RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 DEFB123Q8N688 67 aa23.06■■□□□ 1.28
CLN3-240ENST00000631023 TMEM40Q8WWA1 233 aa23.06■■□□□ 1.28
CLN3-240ENST00000631023 TMEM143Q96AN5 459 aa23.06■■□□□ 1.28
CLN3-240ENST00000631023 AK8Q96MA6 479 aa23.06■■□□□ 1.28
CLN3-240ENST00000631023 GCOM2Q9BZD3 368 aaPredicted RBP23.06■■□□□ 1.28
CLN3-240ENST00000631023 ATP6V0A4Q9HBG4 840 aa23.06■■□□□ 1.28
CLN3-240ENST00000631023 ST3GAL5Q9UNP4 418 aa23.06■■□□□ 1.28
CLN3-240ENST00000631023 KIAA1024Q9UPX6 916 aa23.06■■□□□ 1.28
CLN3-240ENST00000631023 ENPP3O14638 875 aa23.06■■□□□ 1.28
CLN3-240ENST00000631023 ASAP2O43150 1006 aa23.06■■□□□ 1.28
CLN3-240ENST00000631023 TLL1O43897 1013 aa23.06■■□□□ 1.28
CLN3-240ENST00000631023 PRPF31Q8WWY3 499 aaKnown RBP23.06■■□□□ 1.28
CLN3-240ENST00000631023 INO80BQ9C086 356 aaPredicted RBP23.06■■□□□ 1.28
CLN3-240ENST00000631023 ERVK-5Q9HDB9 667 aa23.06■■□□□ 1.28
CLN3-240ENST00000631023 BMP2KQ9NSY1 1161 aaPredicted RBP23.06■■□□□ 1.28
CLN3-240ENST00000631023 COL4A3BPQ9Y5P4 624 aa23.06■■□□□ 1.28
CLN3-240ENST00000631023 CLIC4Q9Y696 253 aa23.06■■□□□ 1.28
CLN3-240ENST00000631023 LOC101059915A0A1B0GWI6 518 aaPredicted RBP23.05■■□□□ 1.28
CLN3-240ENST00000631023 ARHGEF35A5YM69 484 aa23.05■■□□□ 1.28
CLN3-240ENST00000631023 PP2D1A8MPX8 630 aa23.05■■□□□ 1.28
CLN3-240ENST00000631023 GJB5O95377 273 aa23.05■■□□□ 1.28
CLN3-240ENST00000631023 DARSP14868 501 aaKnown RBP23.05■■□□□ 1.28
CLN3-240ENST00000631023 CDC25AP30304 524 aa23.05■■□□□ 1.28
CLN3-240ENST00000631023 MXD4Q14582 209 aaPredicted RBP23.05■■□□□ 1.28
CLN3-240ENST00000631023 FAM173BQ6P4H8 233 aa23.05■■□□□ 1.28
CLN3-240ENST00000631023 ZNF668Q96K58 619 aaPredicted RBP23.05■■□□□ 1.28
CLN3-240ENST00000631023 SLC28A3Q9HAS3 691 aa23.05■■□□□ 1.28
CLN3-240ENST00000631023 DDX19AQ9NUU7 478 aaKnown RBP23.05■■□□□ 1.28
CLN3-240ENST00000631023 DNM3Q9UQ16 869 aa23.05■■□□□ 1.28
CLN3-240ENST00000631023 ECM1Q16610 540 aa23.04■■□□□ 1.28
CLN3-240ENST00000631023 FAM228AQ86W67 206 aa23.04■■□□□ 1.28
CLN3-240ENST00000631023 KCTD17Q8N5Z5 321 aa23.04■■□□□ 1.28
CLN3-240ENST00000631023 MCPH1Q8NEM0 835 aa23.04■■□□□ 1.28
CLN3-240ENST00000631023 TOP1MTQ969P6 601 aa23.04■■□□□ 1.28
CLN3-240ENST00000631023 NLRP4Q96MN2 994 aa23.04■■□□□ 1.28
CLN3-240ENST00000631023 MYH11P35749 1972 aa23.03■■□□□ 1.28
CLN3-240ENST00000631023 A0A087WZ62 844 aa23.03■■□□□ 1.28
CLN3-240ENST00000631023 RBAK-RBAKDNI3L0D1 243 aa23.03■■□□□ 1.28
CLN3-240ENST00000631023 ZSCAN22P10073 491 aaPredicted RBP23.03■■□□□ 1.28
CLN3-240ENST00000631023 LONP1P36776 959 aaKnown RBP23.03■■□□□ 1.28
CLN3-240ENST00000631023 LAMTOR4Q0VGL1 99 aa23.03■■□□□ 1.28
CLN3-240ENST00000631023 FAM117BQ6P1L5 589 aa23.03■■□□□ 1.28
CLN3-240ENST00000631023 CDK5RAP3Q96JB5 506 aa23.03■■□□□ 1.28
CLN3-240ENST00000631023 ZNF396Q96N95 335 aaPredicted RBP23.03■■□□□ 1.28
CLN3-240ENST00000631023 RAD9AQ99638 391 aa23.03■■□□□ 1.28
CLN3-240ENST00000631023 FDXACB1Q9BRP7 624 aaPredicted RBP23.03■■□□□ 1.28
CLN3-240ENST00000631023 MMTAG2Q9BU76 263 aaKnown RBP23.03■■□□□ 1.28
CLN3-240ENST00000631023 NT5C3AQ9H0P0 336 aa23.03■■□□□ 1.28
CLN3-240ENST00000631023 TSPYL2Q9H2G4 693 aaPredicted RBP23.03■■□□□ 1.28
CLN3-240ENST00000631023 SEMA6BQ9H3T3 888 aa23.03■■□□□ 1.28
CLN3-240ENST00000631023 XPNPEP1Q9NQW7 623 aa23.03■■□□□ 1.28
CLN3-240ENST00000631023 SLC26A4O43511 780 aa23.02■■□□□ 1.28
CLN3-240ENST00000631023 USO1O60763 962 aaKnown RBP23.02■■□□□ 1.28
CLN3-240ENST00000631023 SRGAP2CP0DJJ0 459 aa23.02■■□□□ 1.28
CLN3-240ENST00000631023 MYOGP15173 224 aa23.02■■□□□ 1.28
CLN3-240ENST00000631023 UBA7P41226 1012 aa23.02■■□□□ 1.28
CLN3-240ENST00000631023 CEBPZQ03701 1054 aaKnown RBP23.02■■□□□ 1.28
CLN3-240ENST00000631023 PTPAQ15257 358 aa23.02■■□□□ 1.28
CLN3-240ENST00000631023 ZRSR1Q15695 479 aaKnown RBP23.02■■□□□ 1.28
CLN3-240ENST00000631023 PADI6Q6TGC4 694 aa23.02■■□□□ 1.28
CLN3-240ENST00000631023 TMCO2Q7Z6W1 182 aaPredicted RBP23.02■■□□□ 1.28
CLN3-240ENST00000631023 KSR1Q8IVT5 923 aa23.02■■□□□ 1.28
CLN3-240ENST00000631023 NKX2-4Q9H2Z4 354 aa23.02■■□□□ 1.28
CLN3-240ENST00000631023 TMX1Q9H3N1 280 aa23.02■■□□□ 1.28
CLN3-240ENST00000631023 ZNF576Q9H609 170 aa23.02■■□□□ 1.28
CLN3-240ENST00000631023 RNF216Q9NWF9 866 aaPredicted RBP23.02■■□□□ 1.28
CLN3-240ENST00000631023 YBX2Q9Y2T7 364 aaKnown RBP23.02■■□□□ 1.28
CLN3-240ENST00000631023 INSL6Q9Y581 213 aa23.02■■□□□ 1.28
CLN3-240ENST00000631023 DENND3A2RUS2 1198 aa23.01■■□□□ 1.27
CLN3-240ENST00000631023 UPP2O95045 317 aa23.01■■□□□ 1.27
CLN3-240ENST00000631023 ZSCAN20P17040 1043 aaPredicted RBP23.01■■□□□ 1.27
CLN3-240ENST00000631023 SFPQP23246 707 aaKnown RBP eCLIP23.01■■□□□ 1.27
CLN3-240ENST00000631023 TFDP1Q14186 410 aa23.01■■□□□ 1.27
CLN3-240ENST00000631023 Q7L0L9 218 aa23.01■■□□□ 1.27
CLN3-240ENST00000631023 USP28Q96RU2 1077 aa23.01■■□□□ 1.27
CLN3-240ENST00000631023 BHMT2Q9H2M3 363 aa23.01■■□□□ 1.27
CLN3-240ENST00000631023 F13A1P00488 732 aa23.01■■□□□ 1.27
CLN3-240ENST00000631023 HYIQ5T013 277 aa23.01■■□□□ 1.27
CLN3-240ENST00000631023 FOXD4L5Q5VV16 416 aaPredicted RBP23.01■■□□□ 1.27
CLN3-240ENST00000631023 PPP2R2DQ66LE6 453 aa23.01■■□□□ 1.27
CLN3-240ENST00000631023 RTN4RL1Q86UN2 441 aaPredicted RBP23.01■■□□□ 1.27
CLN3-240ENST00000631023 FOXD4L4Q8WXT5 416 aaPredicted RBP23.01■■□□□ 1.27
CLN3-240ENST00000631023 ADAM2Q99965 735 aa23.01■■□□□ 1.27
CLN3-240ENST00000631023 C1orf112Q9NSG2 853 aa23.01■■□□□ 1.27
CLN3-240ENST00000631023 EYA4O95677 639 aa23■■□□□ 1.27
CLN3-240ENST00000631023 CA3P07451 260 aa23■■□□□ 1.27
CLN3-240ENST00000631023 STAG3L1P0CL83 205 aa23■■□□□ 1.27
CLN3-240ENST00000631023 CYP11B2P19099 503 aa23■■□□□ 1.27
CLN3-240ENST00000631023 MARCKSP29966 332 aaPredicted RBP23■■□□□ 1.27
CLN3-240ENST00000631023 ARL2P36404 184 aa23■■□□□ 1.27
CLN3-240ENST00000631023 SLC39A14Q15043 492 aa23■■□□□ 1.27
CLN3-240ENST00000631023 SRGAP1Q7Z6B7 1085 aa23■■□□□ 1.27
CLN3-240ENST00000631023 CABP7Q86V35 215 aa23■■□□□ 1.27
CLN3-240ENST00000631023 RNF149Q8NC42 400 aa23■■□□□ 1.27
CLN3-240ENST00000631023 CALML4Q96GE6 196 aa23■■□□□ 1.27
CLN3-240ENST00000631023 FAM161BQ96MY7 647 aa23■■□□□ 1.27
CLN3-240ENST00000631023 TTYH1Q9H313 450 aaPredicted RBP23■■□□□ 1.27
CLN3-240ENST00000631023 IFT122Q9HBG6 1241 aa23■■□□□ 1.27
CLN3-240ENST00000631023 RGS18Q9NS28 235 aa23■■□□□ 1.27
CLN3-240ENST00000631023 PHKA2P46019 1235 aa22.99■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms