RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 FAF1Q9UNN5 650 aaPredicted RBP7.37□□□□□ -1.23
SCN1A-213ENST00000636759 NFS1Q9Y697 457 aa7.37□□□□□ -1.23
SCN1A-213ENST00000636759 DUOX1Q9NRD9 1551 aa7.37□□□□□ -1.23
SCN1A-213ENST00000636759 KLF18A0A0U1RQI7 1052 aa7.37□□□□□ -1.23
SCN1A-213ENST00000636759 SPECC1L-ADORA2AF8WAN1 911 aa7.37□□□□□ -1.23
SCN1A-213ENST00000636759 RGL2O15211 777 aa7.37□□□□□ -1.23
SCN1A-213ENST00000636759 RNF113AO15541 343 aaKnown RBP7.37□□□□□ -1.23
SCN1A-213ENST00000636759 PCCAP05165 728 aaPredicted RBP7.37□□□□□ -1.23
SCN1A-213ENST00000636759 PORP16435 677 aaPredicted RBP7.37□□□□□ -1.23
SCN1A-213ENST00000636759 TRPC1P48995 793 aa7.37□□□□□ -1.23
SCN1A-213ENST00000636759 PMS2P54278 862 aa7.37□□□□□ -1.23
SCN1A-213ENST00000636759 TIMM10P62072 90 aa7.37□□□□□ -1.23
SCN1A-213ENST00000636759 PSMC1P62191 440 aaKnown RBP7.37□□□□□ -1.23
SCN1A-213ENST00000636759 GPSM2P81274 684 aa7.37□□□□□ -1.23
SCN1A-213ENST00000636759 ZBTB17Q13105 803 aa7.37□□□□□ -1.23
SCN1A-213ENST00000636759 UAP1Q16222 522 aaPredicted RBP7.37□□□□□ -1.23
SCN1A-213ENST00000636759 ASRGL1Q7L266 308 aa7.37□□□□□ -1.23
SCN1A-213ENST00000636759 TAOK1Q7L7X3 1001 aa7.37□□□□□ -1.23
SCN1A-213ENST00000636759 PTF1AQ7RTS3 328 aa7.37□□□□□ -1.23
SCN1A-213ENST00000636759 CROCCP2Q86T23 111 aa7.37□□□□□ -1.23
SCN1A-213ENST00000636759 FAM13CQ8NE31 585 aa7.37□□□□□ -1.23
SCN1A-213ENST00000636759 NDUFA13Q9P0J0 144 aa7.37□□□□□ -1.23
SCN1A-213ENST00000636759 BAZ2AQ9UIF9 1905 aaKnown RBP7.36□□□□□ -1.23
SCN1A-213ENST00000636759 GRID2IPA4D2P6 1211 aa7.36□□□□□ -1.23
SCN1A-213ENST00000636759 TMEM110-MUSTN1A8MSY1 372 aa7.36□□□□□ -1.23
SCN1A-213ENST00000636759 BOLA2-SMG1P6H3BVE0 249 aa7.36□□□□□ -1.23
SCN1A-213ENST00000636759 ATP9BO43861 1147 aa7.36□□□□□ -1.23
SCN1A-213ENST00000636759 LYNP07948 512 aa7.36□□□□□ -1.23
SCN1A-213ENST00000636759 RGS2P41220 211 aa7.36□□□□□ -1.23
SCN1A-213ENST00000636759 MAGEA1P43355 309 aa7.36□□□□□ -1.23
SCN1A-213ENST00000636759 RTP1P59025 263 aa7.36□□□□□ -1.23
SCN1A-213ENST00000636759 PAK1Q13153 545 aa7.36□□□□□ -1.23
SCN1A-213ENST00000636759 SEPT6Q14141 434 aa7.36□□□□□ -1.23
SCN1A-213ENST00000636759 CCDC153Q494R4 210 aa7.36□□□□□ -1.23
SCN1A-213ENST00000636759 TCP11X2Q5H9J9 407 aa7.36□□□□□ -1.23
SCN1A-213ENST00000636759 SYDE2Q5VT97 1194 aa7.36□□□□□ -1.23
SCN1A-213ENST00000636759 MIGA2Q7L4E1 593 aa7.36□□□□□ -1.23
SCN1A-213ENST00000636759 DNAJC10Q8IXB1 793 aa7.36□□□□□ -1.23
SCN1A-213ENST00000636759 SUPT20HQ8NEM7 779 aa7.36□□□□□ -1.23
SCN1A-213ENST00000636759 SNX27Q96L92 541 aa7.36□□□□□ -1.23
SCN1A-213ENST00000636759 CDCA7Q9BWT1 371 aaPredicted RBP7.36□□□□□ -1.23
SCN1A-213ENST00000636759 RABL2AQ9UBK7 228 aaPredicted RBP7.36□□□□□ -1.23
SCN1A-213ENST00000636759 DKK3Q9UBP4 350 aa7.36□□□□□ -1.23
SCN1A-213ENST00000636759 THSD7AQ9UPZ6 1657 aa7.36□□□□□ -1.23
SCN1A-213ENST00000636759 DDX60LQ5H9U9 1706 aaKnown RBP7.36□□□□□ -1.23
SCN1A-213ENST00000636759 COBLO75128 1261 aa7.36□□□□□ -1.23
SCN1A-213ENST00000636759 STK10O94804 968 aaKnown RBP7.36□□□□□ -1.23
SCN1A-213ENST00000636759 S100A1P23297 94 aa7.36□□□□□ -1.23
SCN1A-213ENST00000636759 VARSP26640 1264 aaKnown RBP7.36□□□□□ -1.23
SCN1A-213ENST00000636759 ADORA1P30542 326 aa7.36□□□□□ -1.23
SCN1A-213ENST00000636759 HALP42357 657 aa7.36□□□□□ -1.23
SCN1A-213ENST00000636759 CDK7P50613 346 aa7.36□□□□□ -1.23
SCN1A-213ENST00000636759 RNASELQ05823 741 aaKnown RBP7.36□□□□□ -1.23
SCN1A-213ENST00000636759 TRADDQ15628 312 aa7.36□□□□□ -1.23
SCN1A-213ENST00000636759 FAAH2Q6GMR7 532 aa7.36□□□□□ -1.23
SCN1A-213ENST00000636759 MB21D1Q8N884 522 aa7.36□□□□□ -1.23
SCN1A-213ENST00000636759 NEK9Q8TD19 979 aa7.36□□□□□ -1.23
SCN1A-213ENST00000636759 PUS7LQ9H0K6 701 aaKnown RBP7.36□□□□□ -1.23
SCN1A-213ENST00000636759 EXOC1Q9NV70 894 aa7.36□□□□□ -1.23
SCN1A-213ENST00000636759 TBCCD1Q9NVR7 557 aa7.36□□□□□ -1.23
SCN1A-213ENST00000636759 EURLQ9NYK6 297 aa7.36□□□□□ -1.23
SCN1A-213ENST00000636759 PRELID1Q9Y255 219 aa7.36□□□□□ -1.23
SCN1A-213ENST00000636759 PCDHA13Q9Y5I0 950 aa7.36□□□□□ -1.23
SCN1A-213ENST00000636759 TCP11X1B4DZS4 312 aa7.35□□□□□ -1.23
SCN1A-213ENST00000636759 EYA2O00167 538 aa7.35□□□□□ -1.23
SCN1A-213ENST00000636759 RANBP6O60518 1105 aaKnown RBP7.35□□□□□ -1.23
SCN1A-213ENST00000636759 ENTPD5O75356 428 aa7.35□□□□□ -1.23
SCN1A-213ENST00000636759 CD44P16070 742 aaKnown RBP7.35□□□□□ -1.23
SCN1A-213ENST00000636759 HOXD11P31277 338 aaPredicted RBP7.35□□□□□ -1.23
SCN1A-213ENST00000636759 IL15P40933 162 aaPredicted RBP7.35□□□□□ -1.23
SCN1A-213ENST00000636759 SERPINB8P50452 374 aa7.35□□□□□ -1.23
SCN1A-213ENST00000636759 TBL3Q12788 808 aaKnown RBP7.35□□□□□ -1.23
SCN1A-213ENST00000636759 TBC1D9BQ66K14 1250 aa7.35□□□□□ -1.23
SCN1A-213ENST00000636759 KRT40Q6A162 431 aa7.35□□□□□ -1.23
SCN1A-213ENST00000636759 DUS1LQ6P1R4 473 aaKnown RBP7.35□□□□□ -1.23
SCN1A-213ENST00000636759 WDR59Q6PJI9 974 aa7.35□□□□□ -1.23
SCN1A-213ENST00000636759 C3orf67Q6ZVT6 689 aa7.35□□□□□ -1.23
SCN1A-213ENST00000636759 KRT26Q7Z3Y9 468 aa7.35□□□□□ -1.23
SCN1A-213ENST00000636759 FITM2Q8N6M3 262 aa7.35□□□□□ -1.23
SCN1A-213ENST00000636759 ZBTB38Q8NAP3 1195 aaPredicted RBP7.35□□□□□ -1.23
SCN1A-213ENST00000636759 MGARPQ8TDB4 240 aa7.35□□□□□ -1.23
SCN1A-213ENST00000636759 SH3TC2Q8TF17 1288 aa7.35□□□□□ -1.23
SCN1A-213ENST00000636759 ATXN2LQ8WWM7 1075 aaKnown RBP7.35□□□□□ -1.23
SCN1A-213ENST00000636759 GATA6Q92908 595 aa7.35□□□□□ -1.23
SCN1A-213ENST00000636759 TLCD1Q96CP7 247 aa7.35□□□□□ -1.23
SCN1A-213ENST00000636759 ZNF594Q96JF6 807 aaPredicted RBP7.35□□□□□ -1.23
SCN1A-213ENST00000636759 ZNF512BQ96KM6 892 aaPredicted RBP7.35□□□□□ -1.23
SCN1A-213ENST00000636759 GSDMAQ96QA5 445 aa7.35□□□□□ -1.23
SCN1A-213ENST00000636759 NDEL1Q9GZM8 345 aa7.35□□□□□ -1.23
SCN1A-213ENST00000636759 ASCC2Q9H1I8 757 aaPredicted RBP7.35□□□□□ -1.23
SCN1A-213ENST00000636759 ZBTB3Q9H5J0 574 aa7.35□□□□□ -1.23
SCN1A-213ENST00000636759 CARD8Q9Y2G2 431 aa7.35□□□□□ -1.23
SCN1A-213ENST00000636759 SPATA31D3P0C874 917 aa7.35□□□□□ -1.23
SCN1A-213ENST00000636759 CCNB1P14635 433 aa7.35□□□□□ -1.23
SCN1A-213ENST00000636759 GEMIN4P57678 1058 aaKnown RBP7.35□□□□□ -1.23
SCN1A-213ENST00000636759 ERVK-9P63128 1117 aa7.35□□□□□ -1.23
SCN1A-213ENST00000636759 ZNF394Q53GI3 561 aa7.35□□□□□ -1.23
SCN1A-213ENST00000636759 SH3D19Q5HYK7 790 aa7.35□□□□□ -1.23
SCN1A-213ENST00000636759 SOGA3Q5TF21 947 aa7.35□□□□□ -1.23
SCN1A-213ENST00000636759 DENND2CQ68D51 928 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms