RNA–Protein interactions for RNA: ENST00000054666.10

VAMP3-201, Transcript of vesicle associated membrane protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAMP3, Length 2,205 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP3-201ENST00000054666 FANCAO15360 1455 aa11.45□□□□□ -0.58
VAMP3-201ENST00000054666 C11orf95C9JLR9 678 aaPredicted RBP11.43□□□□□ -0.58
VAMP3-201ENST00000054666 DCAF11Q8TEB1 546 aa11.43□□□□□ -0.58
VAMP3-201ENST00000054666 CARD11Q9BXL7 1154 aa11.43□□□□□ -0.58
VAMP3-201ENST00000054666 ARID4BQ4LE39 1312 aaPredicted RBP11.43□□□□□ -0.58
VAMP3-201ENST00000054666 ASXL2Q76L83 1435 aa11.43□□□□□ -0.58
VAMP3-201ENST00000054666 PELP1Q8IZL8 1130 aaKnown RBP11.43□□□□□ -0.58
VAMP3-201ENST00000054666 ADGRL1O94910 1474 aa11.42□□□□□ -0.58
VAMP3-201ENST00000054666 ATP7AQ04656 1500 aa11.42□□□□□ -0.58
VAMP3-201ENST00000054666 INO80Q9ULG1 1556 aaPredicted RBP11.42□□□□□ -0.58
VAMP3-201ENST00000054666 OSCARQ8IYS5 282 aa11.42□□□□□ -0.58
VAMP3-201ENST00000054666 KDM2AQ9Y2K7 1162 aa11.42□□□□□ -0.58
VAMP3-201ENST00000054666 ATP10AO60312 1499 aa11.42□□□□□ -0.58
VAMP3-201ENST00000054666 ROCK2O75116 1388 aaKnown RBP11.41□□□□□ -0.58
VAMP3-201ENST00000054666 NPM1P06748 294 aaKnown RBP eCLIP11.41□□□□□ -0.58
VAMP3-201ENST00000054666 EIF2AK4Q9P2K8 1649 aaKnown RBP11.41□□□□□ -0.58
VAMP3-201ENST00000054666 BCORL1Q5H9F3 1711 aa11.41□□□□□ -0.58
VAMP3-201ENST00000054666 PRAG1Q86YV5 1406 aa11.4□□□□□ -0.58
VAMP3-201ENST00000054666 PLA2R1Q13018 1463 aa11.4□□□□□ -0.58
VAMP3-201ENST00000054666 TRPM1Q7Z4N2 1603 aa11.4□□□□□ -0.58
VAMP3-201ENST00000054666 PRKRIP1Q9H875 184 aaPredicted RBP11.4□□□□□ -0.58
VAMP3-201ENST00000054666 DEPDC5O75140 1603 aa11.39□□□□□ -0.59
VAMP3-201ENST00000054666 CFAP74Q9C0B2 1584 aa11.39□□□□□ -0.59
VAMP3-201ENST00000054666 A2MP01023 1474 aa11.39□□□□□ -0.59
VAMP3-201ENST00000054666 AFAP1Q8N556 730 aa11.39□□□□□ -0.59
VAMP3-201ENST00000054666 POLR3GLQ9BT43 218 aa11.39□□□□□ -0.59
VAMP3-201ENST00000054666 SCAPERQ9BY12 1400 aa11.38□□□□□ -0.59
VAMP3-201ENST00000054666 KANK1Q14678 1352 aa11.38□□□□□ -0.59
VAMP3-201ENST00000054666 MYT1LQ9UL68 1186 aa11.38□□□□□ -0.59
VAMP3-201ENST00000054666 SUPT16HQ9Y5B9 1047 aaKnown RBP11.38□□□□□ -0.59
VAMP3-201ENST00000054666 LAMC1P11047 1609 aa11.37□□□□□ -0.59
VAMP3-201ENST00000054666 RGL3Q3MIN7 710 aa11.37□□□□□ -0.59
VAMP3-201ENST00000054666 E9PCH4 1651 aa11.37□□□□□ -0.59
VAMP3-201ENST00000054666 TET3O43151 1660 aa11.37□□□□□ -0.59
VAMP3-201ENST00000054666 TRPM2O94759 1503 aa11.36□□□□□ -0.59
VAMP3-201ENST00000054666 HNRNPUQ00839 825 aaKnown RBP eCLIP11.36□□□□□ -0.59
VAMP3-201ENST00000054666 SPHKAPQ2M3C7 1700 aa11.36□□□□□ -0.59
VAMP3-201ENST00000054666 NEFLP07196 543 aa11.36□□□□□ -0.59
VAMP3-201ENST00000054666 ZNF518AQ6AHZ1 1483 aa11.35□□□□□ -0.59
VAMP3-201ENST00000054666 MRS2Q9HD23 443 aa11.35□□□□□ -0.59
VAMP3-201ENST00000054666 PRDM15P57071 1507 aaPredicted RBP11.34□□□□□ -0.59
VAMP3-201ENST00000054666 GPRASP1Q5JY77 1395 aa11.34□□□□□ -0.59
VAMP3-201ENST00000054666 ST20-MTHFSA0A0A6YYL1 179 aa11.34□□□□□ -0.59
VAMP3-201ENST00000054666 CEP152O94986 1710 aa11.34□□□□□ -0.59
VAMP3-201ENST00000054666 DHX29Q7Z478 1369 aaKnown RBP11.33□□□□□ -0.6
VAMP3-201ENST00000054666 VWDEQ8N2E2 1590 aa11.33□□□□□ -0.6
VAMP3-201ENST00000054666 RNF17Q9BXT8 1623 aaKnown RBP11.32□□□□□ -0.6
VAMP3-201ENST00000054666 CD109Q6YHK3 1445 aa11.32□□□□□ -0.6
VAMP3-201ENST00000054666 KIF3BO15066 747 aa11.32□□□□□ -0.6
VAMP3-201ENST00000054666 KIDINS220Q9ULH0 1771 aa11.31□□□□□ -0.6
VAMP3-201ENST00000054666 PTPRTO14522 1441 aa11.31□□□□□ -0.6
VAMP3-201ENST00000054666 CLTCL1P53675 1640 aa11.3□□□□□ -0.6
VAMP3-201ENST00000054666 POGZQ7Z3K3 1410 aa11.3□□□□□ -0.6
VAMP3-201ENST00000054666 FAM9BQ8IZU0 186 aa11.3□□□□□ -0.6
VAMP3-201ENST00000054666 MROH1Q8NDA8 1641 aa11.3□□□□□ -0.6
VAMP3-201ENST00000054666 MADDQ8WXG6 1647 aa11.29□□□□□ -0.6
VAMP3-201ENST00000054666 COL17A1Q9UMD9 1497 aaPredicted RBP11.29□□□□□ -0.6
VAMP3-201ENST00000054666 HECW2Q9P2P5 1572 aa11.29□□□□□ -0.6
VAMP3-201ENST00000054666 STAC3Q96MF2 364 aa11.29□□□□□ -0.6
VAMP3-201ENST00000054666 KTN1Q86UP2 1357 aaKnown RBP11.29□□□□□ -0.6
VAMP3-201ENST00000054666 FKBP8Q14318 412 aa11.28□□□□□ -0.6
VAMP3-201ENST00000054666 CCDC184Q52MB2 194 aa11.28□□□□□ -0.6
VAMP3-201ENST00000054666 EFCAB6Q5THR3 1501 aa11.28□□□□□ -0.6
VAMP3-201ENST00000054666 NEURL4Q96JN8 1562 aa11.28□□□□□ -0.6
VAMP3-201ENST00000054666 NBPF1Q3BBV0 1214 aa11.28□□□□□ -0.6
VAMP3-201ENST00000054666 NEO1Q92859 1461 aa11.26□□□□□ -0.61
VAMP3-201ENST00000054666 MLH3Q9UHC1 1453 aa11.26□□□□□ -0.61
VAMP3-201ENST00000054666 CNGB1Q14028 1251 aaPredicted RBP11.26□□□□□ -0.61
VAMP3-201ENST00000054666 ZBED9Q6R2W3 1325 aa11.26□□□□□ -0.61
VAMP3-201ENST00000054666 LMTK2Q8IWU2 1503 aa11.26□□□□□ -0.61
VAMP3-201ENST00000054666 KIF1BO60333 1816 aa11.25□□□□□ -0.61
VAMP3-201ENST00000054666 PPRC1Q5VV67 1664 aaKnown RBP11.25□□□□□ -0.61
VAMP3-201ENST00000054666 TMF1P82094 1093 aa11.25□□□□□ -0.61
VAMP3-201ENST00000054666 IQGAP1P46940 1657 aa11.25□□□□□ -0.61
VAMP3-201ENST00000054666 RALBP1Q15311 655 aa11.24□□□□□ -0.61
VAMP3-201ENST00000054666 KIAA1210Q9ULL0 1709 aa11.23□□□□□ -0.61
VAMP3-201ENST00000054666 MYBBP1AQ9BQG0 1328 aaKnown RBP11.23□□□□□ -0.61
VAMP3-201ENST00000054666 EIF3AQ14152 1382 aaKnown RBP11.23□□□□□ -0.61
VAMP3-201ENST00000054666 ABCA6Q8N139 1617 aa11.23□□□□□ -0.61
VAMP3-201ENST00000054666 TMC1Q8TDI8 760 aa11.23□□□□□ -0.61
VAMP3-201ENST00000054666 BCANQ96GW7 911 aa11.23□□□□□ -0.61
VAMP3-201ENST00000054666 MYOM2P54296 1465 aa11.22□□□□□ -0.61
VAMP3-201ENST00000054666 SCAF11Q99590 1463 aaKnown RBP11.22□□□□□ -0.61
VAMP3-201ENST00000054666 DISP3Q9P2K9 1392 aa11.22□□□□□ -0.61
VAMP3-201ENST00000054666 FRMPD1Q5SYB0 1578 aa11.22□□□□□ -0.61
VAMP3-201ENST00000054666 TESK2Q96S53 571 aa11.22□□□□□ -0.61
VAMP3-201ENST00000054666 BRD4O60885 1362 aaPredicted RBP11.22□□□□□ -0.61
VAMP3-201ENST00000054666 MAP3K4Q9Y6R4 1608 aa11.21□□□□□ -0.61
VAMP3-201ENST00000054666 UGGT1Q9NYU2 1555 aa11.21□□□□□ -0.62
VAMP3-201ENST00000054666 CDCA8Q53HL2 280 aa11.19□□□□□ -0.62
VAMP3-201ENST00000054666 IFT172Q9UG01 1749 aa11.19□□□□□ -0.62
VAMP3-201ENST00000054666 MROH2AA6NES4 1674 aa11.19□□□□□ -0.62
VAMP3-201ENST00000054666 WASHC2CQ9Y4E1 1318 aa11.19□□□□□ -0.62
VAMP3-201ENST00000054666 ADGRB3O60242 1522 aa11.19□□□□□ -0.62
VAMP3-201ENST00000054666 PARD3Q8TEW0 1356 aa11.19□□□□□ -0.62
VAMP3-201ENST00000054666 GGT6Q6P531 493 aa11.18□□□□□ -0.62
VAMP3-201ENST00000054666 DIP2CQ9Y2E4 1556 aa11.18□□□□□ -0.62
VAMP3-201ENST00000054666 ABCC3O15438 1527 aa11.18□□□□□ -0.62
VAMP3-201ENST00000054666 NPATQ14207 1427 aa11.18□□□□□ -0.62
VAMP3-201ENST00000054666 NLRP13Q86W25 1043 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 118.8 ms