RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 SCLT1Q96NL6 688 aa13.07□□□□□ -0.32
CLN3-257ENST00000637110 MAP7D2Q96T17 732 aa13.07□□□□□ -0.32
CLN3-257ENST00000637110 C11orf84Q9BUA3 381 aaPredicted RBP13.07□□□□□ -0.32
CLN3-257ENST00000637110 AGO3Q9H9G7 860 aaKnown RBP13.07□□□□□ -0.32
CLN3-257ENST00000637110 AKT3Q9Y243 479 aa13.07□□□□□ -0.32
CLN3-257ENST00000637110 RWDD3Q9Y3V2 267 aa13.07□□□□□ -0.32
CLN3-257ENST00000637110 ATG2AQ2TAZ0 1938 aa13.07□□□□□ -0.32
CLN3-257ENST00000637110 IGSF9BQ9UPX0 1349 aa13.07□□□□□ -0.32
CLN3-257ENST00000637110 FAM205CA6NFA0 338 aa13.06□□□□□ -0.32
CLN3-257ENST00000637110 DDX11L8A8MPP1 907 aa13.06□□□□□ -0.32
CLN3-257ENST00000637110 BTBD18B2RXH4 712 aa13.06□□□□□ -0.32
CLN3-257ENST00000637110 PROB1E7EW31 1015 aa13.06□□□□□ -0.32
CLN3-257ENST00000637110 ENPP3O14638 875 aa13.06□□□□□ -0.32
CLN3-257ENST00000637110 C22orf31O95567 290 aa13.06□□□□□ -0.32
CLN3-257ENST00000637110 MMP1P03956 469 aa13.06□□□□□ -0.32
CLN3-257ENST00000637110 RB1P06400 928 aa13.06□□□□□ -0.32
CLN3-257ENST00000637110 ATP2B1P20020 1258 aa13.06□□□□□ -0.32
CLN3-257ENST00000637110 SIGLEC14Q08ET2 396 aa13.06□□□□□ -0.32
CLN3-257ENST00000637110 TBC1D8BQ0IIM8 1120 aa13.06□□□□□ -0.32
CLN3-257ENST00000637110 HYAL1Q12794 435 aa13.06□□□□□ -0.32
CLN3-257ENST00000637110 GNL2Q13823 731 aaKnown RBP13.06□□□□□ -0.32
CLN3-257ENST00000637110 UGCGQ16739 394 aa13.06□□□□□ -0.32
CLN3-257ENST00000637110 TMEM266Q2M3C6 531 aa13.06□□□□□ -0.32
CLN3-257ENST00000637110 MTERF2Q49AM1 385 aa13.06□□□□□ -0.32
CLN3-257ENST00000637110 EARS2Q5JPH6 523 aaKnown RBP13.06□□□□□ -0.32
CLN3-257ENST00000637110 ODR4Q5SWX8 454 aa13.06□□□□□ -0.32
CLN3-257ENST00000637110 NCAPH2Q6IBW4 605 aa13.06□□□□□ -0.32
CLN3-257ENST00000637110 PPP4R3AQ6IN85 833 aa13.06□□□□□ -0.32
CLN3-257ENST00000637110 KIAA0319LQ8IZA0 1049 aa13.06□□□□□ -0.32
CLN3-257ENST00000637110 ETNPPLQ8TBG4 499 aa13.06□□□□□ -0.32
CLN3-257ENST00000637110 PPP2R3CQ969Q6 453 aa13.06□□□□□ -0.32
CLN3-257ENST00000637110 C8orf76Q96K31 380 aa13.06□□□□□ -0.32
CLN3-257ENST00000637110 FAM20AQ96MK3 541 aa13.06□□□□□ -0.32
CLN3-257ENST00000637110 MBOAT7Q96N66 472 aa13.06□□□□□ -0.32
CLN3-257ENST00000637110 FTHL17Q9BXU8 183 aa13.06□□□□□ -0.32
CLN3-257ENST00000637110 SH2B1Q9NRF2 756 aaPredicted RBP13.06□□□□□ -0.32
CLN3-257ENST00000637110 PLXNA3P51805 1871 aa13.06□□□□□ -0.32
CLN3-257ENST00000637110 EVPLQ92817 2033 aa13.05□□□□□ -0.32
CLN3-257ENST00000637110 ZBTB42B2RXF5 422 aa13.05□□□□□ -0.32
CLN3-257ENST00000637110 ZNF862O60290 1169 aa13.05□□□□□ -0.32
CLN3-257ENST00000637110 RPS6KA5O75582 802 aa13.05□□□□□ -0.32
CLN3-257ENST00000637110 VTNP04004 478 aa13.05□□□□□ -0.32
CLN3-257ENST00000637110 CTNNB1P35222 781 aa13.05□□□□□ -0.32
CLN3-257ENST00000637110 NDUFV1P49821 464 aa13.05□□□□□ -0.32
CLN3-257ENST00000637110 CLCN3P51790 818 aa13.05□□□□□ -0.32
CLN3-257ENST00000637110 PSMC5P62195 406 aa13.05□□□□□ -0.32
CLN3-257ENST00000637110 DLX2Q07687 328 aaPredicted RBP13.05□□□□□ -0.32
CLN3-257ENST00000637110 ST3GAL1Q11201 340 aa13.05□□□□□ -0.32
CLN3-257ENST00000637110 MKRN4PQ13434 485 aaPredicted RBP13.05□□□□□ -0.32
CLN3-257ENST00000637110 RABEP1Q15276 862 aa13.05□□□□□ -0.32
CLN3-257ENST00000637110 KIZQ2M2Z5 673 aa13.05□□□□□ -0.32
CLN3-257ENST00000637110 XKR3Q5GH77 459 aa13.05□□□□□ -0.32
CLN3-257ENST00000637110 POTEDQ86YR6 584 aa13.05□□□□□ -0.32
CLN3-257ENST00000637110 LRRC71Q8N4P6 559 aa13.05□□□□□ -0.32
CLN3-257ENST00000637110 OSMRQ99650 979 aa13.05□□□□□ -0.32
CLN3-257ENST00000637110 LLPHQ9BRT6 129 aaKnown RBP13.05□□□□□ -0.32
CLN3-257ENST00000637110 LRFN2Q9ULH4 789 aa13.05□□□□□ -0.32
CLN3-257ENST00000637110 PADI3Q9ULW8 664 aa13.05□□□□□ -0.32
CLN3-257ENST00000637110 SQORQ9Y6N5 450 aa13.05□□□□□ -0.32
CLN3-257ENST00000637110 C5orf67F2Z3F1 127 aa13.04□□□□□ -0.32
CLN3-257ENST00000637110 EML1O00423 815 aa13.04□□□□□ -0.32
CLN3-257ENST00000637110 TBX3O15119 743 aa13.04□□□□□ -0.32
CLN3-257ENST00000637110 GPR182O15218 404 aa13.04□□□□□ -0.32
CLN3-257ENST00000637110 DKC1O60832 514 aaKnown RBP eCLIP13.04□□□□□ -0.32
CLN3-257ENST00000637110 TBX10O75333 385 aa13.04□□□□□ -0.32
CLN3-257ENST00000637110 AVPR2P30518 371 aa13.04□□□□□ -0.32
CLN3-257ENST00000637110 ID4P47928 161 aa13.04□□□□□ -0.32
CLN3-257ENST00000637110 RBM25P49756 843 aaKnown RBP13.04□□□□□ -0.32
CLN3-257ENST00000637110 CRYBB1P53674 252 aaPredicted RBP13.04□□□□□ -0.32
CLN3-257ENST00000637110 HMGN5P82970 282 aaKnown RBP13.04□□□□□ -0.32
CLN3-257ENST00000637110 SLFN12Q8IYM2 578 aa13.04□□□□□ -0.32
CLN3-257ENST00000637110 FIBCD1Q8N539 461 aa13.04□□□□□ -0.32
CLN3-257ENST00000637110 ZNF668Q96K58 619 aaPredicted RBP13.04□□□□□ -0.32
CLN3-257ENST00000637110 KIF2CQ99661 725 aa13.04□□□□□ -0.32
CLN3-257ENST00000637110 SH2D3AQ9BRG2 576 aa13.04□□□□□ -0.32
CLN3-257ENST00000637110 IGFLR1Q9H665 355 aa13.04□□□□□ -0.32
CLN3-257ENST00000637110 CDHR5Q9HBB8 845 aa13.04□□□□□ -0.32
CLN3-257ENST00000637110 NOC2LQ9Y3T9 749 aaKnown RBP13.04□□□□□ -0.32
CLN3-257ENST00000637110 MYO15AQ9UKN7 3530 aa13.04□□□□□ -0.32
CLN3-257ENST00000637110 KDM3AQ9Y4C1 1321 aa13.04□□□□□ -0.32
CLN3-257ENST00000637110 DENND3A2RUS2 1198 aa13.03□□□□□ -0.32
CLN3-257ENST00000637110 TMEM150BA6NC51 233 aa13.03□□□□□ -0.32
CLN3-257ENST00000637110 LOC730098B7Z3J9 87 aa13.03□□□□□ -0.32
CLN3-257ENST00000637110 H0Y858 1186 aa13.03□□□□□ -0.32
CLN3-257ENST00000637110 EYA4O95677 639 aa13.03□□□□□ -0.32
CLN3-257ENST00000637110 STAG3L1P0CL83 205 aa13.03□□□□□ -0.32
CLN3-257ENST00000637110 QARSP47897 775 aaKnown RBP13.03□□□□□ -0.32
CLN3-257ENST00000637110 DNM2P50570 870 aa13.03□□□□□ -0.32
CLN3-257ENST00000637110 VCPP55072 806 aaKnown RBP13.03□□□□□ -0.32
CLN3-257ENST00000637110 NLRP11P59045 1033 aaKnown RBP13.03□□□□□ -0.32
CLN3-257ENST00000637110 PPP2R5CQ13362 524 aa13.03□□□□□ -0.32
CLN3-257ENST00000637110 CALCRLQ16602 461 aa13.03□□□□□ -0.32
CLN3-257ENST00000637110 NLRP7Q8WX94 980 aa13.03□□□□□ -0.32
CLN3-257ENST00000637110 ALG13Q9NP73 1137 aaKnown RBP13.03□□□□□ -0.32
CLN3-257ENST00000637110 KCNMB3Q9NPA1 279 aa13.03□□□□□ -0.32
CLN3-257ENST00000637110 TLR9Q9NR96 1032 aa13.03□□□□□ -0.32
CLN3-257ENST00000637110 VAV3Q9UKW4 847 aa13.03□□□□□ -0.32
CLN3-257ENST00000637110 ST3GAL5Q9UNP4 418 aa13.03□□□□□ -0.32
CLN3-257ENST00000637110 LOXHD1Q8IVV2 1947 aa13.02□□□□□ -0.32
CLN3-257ENST00000637110 PRR23AA6NEV1 266 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms