RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 CHMP3Q9Y3E7 222 aa16.89■□□□□ 0.3
SF3A1-201ENST00000215793 AMPHP49418 695 aa16.89■□□□□ 0.29
SF3A1-201ENST00000215793 TMX4Q9H1E5 349 aaPredicted RBP16.89■□□□□ 0.29
SF3A1-201ENST00000215793 ST18O60284 1047 aa16.88■□□□□ 0.29
SF3A1-201ENST00000215793 KIF3AQ9Y496 699 aa16.88■□□□□ 0.29
SF3A1-201ENST00000215793 FHOD3Q2V2M9 1422 aa16.88■□□□□ 0.29
SF3A1-201ENST00000215793 TSHZ2Q9NRE2 1034 aa16.88■□□□□ 0.29
SF3A1-201ENST00000215793 HSP90B1P14625 803 aaKnown RBP16.87■□□□□ 0.29
SF3A1-201ENST00000215793 ST20-MTHFSA0A0A6YYL1 179 aa16.86■□□□□ 0.29
SF3A1-201ENST00000215793 CCDC144AA2RUR9 1427 aa16.85■□□□□ 0.29
SF3A1-201ENST00000215793 TRAK1Q9UPV9 953 aa16.84■□□□□ 0.29
SF3A1-201ENST00000215793 PHF14O94880 888 aa16.84■□□□□ 0.29
SF3A1-201ENST00000215793 CENPQQ7L2Z9 268 aaPredicted RBP16.84■□□□□ 0.29
SF3A1-201ENST00000215793 CADPSQ9ULU8 1353 aa16.84■□□□□ 0.29
SF3A1-201ENST00000215793 JPH4Q96JJ6 628 aa16.84■□□□□ 0.29
SF3A1-201ENST00000215793 UACAQ9BZF9 1416 aa16.83■□□□□ 0.29
SF3A1-201ENST00000215793 KIF16BQ96L93 1317 aa16.83■□□□□ 0.29
SF3A1-201ENST00000215793 PANK3Q9H999 370 aa16.83■□□□□ 0.28
SF3A1-201ENST00000215793 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.82■□□□□ 0.28
SF3A1-201ENST00000215793 E9PSI1 815 aa16.82■□□□□ 0.28
SF3A1-201ENST00000215793 CHMP4CQ96CF2 233 aa16.82■□□□□ 0.28
SF3A1-201ENST00000215793 USP35Q9P2H5 1018 aa16.81■□□□□ 0.28
SF3A1-201ENST00000215793 CGNL1Q0VF96 1302 aa16.8■□□□□ 0.28
SF3A1-201ENST00000215793 VGFO15240 615 aaPredicted RBP16.8■□□□□ 0.28
SF3A1-201ENST00000215793 PRKRIP1Q9H875 184 aaPredicted RBP16.8■□□□□ 0.28
SF3A1-201ENST00000215793 DDX11L8A8MPP1 907 aa16.8■□□□□ 0.28
SF3A1-201ENST00000215793 NUTM2DQ5VT03 806 aaPredicted RBP16.8■□□□□ 0.28
SF3A1-201ENST00000215793 TOP2AP11388 1531 aaKnown RBP16.8■□□□□ 0.28
SF3A1-201ENST00000215793 NGEFQ8N5V2 710 aa16.8■□□□□ 0.28
SF3A1-201ENST00000215793 ZKSCAN2Q63HK3 967 aa16.79■□□□□ 0.28
SF3A1-201ENST00000215793 RASSF8Q8NHQ8 419 aa16.79■□□□□ 0.28
SF3A1-201ENST00000215793 NOC3LQ8WTT2 800 aaKnown RBP16.79■□□□□ 0.28
SF3A1-201ENST00000215793 FAM161AQ3B820 660 aa16.79■□□□□ 0.28
SF3A1-201ENST00000215793 LTV1Q96GA3 475 aaPredicted RBP16.79■□□□□ 0.28
SF3A1-201ENST00000215793 DHX57Q6P158 1386 aaKnown RBP16.78■□□□□ 0.28
SF3A1-201ENST00000215793 CCDC9Q9Y3X0 531 aaKnown RBP16.78■□□□□ 0.28
SF3A1-201ENST00000215793 EVC2Q86UK5 1308 aa16.78■□□□□ 0.28
SF3A1-201ENST00000215793 NOL8Q76FK4 1167 aaKnown RBP16.78■□□□□ 0.28
SF3A1-201ENST00000215793 RRP7AQ9Y3A4 280 aaKnown RBP16.78■□□□□ 0.28
SF3A1-201ENST00000215793 SF3A1Q15459 793 aaKnown RBP16.77■□□□□ 0.28
SF3A1-201ENST00000215793 ATP6V1DQ9Y5K8 247 aa16.77■□□□□ 0.28
SF3A1-201ENST00000215793 ZBED9Q6R2W3 1325 aa16.77■□□□□ 0.28
SF3A1-201ENST00000215793 COG3Q96JB2 828 aa16.77■□□□□ 0.27
SF3A1-201ENST00000215793 FOXD4L1Q9NU39 408 aa16.76■□□□□ 0.27
SF3A1-201ENST00000215793 TOMM22Q9NS69 142 aa16.76■□□□□ 0.27
SF3A1-201ENST00000215793 GTF2E1P29083 439 aaPredicted RBP16.75■□□□□ 0.27
SF3A1-201ENST00000215793 PDE4AP27815 886 aa16.75■□□□□ 0.27
SF3A1-201ENST00000215793 FRAT2O75474 233 aaPredicted RBP16.74■□□□□ 0.27
SF3A1-201ENST00000215793 RRP1P56182 461 aaKnown RBP16.74■□□□□ 0.27
SF3A1-201ENST00000215793 ANKRD45Q5TZF3 282 aa16.74■□□□□ 0.27
SF3A1-201ENST00000215793 NUTM2FA1L443 756 aa16.74■□□□□ 0.27
SF3A1-201ENST00000215793 USP47Q96K76 1375 aa16.73■□□□□ 0.27
SF3A1-201ENST00000215793 ELL2O00472 640 aaPredicted RBP16.73■□□□□ 0.27
SF3A1-201ENST00000215793 NCBP3Q53F19 620 aaKnown RBP16.73■□□□□ 0.27
SF3A1-201ENST00000215793 SKOR2Q2VWA4 1001 aaPredicted RBP16.73■□□□□ 0.27
SF3A1-201ENST00000215793 G3V3G9 751 aa16.72■□□□□ 0.27
SF3A1-201ENST00000215793 DCAF8Q5TAQ9 597 aa16.72■□□□□ 0.27
SF3A1-201ENST00000215793 TPM3P06753 285 aa16.72■□□□□ 0.27
SF3A1-201ENST00000215793 GOLGA6L1Q8N7Z2 621 aa16.72■□□□□ 0.27
SF3A1-201ENST00000215793 BCL2L13Q9BXK5 485 aa16.72■□□□□ 0.27
SF3A1-201ENST00000215793 TEFQ10587 303 aa16.72■□□□□ 0.27
SF3A1-201ENST00000215793 RILPL2Q969X0 211 aa16.72■□□□□ 0.27
SF3A1-201ENST00000215793 LRRFIP1Q32MZ4 808 aaKnown RBP16.71■□□□□ 0.27
SF3A1-201ENST00000215793 C1orf141Q5JVX7 400 aa16.71■□□□□ 0.27
SF3A1-201ENST00000215793 H3BQV1 296 aa16.71■□□□□ 0.26
SF3A1-201ENST00000215793 IFFO2Q5TF58 517 aa16.71■□□□□ 0.26
SF3A1-201ENST00000215793 DDX49Q9Y6V7 483 aaKnown RBP16.71■□□□□ 0.26
SF3A1-201ENST00000215793 FAM184AQ8NB25 1140 aa16.7■□□□□ 0.26
SF3A1-201ENST00000215793 DDX19BQ9UMR2 479 aa16.7■□□□□ 0.26
SF3A1-201ENST00000215793 EXOC6Q8TAG9 804 aa16.69■□□□□ 0.26
SF3A1-201ENST00000215793 REC8O95072 547 aa16.69■□□□□ 0.26
SF3A1-201ENST00000215793 NEXNQ0ZGT2 675 aa16.69■□□□□ 0.26
SF3A1-201ENST00000215793 APAF1O14727 1248 aa16.69■□□□□ 0.26
SF3A1-201ENST00000215793 RUFY2Q8WXA3 655 aa16.69■□□□□ 0.26
SF3A1-201ENST00000215793 COG6Q9Y2V7 657 aa16.69■□□□□ 0.26
SF3A1-201ENST00000215793 MARCH6O60337 910 aa16.68■□□□□ 0.26
SF3A1-201ENST00000215793 CPLX2Q6PUV4 134 aaKnown RBP16.68■□□□□ 0.26
SF3A1-201ENST00000215793 API5Q9BZZ5 524 aaKnown RBP16.68■□□□□ 0.26
SF3A1-201ENST00000215793 PLIN1O60240 522 aa16.68■□□□□ 0.26
SF3A1-201ENST00000215793 DIAPH3Q9NSV4 1193 aa16.68■□□□□ 0.26
SF3A1-201ENST00000215793 CRBNQ96SW2 442 aa16.67■□□□□ 0.26
SF3A1-201ENST00000215793 PTPRGP23470 1445 aa16.67■□□□□ 0.26
SF3A1-201ENST00000215793 STAC3Q96MF2 364 aa16.67■□□□□ 0.26
SF3A1-201ENST00000215793 CREBRFQ8IUR6 639 aa16.67■□□□□ 0.26
SF3A1-201ENST00000215793 CEP89Q96ST8 783 aa16.66■□□□□ 0.26
SF3A1-201ENST00000215793 FOXD4L5Q5VV16 416 aaPredicted RBP16.66■□□□□ 0.26
SF3A1-201ENST00000215793 FOXD4L4Q8WXT5 416 aaPredicted RBP16.66■□□□□ 0.26
SF3A1-201ENST00000215793 DIAPH1O60610 1272 aaKnown RBP16.66■□□□□ 0.26
SF3A1-201ENST00000215793 GOLGA6L19H0YKK7 550 aa16.66■□□□□ 0.26
SF3A1-201ENST00000215793 ZKSCAN1P17029 563 aaPredicted RBP16.66■□□□□ 0.26
SF3A1-201ENST00000215793 AKAP17AQ02040 695 aaKnown RBP16.66■□□□□ 0.26
SF3A1-201ENST00000215793 ARID3AQ99856 593 aa16.66■□□□□ 0.26
SF3A1-201ENST00000215793 BECN2A8MW95 431 aa16.65■□□□□ 0.26
SF3A1-201ENST00000215793 A0A0U1RQG5 324 aaPredicted RBP16.64■□□□□ 0.25
SF3A1-201ENST00000215793 SYNE3Q6ZMZ3 975 aa16.64■□□□□ 0.25
SF3A1-201ENST00000215793 WIZO95785 1651 aa16.64■□□□□ 0.25
SF3A1-201ENST00000215793 TSR1Q2NL82 804 aaKnown RBP16.64■□□□□ 0.25
SF3A1-201ENST00000215793 C9orf78Q9NZ63 289 aaPredicted RBP16.64■□□□□ 0.25
SF3A1-201ENST00000215793 MINK1Q8N4C8 1332 aaPredicted RBP16.64■□□□□ 0.25
SF3A1-201ENST00000215793 DZIP1LQ8IYY4 767 aaKnown RBP16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms