3 381 aa22.02■■□□□ 1.12
HMGN3-201ENST00000275036 LRRC7Q96NW7 1537 aa22■■□□□ 1.11
HMGN3-201ENST00000275036 STAG3Q9UJ98 1225 aa21.99■■□□□ 1.11
HMGN3-201ENST00000275036 TMEM131LA2VDJ0 1609 aa21.98■■□□□ 1.11
HMGN3-201ENST00000275036 SLC52A1Q9NWF4 448 aa21.98■■□□□ 1.11
HMGN3-201ENST00000275036 NUP155O75694 1391 aa21.98■■□□□ 1.11
HMGN3-201ENST00000275036 EID1Q9Y6B2 187 aa21.96■■□□□ 1.11
HMGN3-201ENST00000275036 ZFYVE9O95405 1425 aa21.96■■□□□ 1.11
HMGN3-201ENST00000275036 XIRP1Q702N8 1843 aaKnown RBP21.94■■□□□ 1.1
HMGN3-201ENST00000275036 NAIPQ13075 1403 aa21.93■■□□□ 1.1
HMGN3-201ENST00000275036 RIMS2Q9UQ26 1411 aa21.89■■□□□ 1.1
HMGN3-201ENST00000275036 SLC26A8Q96RN1 970 aa21.89■■□□□ 1.09
HMGN3-201ENST00000275036 PIP4K2BP78356 416 aa21.88■■□□□ 1.09
HMGN3-201ENST00000275036 SPHKAPQ2M3C7 1700 aa21.88■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms