RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 LONP2Q86WA8 852 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 OTUD7AQ8TE49 926 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-220ENST00000641603 FUCA2Q9BTY2 467 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 AZI2Q9H6S1 392 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 PSMC3IPQ9P2W1 217 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-220ENST00000641603 BIN2Q9UBW5 565 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-220ENST00000641603 IPO11Q9UI26 975 aaKnown RBP4.98□□□□□ -1.61
SCN1A-220ENST00000641603 PHF2O75151 1096 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 OLR1P78380 273 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 CALCRLQ16602 461 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 AASDHQ4L235 1098 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-220ENST00000641603 ZMYM1Q5SVZ6 1142 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 APOA5Q6Q788 366 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP4.98□□□□□ -1.61
SCN1A-220ENST00000641603 AENQ8WTP8 325 aaKnown RBP4.98□□□□□ -1.61
SCN1A-220ENST00000641603 CYTH2Q99418 400 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 PLEKHA4Q9H4M7 779 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 CHPF2Q9P2E5 772 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 ARPP21Q9UBL0 812 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-220ENST00000641603 PA2G4Q9UQ80 394 aaKnown RBP4.98□□□□□ -1.61
SCN1A-220ENST00000641603 P4HA2O15460 535 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 LCA5LO95447 670 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 CENPCQ03188 943 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 SLC34A1Q06495 639 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 LETM2Q2VYF4 491 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 TTC27Q6P3X3 843 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 OLFML1Q6UWY5 402 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 SIX6OS1Q8N1H7 587 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 PDPRQ8NCN5 879 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 FAR2Q96K12 515 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 MRPS26Q9BYN8 205 aaKnown RBP4.98□□□□□ -1.61
SCN1A-220ENST00000641603 CD248Q9HCU0 757 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 STAM2O75886 525 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 APOA4P06727 396 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 MYBL2P10244 700 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 CACNA2D1P54289 1103 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 HSPA2P54652 639 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 TBC1D9BQ66K14 1250 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 MARK2Q7KZI7 788 aaKnown RBP4.98□□□□□ -1.61
SCN1A-220ENST00000641603 SYMPKQ92797 1274 aaKnown RBP4.98□□□□□ -1.61
SCN1A-220ENST00000641603 PSMB7Q99436 277 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 STX18Q9P2W9 335 aaKnown RBP4.98□□□□□ -1.61
SCN1A-220ENST00000641603 DCDC2Q9UHG0 476 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 CAB39Q9Y376 341 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-220ENST00000641603 ABCA8O94911 1581 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 ADGRF5Q8IZF2 1346 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 MAP3K13O43283 966 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 MFAP3P55082 362 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 XRCC4Q13426 336 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 UBE3CQ15386 1083 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 CDAN1Q8IWY9 1227 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 REXO1Q8N1G1 1221 aaKnown RBP4.98□□□□□ -1.61
SCN1A-220ENST00000641603 SCAIQ8N9R8 606 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 DLG3Q92796 817 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 CNKSR1Q969H4 720 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 DSEQ9UL01 958 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 BUB1O43683 1085 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 CIAO1O76071 339 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 FGGP02679 453 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 GOLGA8FQ08AF8 430 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 GOLGA8DPQ0D2H9 430 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 PIK3AP1Q6ZUJ8 805 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 IFNL2Q8IZJ0 200 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 DRAXINQ8NBI3 349 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-220ENST00000641603 BEGAINQ9BUH8 593 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 METTL22Q9BUU2 404 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-220ENST00000641603 MRPL46Q9H2W6 279 aaKnown RBP4.97□□□□□ -1.61
SCN1A-220ENST00000641603 PABPC3Q9H361 631 aaKnown RBP4.97□□□□□ -1.61
SCN1A-220ENST00000641603 CYP39A1Q9NYL5 469 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 DENND2AQ9ULE3 1009 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 TAC1P20366 129 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 ABCE1P61221 599 aaKnown RBP4.97□□□□□ -1.61
SCN1A-220ENST00000641603 TRIM74Q86UV6 250 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 TRIM73Q86UV7 250 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 MAML1Q92585 1016 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 LRRC2Q9BYS8 371 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 RHBDL2Q9NX52 303 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 C2CD2Q9Y426 696 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 PDLIM1O00151 329 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 SLC1A1P43005 524 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 YWHAGP61981 247 aaKnown RBP eCLIP4.97□□□□□ -1.61
SCN1A-220ENST00000641603 FCHO2Q0JRZ9 810 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 USP38Q8NB14 1042 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 LARP4BQ92615 738 aaKnown RBP4.97□□□□□ -1.61
SCN1A-220ENST00000641603 DHX38Q92620 1227 aaKnown RBP4.97□□□□□ -1.61
SCN1A-220ENST00000641603 CCT7Q99832 543 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 ADD3Q9UEY8 706 aaKnown RBP4.97□□□□□ -1.61
SCN1A-220ENST00000641603 TM9SF1O15321 606 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 PRPF3O43395 683 aaKnown RBP4.97□□□□□ -1.61
SCN1A-220ENST00000641603 CHEK2O96017 543 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 GSNP06396 782 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 ATP1A3P13637 1013 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 EVA1CP58658 441 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 TMPRSS15P98073 1019 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 LUZP2Q86TE4 346 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 ZNF654Q8IZM8 581 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 TC2NQ8N9U0 490 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 ASCC2Q9H1I8 757 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-220ENST00000641603 GOLGA8RI6L899 631 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 GPAA1O43292 621 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms