RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 KRT31Q15323 416 aa20.31■□□□□ 0.84
CLN3-254ENST00000637050 FAM114A1Q8IWE2 563 aa20.31■□□□□ 0.84
CLN3-254ENST00000637050 ZC3H3Q8IXZ2 948 aaKnown RBP20.31■□□□□ 0.84
CLN3-254ENST00000637050 SPIRE2Q8WWL2 714 aa20.31■□□□□ 0.84
CLN3-254ENST00000637050 SLC7A3Q8WY07 619 aa20.31■□□□□ 0.84
CLN3-254ENST00000637050 TRIB2Q92519 343 aa20.31■□□□□ 0.84
CLN3-254ENST00000637050 NTPCRQ9BSD7 190 aaKnown RBP20.31■□□□□ 0.84
CLN3-254ENST00000637050 C16orf70Q9BSU1 422 aa20.31■□□□□ 0.84
CLN3-254ENST00000637050 INTS13Q9NVM9 706 aa20.31■□□□□ 0.84
CLN3-254ENST00000637050 FAM184BQ9ULE4 1060 aa20.31■□□□□ 0.84
CLN3-254ENST00000637050 Q9Y3F1 56 aa20.31■□□□□ 0.84
CLN3-254ENST00000637050 A0A1B0GTH6 734 aa20.3■□□□□ 0.84
CLN3-254ENST00000637050 A6NJR5 290 aa20.3■□□□□ 0.84
CLN3-254ENST00000637050 K7ENM7 598 aa20.3■□□□□ 0.84
CLN3-254ENST00000637050 MAFO75444 373 aaPredicted RBP20.3■□□□□ 0.84
CLN3-254ENST00000637050 ANKRD20A12PQ8NF67 263 aa20.3■□□□□ 0.84
CLN3-254ENST00000637050 BSNDQ8WZ55 320 aa20.3■□□□□ 0.84
CLN3-254ENST00000637050 POLR3FQ9H1D9 316 aaPredicted RBP20.3■□□□□ 0.84
CLN3-254ENST00000637050 TYW1Q9NV66 732 aaKnown RBP20.3■□□□□ 0.84
CLN3-254ENST00000637050 ZMYM2Q9UBW7 1377 aa20.3■□□□□ 0.84
CLN3-254ENST00000637050 CASP8AP2Q9UKL3 1982 aa20.3■□□□□ 0.84
CLN3-254ENST00000637050 DYNC1LI2O43237 492 aaPredicted RBP20.29■□□□□ 0.84
CLN3-254ENST00000637050 TGFB1I1O43294 461 aa20.29■□□□□ 0.84
CLN3-254ENST00000637050 NPTX2P47972 431 aa20.29■□□□□ 0.84
CLN3-254ENST00000637050 GTF2BQ00403 316 aa20.29■□□□□ 0.84
CLN3-254ENST00000637050 DMP1Q13316 513 aaPredicted RBP20.29■□□□□ 0.84
CLN3-254ENST00000637050 DGKDQ16760 1214 aa20.29■□□□□ 0.84
CLN3-254ENST00000637050 MFSD14CQ5VZR4 134 aa20.29■□□□□ 0.84
CLN3-254ENST00000637050 HAUS6Q7Z4H7 955 aa20.29■□□□□ 0.84
CLN3-254ENST00000637050 TLK2Q86UE8 772 aa20.29■□□□□ 0.84
CLN3-254ENST00000637050 EXOC8Q8IYI6 725 aa20.29■□□□□ 0.84
CLN3-254ENST00000637050 EEF2KMTQ96G04 330 aa20.29■□□□□ 0.84
CLN3-254ENST00000637050 RNPEPQ9H4A4 650 aa20.29■□□□□ 0.84
CLN3-254ENST00000637050 MAGEC2Q9UBF1 373 aaPredicted RBP20.29■□□□□ 0.84
CLN3-254ENST00000637050 SLC16A4O15374 487 aa20.29■□□□□ 0.84
CLN3-254ENST00000637050 TPM3P06753 285 aa20.29■□□□□ 0.84
CLN3-254ENST00000637050 CYBAP13498 195 aa20.29■□□□□ 0.84
CLN3-254ENST00000637050 ARL2P36404 184 aa20.29■□□□□ 0.84
CLN3-254ENST00000637050 SMTNP53814 917 aa20.29■□□□□ 0.84
CLN3-254ENST00000637050 NR1I3Q14994 352 aa20.29■□□□□ 0.84
CLN3-254ENST00000637050 SPC24Q8NBT2 197 aa20.29■□□□□ 0.84
CLN3-254ENST00000637050 TRPV1Q8NER1 839 aa20.29■□□□□ 0.84
CLN3-254ENST00000637050 UBE2Q2Q8WVN8 375 aa20.29■□□□□ 0.84
CLN3-254ENST00000637050 CNOT6LQ96LI5 555 aaKnown RBP20.29■□□□□ 0.84
CLN3-254ENST00000637050 CEP63Q96MT8 703 aa20.29■□□□□ 0.84
CLN3-254ENST00000637050 TRPC6Q9Y210 931 aa20.29■□□□□ 0.84
CLN3-254ENST00000637050 IGKV6-21A0A0C4DH24 114 aa20.28■□□□□ 0.84
CLN3-254ENST00000637050 GPR25O00155 361 aa20.28■□□□□ 0.84
CLN3-254ENST00000637050 CALUO43852 315 aaPredicted RBP20.28■□□□□ 0.84
CLN3-254ENST00000637050 GAS2O43903 313 aaKnown RBP20.28■□□□□ 0.84
CLN3-254ENST00000637050 ZNF286BP0CG31 522 aa20.28■□□□□ 0.84
CLN3-254ENST00000637050 AKR1A1P14550 325 aa20.28■□□□□ 0.84
CLN3-254ENST00000637050 COPB1P53618 953 aaKnown RBP20.28■□□□□ 0.84
CLN3-254ENST00000637050 TBC1D8BQ0IIM8 1120 aa20.28■□□□□ 0.84
CLN3-254ENST00000637050 KSR1Q8IVT5 923 aa20.28■□□□□ 0.84
CLN3-254ENST00000637050 DRC7Q8IY82 874 aa20.28■□□□□ 0.84
CLN3-254ENST00000637050 TMEM161BQ8NDZ6 487 aa20.28■□□□□ 0.84
CLN3-254ENST00000637050 KMT5AQ9NQR1 393 aa20.28■□□□□ 0.84
CLN3-254ENST00000637050 KCNG1Q9UIX4 513 aa20.28■□□□□ 0.84
CLN3-254ENST00000637050 ZNF215Q9UL58 517 aaPredicted RBP20.28■□□□□ 0.84
CLN3-254ENST00000637050 CCDC169A6NNP5 214 aa20.27■□□□□ 0.84
CLN3-254ENST00000637050 H3BRB1 525 aa20.27■□□□□ 0.84
CLN3-254ENST00000637050 NFIL3Q16649 462 aa20.27■□□□□ 0.84
CLN3-254ENST00000637050 FILIP1LQ4L180 1135 aa20.27■□□□□ 0.84
CLN3-254ENST00000637050 ZNF484Q5JVG2 852 aa20.27■□□□□ 0.84
CLN3-254ENST00000637050 FILIP1Q7Z7B0 1213 aa20.27■□□□□ 0.84
CLN3-254ENST00000637050 CD99L2Q8TCZ2 262 aa20.27■□□□□ 0.84
CLN3-254ENST00000637050 TMEM143Q96AN5 459 aa20.27■□□□□ 0.84
CLN3-254ENST00000637050 LENG1Q96BZ8 264 aaPredicted RBP20.27■□□□□ 0.84
CLN3-254ENST00000637050 HVCN1Q96D96 273 aa20.27■□□□□ 0.84
CLN3-254ENST00000637050 IFT74Q96LB3 600 aa20.27■□□□□ 0.84
CLN3-254ENST00000637050 TUT1Q9H6E5 874 aaKnown RBP20.27■□□□□ 0.84
CLN3-254ENST00000637050 RTN4Q9NQC3 1192 aaKnown RBP20.27■□□□□ 0.84
CLN3-254ENST00000637050 SAGE1Q9NXZ1 904 aa20.27■□□□□ 0.84
CLN3-254ENST00000637050 TAB2Q9NYJ8 693 aa20.27■□□□□ 0.84
CLN3-254ENST00000637050 SRRDQ9UH36 339 aa20.27■□□□□ 0.84
CLN3-254ENST00000637050 HOXD10P28358 340 aa20.26■□□□□ 0.83
CLN3-254ENST00000637050 KCNN1Q92952 543 aa20.26■□□□□ 0.83
CLN3-254ENST00000637050 ACCSQ96QU6 501 aa20.26■□□□□ 0.83
CLN3-254ENST00000637050 JPH2Q9BR39 696 aaPredicted RBP20.26■□□□□ 0.83
CLN3-254ENST00000637050 GBP3Q9H0R5 595 aa20.26■□□□□ 0.83
CLN3-254ENST00000637050 TMEM206Q9H813 350 aa20.26■□□□□ 0.83
CLN3-254ENST00000637050 GOLGA6L6A8MZA4 724 aa20.26■□□□□ 0.83
CLN3-254ENST00000637050 GNRH1P01148 92 aa20.26■□□□□ 0.83
CLN3-254ENST00000637050 PTMAP06454 111 aaKnown RBP20.26■□□□□ 0.83
CLN3-254ENST00000637050 INSRRP14616 1297 aa20.26■□□□□ 0.83
CLN3-254ENST00000637050 GLRA2P23416 452 aa20.26■□□□□ 0.83
CLN3-254ENST00000637050 NR2F2P24468 414 aa20.26■□□□□ 0.83
CLN3-254ENST00000637050 ADAM9Q13443 819 aa20.26■□□□□ 0.83
CLN3-254ENST00000637050 CREBRFQ8IUR6 639 aa20.26■□□□□ 0.83
CLN3-254ENST00000637050 VSTM4Q8IW00 320 aa20.26■□□□□ 0.83
CLN3-254ENST00000637050 ASAP3Q8TDY4 903 aa20.26■□□□□ 0.83
CLN3-254ENST00000637050 TUBGCP2Q9BSJ2 902 aa20.26■□□□□ 0.83
CLN3-254ENST00000637050 AP5M1Q9H0R1 490 aa20.26■□□□□ 0.83
CLN3-254ENST00000637050 VPS16Q9H269 839 aa20.26■□□□□ 0.83
CLN3-254ENST00000637050 ARHGAP28Q9P2N2 729 aa20.26■□□□□ 0.83
CLN3-254ENST00000637050 COL1A2P08123 1366 aa20.25■□□□□ 0.83
CLN3-254ENST00000637050 H0YCG3 227 aa20.25■□□□□ 0.83
CLN3-254ENST00000637050 N4BP3O15049 544 aa20.25■□□□□ 0.83
CLN3-254ENST00000637050 CETN3O15182 167 aa20.25■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms