RNA–Protein interactions for RNA: ENST00000230085.12

SNX3-201, Transcript of sorting nexin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX3, Length 1,755 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3-201ENST00000230085 KIF15Q9NS87 1388 aa29.13■■■□□ 2.25
SNX3-201ENST00000230085 A2MP01023 1474 aa29.13■■■□□ 2.25
SNX3-201ENST00000230085 DHX29Q7Z478 1369 aaKnown RBP29.11■■■□□ 2.25
SNX3-201ENST00000230085 ROCK1Q13464 1354 aa29.1■■■□□ 2.25
SNX3-201ENST00000230085 ARID4BQ4LE39 1312 aaPredicted RBP29.1■■■□□ 2.25
SNX3-201ENST00000230085 TSHZ2Q9NRE2 1034 aa29.09■■■□□ 2.25
SNX3-201ENST00000230085 REREQ9P2R6 1566 aa29.07■■■□□ 2.24
SNX3-201ENST00000230085 DUOX2Q9NRD8 1548 aa29.05■■■□□ 2.24
SNX3-201ENST00000230085 CCER2I3L3R5 266 aa29.01■■■□□ 2.23
SNX3-201ENST00000230085 KIF3BO15066 747 aa29.01■■■□□ 2.23
SNX3-201ENST00000230085 MLECQ14165 292 aa29.01■■■□□ 2.23
SNX3-201ENST00000230085 AGLP35573 1532 aa29■■■□□ 2.23
SNX3-201ENST00000230085 PPP1R15AO75807 674 aaPredicted RBP28.99■■■□□ 2.23
SNX3-201ENST00000230085 ANKRD50Q9ULJ7 1429 aa28.98■■■□□ 2.23
SNX3-201ENST00000230085 ERBINQ96RT1 1412 aa28.97■■■□□ 2.23
SNX3-201ENST00000230085 NAIPQ13075 1403 aa28.97■■■□□ 2.23
SNX3-201ENST00000230085 GGT6Q6P531 493 aa28.96■■■□□ 2.23
SNX3-201ENST00000230085 HFM1A2PYH4 1435 aa28.95■■■□□ 2.23
SNX3-201ENST00000230085 BCORL1Q5H9F3 1711 aa28.91■■■□□ 2.22
SNX3-201ENST00000230085 EIF2AK4Q9P2K8 1649 aaKnown RBP28.91■■■□□ 2.22
SNX3-201ENST00000230085 GCC2Q8IWJ2 1684 aa28.89■■■□□ 2.21
SNX3-201ENST00000230085 ANP32EQ9BTT0 268 aa28.88■■■□□ 2.21
SNX3-201ENST00000230085 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.85■■■□□ 2.21
SNX3-201ENST00000230085 KDM4FA0A1W2PPD8 638 aa28.85■■■□□ 2.21
SNX3-201ENST00000230085 RNF17Q9BXT8 1623 aaKnown RBP28.83■■■□□ 2.21
SNX3-201ENST00000230085 ADAMTSL3P82987 1691 aa28.82■■■□□ 2.2
SNX3-201ENST00000230085 MROH1Q8NDA8 1641 aa28.81■■■□□ 2.2
SNX3-201ENST00000230085 DEPDC5O75140 1603 aa28.79■■■□□ 2.2
SNX3-201ENST00000230085 MADDQ8WXG6 1647 aa28.78■■■□□ 2.2
SNX3-201ENST00000230085 PPP6R1Q9UPN7 881 aa28.78■■■□□ 2.2
SNX3-201ENST00000230085 ESF1Q9H501 851 aaKnown RBP28.78■■■□□ 2.2
SNX3-201ENST00000230085 WASHC2CQ9Y4E1 1318 aa28.77■■■□□ 2.2
SNX3-201ENST00000230085 FER1L4A9Z1Z3 1794 aa28.77■■■□□ 2.2
SNX3-201ENST00000230085 PRDM15P57071 1507 aaPredicted RBP28.76■■■□□ 2.19
SNX3-201ENST00000230085 DDX10Q13206 875 aaKnown RBP28.75■■■□□ 2.19
SNX3-201ENST00000230085 SIN3AQ96ST3 1273 aa28.74■■■□□ 2.19
SNX3-201ENST00000230085 UNC13BO14795 1591 aa28.73■■■□□ 2.19
SNX3-201ENST00000230085 NUP155O75694 1391 aa28.72■■■□□ 2.19
SNX3-201ENST00000230085 KANK1Q14678 1352 aa28.72■■■□□ 2.19
SNX3-201ENST00000230085 TRIM52Q96A61 297 aa28.72■■■□□ 2.19
SNX3-201ENST00000230085 CLTCQ00610 1675 aaKnown RBP28.72■■■□□ 2.19
SNX3-201ENST00000230085 RIMS1Q86UR5 1692 aaKnown RBP28.71■■■□□ 2.19
SNX3-201ENST00000230085 KDM5DQ9BY66 1539 aa28.71■■■□□ 2.19
SNX3-201ENST00000230085 ABCC3O15438 1527 aa28.69■■■□□ 2.18
SNX3-201ENST00000230085 CEP152O94986 1710 aa28.69■■■□□ 2.18
SNX3-201ENST00000230085 VWDEQ8N2E2 1590 aa28.68■■■□□ 2.18
SNX3-201ENST00000230085 CNTLNQ9NXG0 1405 aa28.68■■■□□ 2.18
SNX3-201ENST00000230085 ANP32CO43423 234 aa28.67■■■□□ 2.18
SNX3-201ENST00000230085 PLPPR3Q6T4P5 718 aa28.67■■■□□ 2.18
SNX3-201ENST00000230085 CEBPAP49715 358 aaPredicted RBP28.67■■■□□ 2.18
SNX3-201ENST00000230085 ZMYM3Q14202 1370 aa28.67■■■□□ 2.18
SNX3-201ENST00000230085 FKBP8Q14318 412 aa28.65■■■□□ 2.18
SNX3-201ENST00000230085 FAM135AQ9P2D6 1515 aa28.65■■■□□ 2.18
SNX3-201ENST00000230085 NEFLP07196 543 aa28.65■■■□□ 2.18
SNX3-201ENST00000230085 PTPRMP28827 1452 aa28.64■■■□□ 2.18
SNX3-201ENST00000230085 ZC3H13Q5T200 1668 aaKnown RBP28.64■■■□□ 2.18
SNX3-201ENST00000230085 IQGAP3Q86VI3 1631 aa28.63■■■□□ 2.17
SNX3-201ENST00000230085 TONSLQ96HA7 1378 aa28.61■■■□□ 2.17
SNX3-201ENST00000230085 MROH2AA6NES4 1674 aa28.61■■■□□ 2.17
SNX3-201ENST00000230085 LMTK2Q8IWU2 1503 aa28.6■■■□□ 2.17
SNX3-201ENST00000230085 CAMSAP1Q5T5Y3 1602 aa28.59■■■□□ 2.17
SNX3-201ENST00000230085 C3P01024 1663 aa28.59■■■□□ 2.17
SNX3-201ENST00000230085 PZPP20742 1482 aa28.57■■■□□ 2.16
SNX3-201ENST00000230085 CFAP65Q6ZU64 1925 aaKnown RBP28.56■■■□□ 2.16
SNX3-201ENST00000230085 FBXO31Q5XUX0 539 aaPredicted RBP28.56■■■□□ 2.16
SNX3-201ENST00000230085 SLC4A1APQ9BWU0 796 aaKnown RBP28.56■■■□□ 2.16
SNX3-201ENST00000230085 TET3O43151 1660 aa28.55■■■□□ 2.16
SNX3-201ENST00000230085 NPATQ14207 1427 aa28.54■■■□□ 2.16
SNX3-201ENST00000230085 MPHOSPH9Q99550 1183 aa28.54■■■□□ 2.16
SNX3-201ENST00000230085 EFCAB6Q5THR3 1501 aa28.53■■■□□ 2.16
SNX3-201ENST00000230085 ARHGAP31Q2M1Z3 1444 aa28.53■■■□□ 2.16
SNX3-201ENST00000230085 ERICH6BQ5W0A0 696 aa28.5■■■□□ 2.15
SNX3-201ENST00000230085 PKD2Q13563 968 aa28.5■■■□□ 2.15
SNX3-201ENST00000230085 E9PCH4 1651 aa28.49■■■□□ 2.15
SNX3-201ENST00000230085 FOXD1Q16676 465 aa28.47■■■□□ 2.15
SNX3-201ENST00000230085 RBM19Q9Y4C8 960 aaKnown RBP28.47■■■□□ 2.15
SNX3-201ENST00000230085 RPRD2Q5VT52 1461 aaKnown RBP28.45■■■□□ 2.14
SNX3-201ENST00000230085 ERVK-7P63135 1459 aa28.43■■■□□ 2.14
SNX3-201ENST00000230085 PREX1Q8TCU6 1659 aa28.43■■■□□ 2.14
SNX3-201ENST00000230085 SPATA31D1Q6ZQQ2 1576 aa28.41■■■□□ 2.14
SNX3-201ENST00000230085 SETD1BQ9UPS6 1966 aaKnown RBP28.4■■■□□ 2.14
SNX3-201ENST00000230085 BCANQ96GW7 911 aa28.39■■■□□ 2.14
SNX3-201ENST00000230085 NOS1P29475 1434 aa28.39■■■□□ 2.13
SNX3-201ENST00000230085 TNRQ92752 1358 aa28.39■■■□□ 2.13
SNX3-201ENST00000230085 POLR1AO95602 1720 aaPredicted RBP28.37■■■□□ 2.13
SNX3-201ENST00000230085 AEBP2Q6ZN18 517 aaPredicted RBP28.37■■■□□ 2.13
SNX3-201ENST00000230085 FANCIQ9NVI1 1328 aa28.35■■■□□ 2.13
SNX3-201ENST00000230085 SYNMO15061 1565 aa28.34■■■□□ 2.13
SNX3-201ENST00000230085 PTPRTO14522 1441 aa28.33■■■□□ 2.13
SNX3-201ENST00000230085 PLA2R1Q13018 1463 aa28.32■■■□□ 2.12
SNX3-201ENST00000230085 SPHKAPQ2M3C7 1700 aa28.32■■■□□ 2.12
SNX3-201ENST00000230085 IDI1Q13907 227 aa28.31■■■□□ 2.12
SNX3-201ENST00000230085 UGGT1Q9NYU2 1555 aa28.29■■■□□ 2.12
SNX3-201ENST00000230085 MYO3AQ8NEV4 1616 aa28.28■■■□□ 2.12
SNX3-201ENST00000230085 SLC52A1Q9NWF4 448 aa28.27■■■□□ 2.12
SNX3-201ENST00000230085 UHRF1BP1Q6BDS2 1440 aa28.27■■■□□ 2.12
SNX3-201ENST00000230085 NLRP1Q9C000 1473 aa28.25■■■□□ 2.11
SNX3-201ENST00000230085 TRPM2O94759 1503 aa28.25■■■□□ 2.11
SNX3-201ENST00000230085 HIRIP3Q9BW71 556 aaPredicted RBP28.24■■■□□ 2.11
SNX3-201ENST00000230085 ANKRD30BQ9BXX2 1392 aa28.24■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms