RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 HECW2Q9P2P5 1572 aa26.11■■□□□ 1.77
VIM-201ENST00000224237 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.11■■□□□ 1.772e-9■■□□□ 12.6
VIM-201ENST00000224237 RICTORQ6R327 1708 aa26.11■■□□□ 1.77
VIM-201ENST00000224237 MLH3Q9UHC1 1453 aa26.1■■□□□ 1.77
VIM-201ENST00000224237 EIF2AK4Q9P2K8 1649 aaKnown RBP26.1■■□□□ 1.77
VIM-201ENST00000224237 DEPDC5O75140 1603 aa26.07■■□□□ 1.76
VIM-201ENST00000224237 DHX29Q7Z478 1369 aaKnown RBP26.07■■□□□ 1.76
VIM-201ENST00000224237 FRMPD1Q5SYB0 1578 aa26.07■■□□□ 1.76
VIM-201ENST00000224237 TEX14Q8IWB6 1497 aa26.06■■□□□ 1.76
VIM-201ENST00000224237 ABCA6Q8N139 1617 aa26.05■■□□□ 1.76
VIM-201ENST00000224237 A2MP01023 1474 aa26.01■■□□□ 1.75
VIM-201ENST00000224237 KIF3BO15066 747 aa26■■□□□ 1.75
VIM-201ENST00000224237 DIP2CQ9Y2E4 1556 aa25.98■■□□□ 1.75
VIM-201ENST00000224237 YEATS2Q9ULM3 1422 aa25.97■■□□□ 1.75
VIM-201ENST00000224237 PRDM15P57071 1507 aaPredicted RBP25.97■■□□□ 1.75
VIM-201ENST00000224237 L3MBTL2Q969R5 705 aa25.97■■□□□ 1.75
VIM-201ENST00000224237 DNAJC5Q9H3Z4 198 aa25.97■■□□□ 1.75
VIM-201ENST00000224237 MROH1Q8NDA8 1641 aa25.96■■□□□ 1.75
VIM-201ENST00000224237 VWDEQ8N2E2 1590 aa25.96■■□□□ 1.75
VIM-201ENST00000224237 KANK1Q14678 1352 aa25.95■■□□□ 1.75
VIM-201ENST00000224237 ZMYM4Q5VZL5 1548 aa25.94■■□□□ 1.74
VIM-201ENST00000224237 DIEXFQ68CQ4 756 aaKnown RBP25.94■■□□□ 1.74
VIM-201ENST00000224237 RNF17Q9BXT8 1623 aaKnown RBP25.92■■□□□ 1.74
VIM-201ENST00000224237 COL17A1Q9UMD9 1497 aaPredicted RBP25.92■■□□□ 1.74
VIM-201ENST00000224237 BCORL1Q5H9F3 1711 aa25.92■■□□□ 1.74
VIM-201ENST00000224237 TET3O43151 1660 aa25.92■■□□□ 1.74
VIM-201ENST00000224237 ATP10AO60312 1499 aa25.91■■□□□ 1.74
VIM-201ENST00000224237 CCDC144AA2RUR9 1427 aa25.89■■□□□ 1.74
VIM-201ENST00000224237 E9PCH4 1651 aa25.89■■□□□ 1.73
VIM-201ENST00000224237 PLA2R1Q13018 1463 aa25.87■■□□□ 1.73
VIM-201ENST00000224237 LMTK2Q8IWU2 1503 aa25.83■■□□□ 1.73
VIM-201ENST00000224237 GGT6Q6P531 493 aa25.82■■□□□ 1.72
VIM-201ENST00000224237 CEP152O94986 1710 aa25.81■■□□□ 1.72
VIM-201ENST00000224237 TRHP20396 242 aaPredicted RBP25.81■■□□□ 1.72
VIM-201ENST00000224237 SPHKAPQ2M3C7 1700 aa25.8■■□□□ 1.72
VIM-201ENST00000224237 TRPM2O94759 1503 aa25.8■■□□□ 1.72
VIM-201ENST00000224237 EFCAB6Q5THR3 1501 aa25.79■■□□□ 1.72
VIM-201ENST00000224237 PTPRTO14522 1441 aa25.78■■□□□ 1.72
VIM-201ENST00000224237 NBPF8Q3BBV2 869 aa25.76■■□□□ 1.71
VIM-201ENST00000224237 UHRF1BP1Q6BDS2 1440 aa25.75■■□□□ 1.71
VIM-201ENST00000224237 REREQ9P2R6 1566 aa25.73■■□□□ 1.71
VIM-201ENST00000224237 SIGLEC1Q9BZZ2 1709 aa25.73■■□□□ 1.71
VIM-201ENST00000224237 ABCC3O15438 1527 aa25.73■■□□□ 1.71
VIM-201ENST00000224237 ARHGEF40Q8TER5 1519 aa25.73■■□□□ 1.71
VIM-201ENST00000224237 ZC3H13Q5T200 1668 aaKnown RBP25.69■■□□□ 1.7
VIM-201ENST00000224237 WASHC2CQ9Y4E1 1318 aa25.69■■□□□ 1.7
VIM-201ENST00000224237 CLTCL1P53675 1640 aa25.68■■□□□ 1.7
VIM-201ENST00000224237 DCAF11Q8TEB1 546 aa25.67■■□□□ 1.7
VIM-201ENST00000224237 EIF4G2P78344 907 aaKnown RBP eCLIP25.66■■□□□ 1.7
VIM-201ENST00000224237 CAMSAP1Q5T5Y3 1602 aa25.66■■□□□ 1.7
VIM-201ENST00000224237 NPATQ14207 1427 aa25.66■■□□□ 1.7
VIM-201ENST00000224237 RALGAPBQ86X10 1494 aa25.65■■□□□ 1.7
VIM-201ENST00000224237 SPATA31E1Q6ZUB1 1445 aa25.65■■□□□ 1.7
VIM-201ENST00000224237 RGL3Q3MIN7 710 aa25.65■■□□□ 1.7
VIM-201ENST00000224237 AGLP35573 1532 aa25.65■■□□□ 1.7
VIM-201ENST00000224237 UGGT1Q9NYU2 1555 aa25.64■■□□□ 1.7
VIM-201ENST00000224237 ZNF326Q5BKZ1 582 aaKnown RBP25.64■■□□□ 1.69
VIM-201ENST00000224237 HIRIP3Q9BW71 556 aaPredicted RBP25.64■■□□□ 1.69
VIM-201ENST00000224237 NEURL4Q96JN8 1562 aa25.64■■□□□ 1.69
VIM-201ENST00000224237 CFAP65Q6ZU64 1925 aaKnown RBP25.62■■□□□ 1.69
VIM-201ENST00000224237 KDM2AQ9Y2K7 1162 aa25.62■■□□□ 1.69
VIM-201ENST00000224237 HSPA5P11021 654 aaKnown RBP25.61■■□□□ 1.69
VIM-201ENST00000224237 PRAG1Q86YV5 1406 aa25.6■■□□□ 1.69
VIM-201ENST00000224237 ARHGAP31Q2M1Z3 1444 aa25.58■■□□□ 1.69
VIM-201ENST00000224237 CNTLNQ9NXG0 1405 aa25.58■■□□□ 1.69
VIM-201ENST00000224237 KIF1BO60333 1816 aa25.56■■□□□ 1.68
VIM-201ENST00000224237 TRPM1Q7Z4N2 1603 aa25.56■■□□□ 1.68
VIM-201ENST00000224237 MLECQ14165 292 aa25.55■■□□□ 1.68
VIM-201ENST00000224237 STAC3Q96MF2 364 aa25.53■■□□□ 1.68
VIM-201ENST00000224237 PPP6R1Q9UPN7 881 aa25.53■■□□□ 1.68
VIM-201ENST00000224237 NOS1P29475 1434 aa25.52■■□□□ 1.68
VIM-201ENST00000224237 USP47Q96K76 1375 aa25.51■■□□□ 1.67
VIM-201ENST00000224237 CLTCQ00610 1675 aaKnown RBP25.5■■□□□ 1.67
VIM-201ENST00000224237 ROCK2O75116 1388 aaKnown RBP25.49■■□□□ 1.67
VIM-201ENST00000224237 SYNMO15061 1565 aa25.49■■□□□ 1.67
VIM-201ENST00000224237 MROH2AA6NES4 1674 aa25.49■■□□□ 1.67
VIM-201ENST00000224237 MIER1Q8N108 512 aa25.49■■□□□ 1.67
VIM-201ENST00000224237 CARD11Q9BXL7 1154 aa25.49■■□□□ 1.67
VIM-201ENST00000224237 ADGRB3O60242 1522 aa25.48■■□□□ 1.67
VIM-201ENST00000224237 DDX10Q13206 875 aaKnown RBP25.47■■□□□ 1.67
VIM-201ENST00000224237 MADDQ8WXG6 1647 aa25.47■■□□□ 1.67
VIM-201ENST00000224237 LAMC1P11047 1609 aa25.47■■□□□ 1.67
VIM-201ENST00000224237 PIK3C2BO00750 1634 aa25.46■■□□□ 1.67
VIM-201ENST00000224237 ARID4BQ4LE39 1312 aaPredicted RBP25.46■■□□□ 1.67
VIM-201ENST00000224237 GPRASP1Q5JY77 1395 aa25.46■■□□□ 1.67
VIM-201ENST00000224237 PREX1Q8TCU6 1659 aa25.45■■□□□ 1.66
VIM-201ENST00000224237 POLR1AO95602 1720 aaPredicted RBP25.45■■□□□ 1.66
VIM-201ENST00000224237 IFT172Q9UG01 1749 aa25.43■■□□□ 1.66
VIM-201ENST00000224237 MYOM2P54296 1465 aa25.43■■□□□ 1.66
VIM-201ENST00000224237 WASHC2AQ641Q2 1341 aa25.43■■□□□ 1.66
VIM-201ENST00000224237 FBXO31Q5XUX0 539 aaPredicted RBP25.42■■□□□ 1.66
VIM-201ENST00000224237 CHGAP10645 457 aaKnown RBP25.41■■□□□ 1.66
VIM-201ENST00000224237 ERVK-7P63135 1459 aa25.39■■□□□ 1.65
VIM-201ENST00000224237 CCDC7Q96M83 1385 aa25.37■■□□□ 1.65
VIM-201ENST00000224237 SLC52A1Q9NWF4 448 aa25.37■■□□□ 1.65
VIM-201ENST00000224237 NBPF1Q3BBV0 1214 aa25.36■■□□□ 1.65
VIM-201ENST00000224237 KIAA1210Q9ULL0 1709 aa25.36■■□□□ 1.65
VIM-201ENST00000224237 IDI1Q13907 227 aa25.34■■□□□ 1.65
VIM-201ENST00000224237 C11orf95C9JLR9 678 aaPredicted RBP25.34■■□□□ 1.65
VIM-201ENST00000224237 PPLO60437 1756 aa25.34■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms