RNA–Protein interactions for RNA: ENST00000268717.9

COPS3-201, Transcript of COP9 signalosome subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPS3, Length 1,641 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-201ENST00000268717 PLXNC1O60486 1568 aa22.45■■□□□ 1.18
COPS3-201ENST00000268717 MAST1Q9Y2H9 1570 aa22.44■■□□□ 1.18
COPS3-201ENST00000268717 TSPY4P0CV99 314 aa22.43■■□□□ 1.18
COPS3-201ENST00000268717 TSPY10P0CW01 314 aa22.43■■□□□ 1.18
COPS3-201ENST00000268717 A2MP01023 1474 aa22.42■■□□□ 1.18
COPS3-201ENST00000268717 TIMELESSQ9UNS1 1208 aa22.41■■□□□ 1.18
COPS3-201ENST00000268717 ANKRD50Q9ULJ7 1429 aa22.36■■□□□ 1.17
COPS3-201ENST00000268717 DHX29Q7Z478 1369 aaKnown RBP22.34■■□□□ 1.17
COPS3-201ENST00000268717 KIF15Q9NS87 1388 aa22.34■■□□□ 1.17
COPS3-201ENST00000268717 PLPPR3Q6T4P5 718 aa22.32■■□□□ 1.16
COPS3-201ENST00000268717 TRIM52Q96A61 297 aa22.31■■□□□ 1.16
COPS3-201ENST00000268717 C3P01024 1663 aa22.3■■□□□ 1.16
COPS3-201ENST00000268717 CNTLNQ9NXG0 1405 aa22.3■■□□□ 1.16
COPS3-201ENST00000268717 MPHOSPH9Q99550 1183 aa22.29■■□□□ 1.16
COPS3-201ENST00000268717 ESF1Q9H501 851 aaKnown RBP22.29■■□□□ 1.16
COPS3-201ENST00000268717 KDM5DQ9BY66 1539 aa22.28■■□□□ 1.16
COPS3-201ENST00000268717 MROH2AA6NES4 1674 aa22.28■■□□□ 1.16
COPS3-201ENST00000268717 CEBPAP49715 358 aaPredicted RBP22.28■■□□□ 1.16
COPS3-201ENST00000268717 SETD1BQ9UPS6 1966 aaKnown RBP22.27■■□□□ 1.16
COPS3-201ENST00000268717 LMTK3Q96Q04 1460 aa22.27■■□□□ 1.16
COPS3-201ENST00000268717 CLTCQ00610 1675 aaKnown RBP22.26■■□□□ 1.15
COPS3-201ENST00000268717 PZPP20742 1482 aa22.25■■□□□ 1.15
COPS3-201ENST00000268717 GGT6Q6P531 493 aa22.25■■□□□ 1.15
COPS3-201ENST00000268717 DUOX2Q9NRD8 1548 aa22.23■■□□□ 1.15
COPS3-201ENST00000268717 PREX1Q8TCU6 1659 aa22.23■■□□□ 1.15
COPS3-201ENST00000268717 SIN3AQ96ST3 1273 aa22.23■■□□□ 1.15
COPS3-201ENST00000268717 KIF3BO15066 747 aa22.22■■□□□ 1.15
COPS3-201ENST00000268717 PPP6R1Q9UPN7 881 aa22.22■■□□□ 1.15
COPS3-201ENST00000268717 ERBINQ96RT1 1412 aa22.22■■□□□ 1.15
COPS3-201ENST00000268717 EIF2AK4Q9P2K8 1649 aaKnown RBP22.21■■□□□ 1.15
COPS3-201ENST00000268717 ZMYM3Q14202 1370 aa22.19■■□□□ 1.14
COPS3-201ENST00000268717 ANKRD30BQ9BXX2 1392 aa22.19■■□□□ 1.14
COPS3-201ENST00000268717 SLC4A1APQ9BWU0 796 aaKnown RBP22.19■■□□□ 1.14
COPS3-201ENST00000268717 ZNF316A6NFI3 1004 aaPredicted RBP22.18■■□□□ 1.14
COPS3-201ENST00000268717 RNF17Q9BXT8 1623 aaKnown RBP22.18■■□□□ 1.14
COPS3-201ENST00000268717 FAM135AQ9P2D6 1515 aa22.18■■□□□ 1.14
COPS3-201ENST00000268717 NEUROD1Q13562 356 aa22.17■■□□□ 1.14
COPS3-201ENST00000268717 TONSLQ96HA7 1378 aa22.17■■□□□ 1.14
COPS3-201ENST00000268717 UNC13BO14795 1591 aa22.17■■□□□ 1.14
COPS3-201ENST00000268717 NUP155O75694 1391 aa22.15■■□□□ 1.14
COPS3-201ENST00000268717 NPATQ14207 1427 aa22.14■■□□□ 1.14
COPS3-201ENST00000268717 UHRF1BP1Q6BDS2 1440 aa22.13■■□□□ 1.13
COPS3-201ENST00000268717 RPRD2Q5VT52 1461 aaKnown RBP22.12■■□□□ 1.13
COPS3-201ENST00000268717 MROH1Q8NDA8 1641 aa22.11■■□□□ 1.13
COPS3-201ENST00000268717 PPP1R15AO75807 674 aaPredicted RBP22.11■■□□□ 1.13
COPS3-201ENST00000268717 HSPA2P54652 639 aa22.11■■□□□ 1.13
COPS3-201ENST00000268717 WASHC2CQ9Y4E1 1318 aa22.1■■□□□ 1.13
COPS3-201ENST00000268717 ZC3H13Q5T200 1668 aaKnown RBP22.09■■□□□ 1.13
COPS3-201ENST00000268717 ABCC3O15438 1527 aa22.07■■□□□ 1.12
COPS3-201ENST00000268717 IQGAP3Q86VI3 1631 aa22.06■■□□□ 1.12
COPS3-201ENST00000268717 PKD2Q13563 968 aa22.06■■□□□ 1.12
COPS3-201ENST00000268717 FOXD1Q16676 465 aa22.06■■□□□ 1.12
COPS3-201ENST00000268717 DEPDC5O75140 1603 aa22.06■■□□□ 1.12
COPS3-201ENST00000268717 PRDM15P57071 1507 aaPredicted RBP22.05■■□□□ 1.12
COPS3-201ENST00000268717 CEP152O94986 1710 aa22.05■■□□□ 1.12
COPS3-201ENST00000268717 MYO3AQ8NEV4 1616 aa22.05■■□□□ 1.12
COPS3-201ENST00000268717 ZNF142P52746 1687 aaPredicted RBP22.02■■□□□ 1.12
COPS3-201ENST00000268717 CAMSAP1Q5T5Y3 1602 aa22.01■■□□□ 1.11
COPS3-201ENST00000268717 STRCQ7RTU9 1775 aa22■■□□□ 1.11
COPS3-201ENST00000268717 FBXO31Q5XUX0 539 aaPredicted RBP21.98■■□□□ 1.11
COPS3-201ENST00000268717 CEP170BQ9Y4F5 1589 aaPredicted RBP21.98■■□□□ 1.11
COPS3-201ENST00000268717 CFAP65Q6ZU64 1925 aaKnown RBP21.98■■□□□ 1.11
COPS3-201ENST00000268717 TNRQ92752 1358 aa21.96■■□□□ 1.11
COPS3-201ENST00000268717 VWDEQ8N2E2 1590 aa21.96■■□□□ 1.11
COPS3-201ENST00000268717 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.95■■□□□ 1.1
COPS3-201ENST00000268717 KANK1Q14678 1352 aa21.94■■□□□ 1.1
COPS3-201ENST00000268717 SPATA31D1Q6ZQQ2 1576 aa21.94■■□□□ 1.1
COPS3-201ENST00000268717 DIEXFQ68CQ4 756 aaKnown RBP21.94■■□□□ 1.1
COPS3-201ENST00000268717 A2ML1A8K2U0 1454 aa21.93■■□□□ 1.1
COPS3-201ENST00000268717 ARHGAP31Q2M1Z3 1444 aa21.92■■□□□ 1.1
COPS3-201ENST00000268717 LMTK2Q8IWU2 1503 aa21.92■■□□□ 1.1
COPS3-201ENST00000268717 L3MBTL2Q969R5 705 aa21.92■■□□□ 1.1
COPS3-201ENST00000268717 ERVK-7P63135 1459 aa21.91■■□□□ 1.1
COPS3-201ENST00000268717 NLRP1Q9C000 1473 aa21.89■■□□□ 1.1
COPS3-201ENST00000268717 PLA2R1Q13018 1463 aa21.88■■□□□ 1.09
COPS3-201ENST00000268717 DMRT2Q9Y5R5 561 aa21.87■■□□□ 1.09
COPS3-201ENST00000268717 CCDC144AA2RUR9 1427 aa21.86■■□□□ 1.09
COPS3-201ENST00000268717 EFCAB6Q5THR3 1501 aa21.86■■□□□ 1.09
COPS3-201ENST00000268717 TET3O43151 1660 aa21.85■■□□□ 1.09
COPS3-201ENST00000268717 PTPRTO14522 1441 aa21.83■■□□□ 1.09
COPS3-201ENST00000268717 UGGT1Q9NYU2 1555 aa21.83■■□□□ 1.09
COPS3-201ENST00000268717 NCKAP5LQ9HCH0 1330 aa21.8■■□□□ 1.08
COPS3-201ENST00000268717 POLR1AO95602 1720 aaPredicted RBP21.79■■□□□ 1.08
COPS3-201ENST00000268717 TRPM2O94759 1503 aa21.79■■□□□ 1.08
COPS3-201ENST00000268717 E9PCH4 1651 aa21.79■■□□□ 1.08
COPS3-201ENST00000268717 UBR1Q8IWV7 1749 aa21.78■■□□□ 1.08
COPS3-201ENST00000268717 THEMISQ8N1K5 641 aaPredicted RBP21.78■■□□□ 1.08
COPS3-201ENST00000268717 NOS1P29475 1434 aa21.76■■□□□ 1.07
COPS3-201ENST00000268717 SYNMO15061 1565 aa21.76■■□□□ 1.07
COPS3-201ENST00000268717 PIK3C2BO00750 1634 aa21.74■■□□□ 1.07
COPS3-201ENST00000268717 NBPF8Q3BBV2 869 aa21.74■■□□□ 1.07
COPS3-201ENST00000268717 NEURL4Q96JN8 1562 aa21.74■■□□□ 1.07
COPS3-201ENST00000268717 SPHKAPQ2M3C7 1700 aa21.72■■□□□ 1.07
COPS3-201ENST00000268717 KDM5AP29375 1690 aaKnown RBP21.72■■□□□ 1.07
COPS3-201ENST00000268717 RALGAPBQ86X10 1494 aa21.7■■□□□ 1.06
COPS3-201ENST00000268717 ANKLE2Q86XL3 938 aa21.7■■□□□ 1.06
COPS3-201ENST00000268717 EIF4G2P78344 907 aaKnown RBP eCLIP21.69■■□□□ 1.06
COPS3-201ENST00000268717 IDI1Q13907 227 aa21.69■■□□□ 1.06
COPS3-201ENST00000268717 SPATA31E1Q6ZUB1 1445 aa21.69■■□□□ 1.06
COPS3-201ENST00000268717 STAC3Q96MF2 364 aa21.67■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms