RNA–Protein interactions for RNA: ENST00000250495.9

NEDD8-201, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NEDD8, Length 708 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-201ENST00000250495 NCKAP5LQ9HCH0 1330 aa33.11■■■□□ 2.89
NEDD8-201ENST00000250495 PKD2Q13563 968 aa33.11■■■□□ 2.89
NEDD8-201ENST00000250495 FAM135AQ9P2D6 1515 aa33.11■■■□□ 2.89
NEDD8-201ENST00000250495 ZNF142P52746 1687 aaPredicted RBP33.1■■■□□ 2.89
NEDD8-201ENST00000250495 CEP170BQ9Y4F5 1589 aaPredicted RBP33.1■■■□□ 2.89
NEDD8-201ENST00000250495 PLA2R1Q13018 1463 aa33.08■■■□□ 2.89
NEDD8-201ENST00000250495 KDM5DQ9BY66 1539 aa33.07■■■□□ 2.89
NEDD8-201ENST00000250495 FBXO31Q5XUX0 539 aaPredicted RBP33.06■■■□□ 2.88
NEDD8-201ENST00000250495 MAST1Q9Y2H9 1570 aa33.05■■■□□ 2.88
NEDD8-201ENST00000250495 A2ML1A8K2U0 1454 aa33.04■■■□□ 2.88
NEDD8-201ENST00000250495 TNRQ92752 1358 aa33.03■■■□□ 2.88
NEDD8-201ENST00000250495 PZPP20742 1482 aa33.03■■■□□ 2.88
NEDD8-201ENST00000250495 LTBP4Q8N2S1 1624 aa33.02■■■□□ 2.88
NEDD8-201ENST00000250495 TCOF1Q13428 1488 aaKnown RBP32.99■■■□□ 2.87
NEDD8-201ENST00000250495 DNMT1P26358 1616 aaKnown RBP32.97■■■□□ 2.87
NEDD8-201ENST00000250495 IQSEC2Q5JU85 1478 aa32.94■■■□□ 2.86
NEDD8-201ENST00000250495 RNF17Q9BXT8 1623 aaKnown RBP32.92■■■□□ 2.86
NEDD8-201ENST00000250495 EIF2AK4Q9P2K8 1649 aaKnown RBP32.91■■■□□ 2.86
NEDD8-201ENST00000250495 ZNF335Q9H4Z2 1342 aaPredicted RBP32.91■■■□□ 2.86
NEDD8-201ENST00000250495 THEMISQ8N1K5 641 aaPredicted RBP32.9■■■□□ 2.86
NEDD8-201ENST00000250495 DUOX2Q9NRD8 1548 aa32.89■■■□□ 2.86
NEDD8-201ENST00000250495 NLRP1Q9C000 1473 aa32.87■■■□□ 2.85
NEDD8-201ENST00000250495 PTPN23Q9H3S7 1636 aa32.87■■■□□ 2.85
NEDD8-201ENST00000250495 ABCC3O15438 1527 aa32.87■■■□□ 2.85
NEDD8-201ENST00000250495 ABCC5O15440 1437 aa32.86■■■□□ 2.85
NEDD8-201ENST00000250495 ZC3H13Q5T200 1668 aaKnown RBP32.86■■■□□ 2.85
NEDD8-201ENST00000250495 ANKLE2Q86XL3 938 aa32.85■■■□□ 2.85
NEDD8-201ENST00000250495 RRP7BPQ9NSQ0 103 aa32.84■■■□□ 2.85
NEDD8-201ENST00000250495 SHANK2Q9UPX8 1470 aa32.84■■■□□ 2.85
NEDD8-201ENST00000250495 KIF15Q9NS87 1388 aa32.83■■■□□ 2.85
NEDD8-201ENST00000250495 FGD6Q6ZV73 1430 aa32.82■■■□□ 2.84
NEDD8-201ENST00000250495 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP32.81■■■□□ 2.84
NEDD8-201ENST00000250495 UGGT1Q9NYU2 1555 aa32.8■■■□□ 2.84
NEDD8-201ENST00000250495 DAPK1P53355 1430 aa32.79■■■□□ 2.84
NEDD8-201ENST00000250495 MROH1Q8NDA8 1641 aa32.78■■■□□ 2.84
NEDD8-201ENST00000250495 POLR1AO95602 1720 aaPredicted RBP32.78■■■□□ 2.84
NEDD8-201ENST00000250495 CROCC2H7BZ55 1655 aa32.78■■■□□ 2.84
NEDD8-201ENST00000250495 ERBINQ96RT1 1412 aa32.77■■■□□ 2.84
NEDD8-201ENST00000250495 SPATA31D1Q6ZQQ2 1576 aa32.77■■■□□ 2.84
NEDD8-201ENST00000250495 ERVK-7P63135 1459 aa32.74■■■□□ 2.83
NEDD8-201ENST00000250495 NEURL4Q96JN8 1562 aa32.73■■■□□ 2.83
NEDD8-201ENST00000250495 CEP152O94986 1710 aa32.73■■■□□ 2.83
NEDD8-201ENST00000250495 CFAP65Q6ZU64 1925 aaKnown RBP32.73■■■□□ 2.83
NEDD8-201ENST00000250495 UBAP1LF5GYI3 381 aa32.72■■■□□ 2.83
NEDD8-201ENST00000250495 CHIC2Q9UKJ5 165 aa32.72■■■□□ 2.83
NEDD8-201ENST00000250495 ANKRD30AQ9BXX3 1397 aa32.71■■■□□ 2.83
NEDD8-201ENST00000250495 GRWD1Q9BQ67 446 aaKnown RBP eCLIP32.71■■■□□ 2.839e-8■■■□□ 14.9
NEDD8-201ENST00000250495 KANK1Q14678 1352 aa32.68■■■□□ 2.82
NEDD8-201ENST00000250495 ARHGAP31Q2M1Z3 1444 aa32.68■■■□□ 2.82
NEDD8-201ENST00000250495 MED14O60244 1454 aa32.67■■■□□ 2.82
NEDD8-201ENST00000250495 PRDM15P57071 1507 aaPredicted RBP32.67■■■□□ 2.82
NEDD8-201ENST00000250495 NPHP4O75161 1426 aaPredicted RBP32.67■■■□□ 2.82
NEDD8-201ENST00000250495 DEPDC5O75140 1603 aa32.66■■■□□ 2.82
NEDD8-201ENST00000250495 CPS1P31327 1500 aa32.63■■■□□ 2.81
NEDD8-201ENST00000250495 FAM50AQ14320 339 aaKnown RBP32.63■■■□□ 2.81
NEDD8-201ENST00000250495 DISP3Q9P2K9 1392 aa32.58■■■□□ 2.81
NEDD8-201ENST00000250495 UBR1Q8IWV7 1749 aa32.56■■■□□ 2.8
NEDD8-201ENST00000250495 IQGAP1P46940 1657 aa32.56■■■□□ 2.8
NEDD8-201ENST00000250495 VWDEQ8N2E2 1590 aa32.55■■■□□ 2.8
NEDD8-201ENST00000250495 TOM1O60784 492 aa32.55■■■□□ 2.8
NEDD8-201ENST00000250495 ADGRL2O95490 1459 aa32.54■■■□□ 2.8
NEDD8-201ENST00000250495 LMTK2Q8IWU2 1503 aa32.52■■■□□ 2.8
NEDD8-201ENST00000250495 TXNDC2Q86VQ3 553 aa32.52■■■□□ 2.8
NEDD8-201ENST00000250495 STAG3Q9UJ98 1225 aa32.5■■■□□ 2.79
NEDD8-201ENST00000250495 EID1Q9Y6B2 187 aa32.5■■■□□ 2.79
NEDD8-201ENST00000250495 SCAF11Q99590 1463 aaKnown RBP32.48■■■□□ 2.79
NEDD8-201ENST00000250495 LTKP29376 864 aa32.48■■■□□ 2.79
NEDD8-201ENST00000250495 ARHGAP23Q9P227 1491 aa32.47■■■□□ 2.79
NEDD8-201ENST00000250495 SLIT1O75093 1534 aa32.46■■■□□ 2.79
NEDD8-201ENST00000250495 SCAF1Q9H7N4 1312 aaKnown RBP32.46■■■□□ 2.79
NEDD8-201ENST00000250495 ANKRD50Q9ULJ7 1429 aa32.45■■■□□ 2.79
NEDD8-201ENST00000250495 IDI1Q13907 227 aa32.45■■■□□ 2.79
NEDD8-201ENST00000250495 PIP4K2BP78356 416 aa32.44■■■□□ 2.78
NEDD8-201ENST00000250495 PIK3C2BO00750 1634 aa32.42■■■□□ 2.78
NEDD8-201ENST00000250495 TMEM2Q9UHN6 1383 aa32.41■■■□□ 2.78
NEDD8-201ENST00000250495 SLC52A1Q9NWF4 448 aa32.39■■■□□ 2.78
NEDD8-201ENST00000250495 EFCAB6Q5THR3 1501 aa32.39■■■□□ 2.78
NEDD8-201ENST00000250495 NOS1P29475 1434 aa32.38■■■□□ 2.77
NEDD8-201ENST00000250495 KDM5AP29375 1690 aaKnown RBP32.37■■■□□ 2.77
NEDD8-201ENST00000250495 STRCP1A6NGW2 1772 aa32.36■■■□□ 2.77
NEDD8-201ENST00000250495 LRRC7Q96NW7 1537 aa32.36■■■□□ 2.77
NEDD8-201ENST00000250495 HSPA1LP34931 641 aa32.34■■■□□ 2.77
NEDD8-201ENST00000250495 ILDR2Q71H61 639 aa32.34■■■□□ 2.77
NEDD8-201ENST00000250495 SYNMO15061 1565 aa32.33■■■□□ 2.77
NEDD8-201ENST00000250495 RPRD2Q5VT52 1461 aaKnown RBP32.32■■■□□ 2.76
NEDD8-201ENST00000250495 ROCK1Q13464 1354 aa32.3■■■□□ 2.76
NEDD8-201ENST00000250495 TET3O43151 1660 aa32.25■■■□□ 2.75
NEDD8-201ENST00000250495 ADGRB3O60242 1522 aa32.25■■■□□ 2.75
NEDD8-201ENST00000250495 ITGAEP38570 1179 aa32.23■■■□□ 2.75
NEDD8-201ENST00000250495 PPARGC1BQ86YN6 1023 aaKnown RBP32.23■■■□□ 2.75
NEDD8-201ENST00000250495 ALKQ9UM73 1620 aa32.22■■■□□ 2.75
NEDD8-201ENST00000250495 UNC13BO14795 1591 aa32.21■■■□□ 2.75
NEDD8-201ENST00000250495 HDGFP51858 240 aaKnown RBP32.21■■■□□ 2.75
NEDD8-201ENST00000250495 KCNA6P17658 529 aa32.2■■■□□ 2.75
NEDD8-201ENST00000250495 SLC26A8Q96RN1 970 aa32.2■■■□□ 2.75
NEDD8-201ENST00000250495 GCC2Q8IWJ2 1684 aa32.19■■■□□ 2.74
NEDD8-201ENST00000250495 SOCS7O14512 581 aa32.19■■■□□ 2.74
NEDD8-201ENST00000250495 BCANQ96GW7 911 aa32.19■■■□□ 2.74
NEDD8-201ENST00000250495 NUP155O75694 1391 aa32.14■■■□□ 2.74
NEDD8-201ENST00000250495 PPP1R15AO75807 674 aaPredicted RBP32.11■■■□□ 2.73
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms