RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 SLC27A2O14975 620 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 B3GALNT1O75752 331 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 CST3P01034 146 aaPredicted RBP3.41□□□□□ -1.86
VIM-210ENST00000637053 MMEP08473 750 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 KRT13P13646 458 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 HSD3B1P14060 373 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 ATP6V1B1P15313 513 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 RPS2P15880 293 aaKnown RBP3.41□□□□□ -1.86
VIM-210ENST00000637053 CPEP16870 476 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 VCAM1P19320 739 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 VIPR1P32241 457 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 CD86P42081 329 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 LRRC74AQ0VAA2 488 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 PABPC4Q13310 644 aaKnown RBP eCLIP3.41□□□□□ -1.86
VIM-210ENST00000637053 PSMD6Q15008 389 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 SNX17Q15036 470 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 SHROOM1Q2M3G4 852 aaPredicted RBP3.41□□□□□ -1.86
VIM-210ENST00000637053 TNNI3KQ59H18 835 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 RRP12Q5JTH9 1297 aaKnown RBP3.41□□□□□ -1.86
VIM-210ENST00000637053 CFAP58Q5T655 872 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 GPR158Q5T848 1215 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 CYB5RLQ6IPT4 315 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 TMCO3Q6UWJ1 677 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 C4orf50Q6ZRC1 276 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 FAM196AQ6ZSG2 479 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 USP51Q70EK9 711 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 NLRP14Q86W24 1093 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 ANKRD18AQ8IVF6 992 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 SLC44A2Q8IWA5 706 aaPredicted RBP3.41□□□□□ -1.86
VIM-210ENST00000637053 CCDC144CPQ8IYA2 1237 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 TEX11Q8IYF3 940 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 C3orf58Q8NDZ4 430 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 BICD2Q8TD16 824 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 NSUN6Q8TEA1 469 aaKnown RBP3.41□□□□□ -1.86
VIM-210ENST00000637053 ANKRD49Q8WVL7 239 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 STON2Q8WXE9 905 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 USP6NLQ92738 828 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 ELMO3Q96BJ8 720 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 DDX11Q96FC9 970 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 PLPPR2Q96GM1 343 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 SHDQ96IW2 340 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 EAF1Q96JC9 268 aaPredicted RBP3.41□□□□□ -1.86
VIM-210ENST00000637053 TSGA13Q96PP4 275 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 SORCS2Q96PQ0 1159 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 MYD88Q99836 296 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 ISCA1Q9BUE6 129 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 BCO2Q9BYV7 579 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 LMAN2LQ9H0V9 348 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 ELAC1Q9H777 363 aaKnown RBP3.41□□□□□ -1.86
VIM-210ENST00000637053 DDX21Q9NR30 783 aaKnown RBP eCLIP3.41□□□□□ -1.86
VIM-210ENST00000637053 TOPORSQ9NS56 1045 aaPredicted RBP3.41□□□□□ -1.86
VIM-210ENST00000637053 ARGLU1Q9NWB6 273 aaPredicted RBP3.41□□□□□ -1.86
VIM-210ENST00000637053 ZNHIT6Q9NWK9 470 aaKnown RBP3.41□□□□□ -1.86
VIM-210ENST00000637053 TMOD4Q9NZQ9 345 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 PFDN2Q9UHV9 154 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 CTNNA3Q9UI47 895 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 GJD2Q9UKL4 321 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 TRHDEQ9UKU6 1024 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 FAM184BQ9ULE4 1060 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 ATP6V0A2Q9Y487 856 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 PCDHA11Q9Y5I1 949 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 SQORQ9Y6N5 450 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 EIF4G1Q04637 1599 aaKnown RBP3.41□□□□□ -1.86
VIM-210ENST00000637053 TNKSO95271 1327 aa3.41□□□□□ -1.86
VIM-210ENST00000637053 FRMPD2Q68DX3 1309 aaPredicted RBP3.41□□□□□ -1.86
VIM-210ENST00000637053 A0A087WZG4 1122 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 ANKRD18BA2A2Z9 1011 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 GOLGA6L3A6NEY3 463 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 AKR1B15C9JRZ8 316 aaPredicted RBP3.4□□□□□ -1.87
VIM-210ENST00000637053 INO80B-WBP1J3KQ70 363 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 EYA2O00167 538 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 MASP2O00187 686 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 AREL1O15033 823 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 SPTLC2O15270 562 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 NCAM2O15394 837 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 CLASP2O75122 1294 aaKnown RBP3.4□□□□□ -1.87
VIM-210ENST00000637053 TMEM127O75204 238 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 KIF20AO95235 890 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 APBB3O95704 486 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 CPP00450 1065 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 FSHBP01225 129 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 CYP17A1P05093 508 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 PYGLP06737 847 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 SDHBP21912 280 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 CHKAP35790 457 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 GRK6P43250 576 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 SEPHS1P49903 392 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 ALDH5A1P51649 535 aaPredicted RBP3.4□□□□□ -1.87
VIM-210ENST00000637053 CDR1P51861 262 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 LIMK1P53667 647 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 AK2P54819 239 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 ADCY1Q08828 1119 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 COL9A2Q14055 689 aaPredicted RBP3.4□□□□□ -1.87
VIM-210ENST00000637053 SEPT6Q14141 434 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 EIF4A2Q14240 407 aaKnown RBP3.4□□□□□ -1.87
VIM-210ENST00000637053 PPP2R5DQ14738 602 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 PDCD2Q16342 344 aaPredicted RBP3.4□□□□□ -1.87
VIM-210ENST00000637053 CCNG2Q16589 344 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 RABL6Q3YEC7 729 aaPredicted RBP3.4□□□□□ -1.87
VIM-210ENST00000637053 SLC45A4Q5BKX6 768 aa3.4□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms