RNA–Protein interactions for RNA: ENST00000254480.9

SMARCC1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCC1, Length 6,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-201ENST00000254480 PANK3Q9H999 370 aa23.42■■□□□ 1.34
SMARCC1-201ENST00000254480 PMFBP1Q8TBY8 1022 aa23.42■■□□□ 1.34
SMARCC1-201ENST00000254480 NGEFQ8N5V2 710 aa23.41■■□□□ 1.34
SMARCC1-201ENST00000254480 ANO8Q9HCE9 1232 aaPredicted RBP23.4■■□□□ 1.34
SMARCC1-201ENST00000254480 G3V3G9 751 aa23.38■■□□□ 1.33
SMARCC1-201ENST00000254480 FRAT2O75474 233 aaPredicted RBP23.38■■□□□ 1.33
SMARCC1-201ENST00000254480 DCAF8Q5TAQ9 597 aa23.38■■□□□ 1.33
SMARCC1-201ENST00000254480 TMX4Q9H1E5 349 aaPredicted RBP23.38■■□□□ 1.33
SMARCC1-201ENST00000254480 TCERG1O14776 1098 aaKnown RBP23.38■■□□□ 1.33
SMARCC1-201ENST00000254480 JPH4Q96JJ6 628 aa23.38■■□□□ 1.33
SMARCC1-201ENST00000254480 FOXD4L6Q3SYB3 417 aaPredicted RBP23.37■■□□□ 1.33
SMARCC1-201ENST00000254480 FOXD4L3Q6VB84 417 aaPredicted RBP23.37■■□□□ 1.33
SMARCC1-201ENST00000254480 NLRP13Q86W25 1043 aa23.37■■□□□ 1.33
SMARCC1-201ENST00000254480 CFAP44Q96MT7 982 aa23.37■■□□□ 1.33
SMARCC1-201ENST00000254480 GTF2E1P29083 439 aaPredicted RBP23.37■■□□□ 1.33
SMARCC1-201ENST00000254480 GPATCH3Q96I76 525 aa23.36■■□□□ 1.33
SMARCC1-201ENST00000254480 NECTIN2Q92692 538 aa23.36■■□□□ 1.33
SMARCC1-201ENST00000254480 SLC4A3P48751 1232 aa23.35■■□□□ 1.33
SMARCC1-201ENST00000254480 HMMRO75330 724 aa23.35■■□□□ 1.33
SMARCC1-201ENST00000254480 WIZO95785 1651 aa23.34■■□□□ 1.33
SMARCC1-201ENST00000254480 MINK1Q8N4C8 1332 aaPredicted RBP23.34■■□□□ 1.33
SMARCC1-201ENST00000254480 RILPL2Q969X0 211 aa23.33■■□□□ 1.33
SMARCC1-201ENST00000254480 RASSF8Q8NHQ8 419 aa23.33■■□□□ 1.32
SMARCC1-201ENST00000254480 RAPGEF2Q9Y4G8 1499 aa23.31■■□□□ 1.32
SMARCC1-201ENST00000254480 CYB5RLQ6IPT4 315 aa23.31■■□□□ 1.32
SMARCC1-201ENST00000254480 TSHZ2Q9NRE2 1034 aa23.31■■□□□ 1.32
SMARCC1-201ENST00000254480 EIF2S2P20042 333 aaKnown RBP23.28■■□□□ 1.32
SMARCC1-201ENST00000254480 ANKRD45Q5TZF3 282 aa23.28■■□□□ 1.32
SMARCC1-201ENST00000254480 KIAA2012Q0VF49 1180 aa23.27■■□□□ 1.32
SMARCC1-201ENST00000254480 VPS53Q5VIR6 699 aa23.27■■□□□ 1.32
SMARCC1-201ENST00000254480 SMARCA2P51531 1590 aa23.26■■□□□ 1.31
SMARCC1-201ENST00000254480 CCDC18Q5T9S5 1454 aa23.25■■□□□ 1.31
SMARCC1-201ENST00000254480 LMOD3Q0VAK6 560 aa23.24■■□□□ 1.31
SMARCC1-201ENST00000254480 CCDC144AA2RUR9 1427 aa23.24■■□□□ 1.31
SMARCC1-201ENST00000254480 COG3Q96JB2 828 aa23.24■■□□□ 1.31
SMARCC1-201ENST00000254480 MSH5O43196 834 aa23.24■■□□□ 1.31
SMARCC1-201ENST00000254480 EXOC6Q8TAG9 804 aa23.24■■□□□ 1.31
SMARCC1-201ENST00000254480 IPO9Q96P70 1041 aaKnown RBP23.24■■□□□ 1.31
SMARCC1-201ENST00000254480 EVA1CP58658 441 aa23.23■■□□□ 1.31
SMARCC1-201ENST00000254480 NOC3LQ8WTT2 800 aaKnown RBP23.23■■□□□ 1.31
SMARCC1-201ENST00000254480 COG6Q9Y2V7 657 aa23.23■■□□□ 1.31
SMARCC1-201ENST00000254480 HTATSF1O43719 755 aaKnown RBP23.23■■□□□ 1.31
SMARCC1-201ENST00000254480 MYBBP1AQ9BQG0 1328 aaKnown RBP23.22■■□□□ 1.31
SMARCC1-201ENST00000254480 GOLGA6L3A6NEY3 463 aa23.22■■□□□ 1.31
SMARCC1-201ENST00000254480 RUSC2Q8N2Y8 1516 aa23.22■■□□□ 1.31
SMARCC1-201ENST00000254480 KIF15Q9NS87 1388 aa23.22■■□□□ 1.31
SMARCC1-201ENST00000254480 CRBNQ96SW2 442 aa23.21■■□□□ 1.31
SMARCC1-201ENST00000254480 SYAP1Q96A49 352 aaPredicted RBP23.21■■□□□ 1.31
SMARCC1-201ENST00000254480 C1orf141Q5JVX7 400 aa23.21■■□□□ 1.31
SMARCC1-201ENST00000254480 APAF1O14727 1248 aa23.2■■□□□ 1.3
SMARCC1-201ENST00000254480 SYTL4Q96C24 671 aaPredicted RBP23.2■■□□□ 1.3
SMARCC1-201ENST00000254480 KIF16BQ96L93 1317 aa23.18■■□□□ 1.3
SMARCC1-201ENST00000254480 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP23.18■■□□□ 1.3
SMARCC1-201ENST00000254480 RAD21O60216 631 aa23.18■■□□□ 1.3
SMARCC1-201ENST00000254480 MARCH6O60337 910 aa23.16■■□□□ 1.3
SMARCC1-201ENST00000254480 SF3A1Q15459 793 aaKnown RBP23.16■■□□□ 1.3
SMARCC1-201ENST00000254480 CADPSQ9ULU8 1353 aa23.16■■□□□ 1.3
SMARCC1-201ENST00000254480 TEFQ10587 303 aa23.16■■□□□ 1.3
SMARCC1-201ENST00000254480 CHMP4AQ9BY43 222 aa23.16■■□□□ 1.3
SMARCC1-201ENST00000254480 PES1O00541 588 aaKnown RBP23.15■■□□□ 1.3
SMARCC1-201ENST00000254480 TPM4P67936 248 aa23.15■■□□□ 1.3
SMARCC1-201ENST00000254480 ST18O60284 1047 aa23.15■■□□□ 1.3
SMARCC1-201ENST00000254480 RSPH4AQ5TD94 716 aa23.15■■□□□ 1.3
SMARCC1-201ENST00000254480 CGNL1Q0VF96 1302 aa23.14■■□□□ 1.3
SMARCC1-201ENST00000254480 HDAC5Q9UQL6 1122 aa23.14■■□□□ 1.29
SMARCC1-201ENST00000254480 PDE3BQ13370 1112 aa23.14■■□□□ 1.29
SMARCC1-201ENST00000254480 PRM3Q9NNZ6 103 aa23.13■■□□□ 1.29
SMARCC1-201ENST00000254480 EVC2Q86UK5 1308 aa23.13■■□□□ 1.29
SMARCC1-201ENST00000254480 NUTM2GQ5VZR2 741 aa23.13■■□□□ 1.29
SMARCC1-201ENST00000254480 DHX57Q6P158 1386 aaKnown RBP23.12■■□□□ 1.29
SMARCC1-201ENST00000254480 PTMSP20962 102 aa23.12■■□□□ 1.29
SMARCC1-201ENST00000254480 USP47Q96K76 1375 aa23.12■■□□□ 1.29
SMARCC1-201ENST00000254480 H3BQV1 296 aa23.12■■□□□ 1.29
SMARCC1-201ENST00000254480 IFFO2Q5TF58 517 aa23.12■■□□□ 1.29
SMARCC1-201ENST00000254480 PRKRIP1Q9H875 184 aaPredicted RBP23.12■■□□□ 1.29
SMARCC1-201ENST00000254480 ZKSCAN2Q63HK3 967 aa23.11■■□□□ 1.29
SMARCC1-201ENST00000254480 VGFO15240 615 aaPredicted RBP23.11■■□□□ 1.29
SMARCC1-201ENST00000254480 WWC1Q8IX03 1113 aa23.11■■□□□ 1.29
SMARCC1-201ENST00000254480 HMOX1P09601 288 aa23.09■■□□□ 1.29
SMARCC1-201ENST00000254480 C9orf78Q9NZ63 289 aaPredicted RBP23.09■■□□□ 1.29
SMARCC1-201ENST00000254480 TTC5Q8N0Z6 440 aa23.09■■□□□ 1.29
SMARCC1-201ENST00000254480 MCTP1Q6DN14 999 aa23.09■■□□□ 1.29
SMARCC1-201ENST00000254480 TOP2AP11388 1531 aaKnown RBP23.09■■□□□ 1.29
SMARCC1-201ENST00000254480 ZNF644Q9H582 1327 aaPredicted RBP23.08■■□□□ 1.29
SMARCC1-201ENST00000254480 RRP1P56182 461 aaKnown RBP23.08■■□□□ 1.29
SMARCC1-201ENST00000254480 PDE4AP27815 886 aa23.08■■□□□ 1.29
SMARCC1-201ENST00000254480 RIPK4P57078 832 aa23.08■■□□□ 1.28
SMARCC1-201ENST00000254480 FAM184AQ8NB25 1140 aa23.07■■□□□ 1.28
SMARCC1-201ENST00000254480 PTPRGP23470 1445 aa23.07■■□□□ 1.28
SMARCC1-201ENST00000254480 PSME1Q06323 249 aa23.07■■□□□ 1.28
SMARCC1-201ENST00000254480 PHLDB1Q86UU1 1377 aa23.06■■□□□ 1.28
SMARCC1-201ENST00000254480 E9PSI1 815 aa23.06■■□□□ 1.28
SMARCC1-201ENST00000254480 FBXW7Q969H0 707 aa23.05■■□□□ 1.28
SMARCC1-201ENST00000254480 DIAPH1O60610 1272 aaKnown RBP23.04■■□□□ 1.28
SMARCC1-201ENST00000254480 CENPQQ7L2Z9 268 aaPredicted RBP23.04■■□□□ 1.28
SMARCC1-201ENST00000254480 CSPP1Q1MSJ5 1256 aa23.04■■□□□ 1.28
SMARCC1-201ENST00000254480 CCDC34Q96HJ3 373 aa23.04■■□□□ 1.28
SMARCC1-201ENST00000254480 DIAPH3Q9NSV4 1193 aa23.04■■□□□ 1.28
SMARCC1-201ENST00000254480 APPP05067 770 aa23.03■■□□□ 1.28
SMARCC1-201ENST00000254480 FOSBP53539 338 aa23.03■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms