RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 GPBP1Q86WP2 473 aa21.9■■□□□ 1.1
UPF3A-211ENST00000618700 C7orf61Q8IZ16 206 aa21.9■■□□□ 1.1
UPF3A-211ENST00000618700 FMR1NBQ8N0W7 255 aaPredicted RBP21.9■■□□□ 1.1
UPF3A-211ENST00000618700 CCDC155Q8N6L0 562 aa21.9■■□□□ 1.1
UPF3A-211ENST00000618700 MCPH1Q8NEM0 835 aa21.9■■□□□ 1.1
UPF3A-211ENST00000618700 ENGASEQ8NFI3 743 aa21.9■■□□□ 1.1
UPF3A-211ENST00000618700 DNAJB3Q8WWF6 145 aa21.9■■□□□ 1.1
UPF3A-211ENST00000618700 FAM49AQ9H0Q0 323 aaPredicted RBP21.9■■□□□ 1.1
UPF3A-211ENST00000618700 SUGCTQ9HAC7 445 aa21.9■■□□□ 1.1
UPF3A-211ENST00000618700 KBTBD4Q9NVX7 518 aa21.9■■□□□ 1.1
UPF3A-211ENST00000618700 USP25Q9UHP3 1055 aa21.9■■□□□ 1.1
UPF3A-211ENST00000618700 TRIM43BA6NCK2 446 aa21.89■■□□□ 1.09
UPF3A-211ENST00000618700 CHRM1P11229 460 aaPredicted RBP21.89■■□□□ 1.09
UPF3A-211ENST00000618700 FAM160A1Q05DH4 1040 aa21.89■■□□□ 1.09
UPF3A-211ENST00000618700 TRAF7Q6Q0C0 670 aa21.89■■□□□ 1.09
UPF3A-211ENST00000618700 TRIM43Q96BQ3 446 aaPredicted RBP21.89■■□□□ 1.09
UPF3A-211ENST00000618700 TNMDQ9H2S6 317 aa21.89■■□□□ 1.09
UPF3A-211ENST00000618700 HIPK3Q9H422 1215 aa21.89■■□□□ 1.09
UPF3A-211ENST00000618700 LMBRD1Q9NUN5 540 aa21.89■■□□□ 1.09
UPF3A-211ENST00000618700 TMEM39AQ9NV64 488 aa21.89■■□□□ 1.09
UPF3A-211ENST00000618700 TANC1Q9C0D5 1861 aa21.89■■□□□ 1.09
UPF3A-211ENST00000618700 EVI5O60447 810 aa21.88■■□□□ 1.09
UPF3A-211ENST00000618700 SLFN14P0C7P3 912 aa21.88■■□□□ 1.09
UPF3A-211ENST00000618700 CKBP12277 381 aa21.88■■□□□ 1.09
UPF3A-211ENST00000618700 LIG1P18858 919 aa21.88■■□□□ 1.09
UPF3A-211ENST00000618700 MGAT3Q09327 533 aa21.88■■□□□ 1.09
UPF3A-211ENST00000618700 MAPK7Q13164 816 aa21.88■■□□□ 1.09
UPF3A-211ENST00000618700 BFSP2Q13515 415 aa21.88■■□□□ 1.09
UPF3A-211ENST00000618700 SNW1Q13573 536 aaKnown RBP21.88■■□□□ 1.09
UPF3A-211ENST00000618700 LONRF3Q496Y0 759 aa21.88■■□□□ 1.09
UPF3A-211ENST00000618700 IER5Q5VY09 327 aa21.88■■□□□ 1.09
UPF3A-211ENST00000618700 SV2BQ7L1I2 683 aa21.88■■□□□ 1.09
UPF3A-211ENST00000618700 RSPH3Q86UC2 560 aa21.88■■□□□ 1.09
UPF3A-211ENST00000618700 NME8Q8N427 588 aa21.88■■□□□ 1.09
UPF3A-211ENST00000618700 TCP11Q8WWU5 503 aa21.88■■□□□ 1.09
UPF3A-211ENST00000618700 TMEM143Q96AN5 459 aa21.88■■□□□ 1.09
UPF3A-211ENST00000618700 MAP7D2Q96T17 732 aa21.88■■□□□ 1.09
UPF3A-211ENST00000618700 TIPINQ9BVW5 301 aa21.88■■□□□ 1.09
UPF3A-211ENST00000618700 GPRC5CQ9NQ84 441 aa21.88■■□□□ 1.09
UPF3A-211ENST00000618700 SERTAD1Q9UHV2 236 aa21.88■■□□□ 1.09
UPF3A-211ENST00000618700 UMODL1Q5DID0 1318 aa21.87■■□□□ 1.09
UPF3A-211ENST00000618700 MYMKA6NI61 221 aa21.87■■□□□ 1.09
UPF3A-211ENST00000618700 ZNF202O95125 648 aa21.87■■□□□ 1.09
UPF3A-211ENST00000618700 ARL2P36404 184 aa21.87■■□□□ 1.09
UPF3A-211ENST00000618700 THPOP40225 353 aa21.87■■□□□ 1.09
UPF3A-211ENST00000618700 DNM2P50570 870 aa21.87■■□□□ 1.09
UPF3A-211ENST00000618700 DHX8Q14562 1220 aaKnown RBP21.87■■□□□ 1.09
UPF3A-211ENST00000618700 FAM26DQ5JW98 314 aa21.87■■□□□ 1.09
UPF3A-211ENST00000618700 PRPF38BQ5VTL8 546 aaKnown RBP21.87■■□□□ 1.09
UPF3A-211ENST00000618700 DAW1Q8N136 415 aa21.87■■□□□ 1.09
UPF3A-211ENST00000618700 PSPC1Q8WXF1 523 aaKnown RBP21.87■■□□□ 1.09
UPF3A-211ENST00000618700 POLR3FQ9H1D9 316 aaPredicted RBP21.87■■□□□ 1.09
UPF3A-211ENST00000618700 PRDM5Q9NQX1 630 aaPredicted RBP21.87■■□□□ 1.09
UPF3A-211ENST00000618700 SUCLA2Q9P2R7 463 aaPredicted RBP21.87■■□□□ 1.09
UPF3A-211ENST00000618700 AKT3Q9Y243 479 aa21.87■■□□□ 1.09
UPF3A-211ENST00000618700 SIP14410 1827 aa21.87■■□□□ 1.09
UPF3A-211ENST00000618700 GOLGA6L22H0YM25 854 aa21.86■■□□□ 1.09
UPF3A-211ENST00000618700 HIP1RO75146 1068 aa21.86■■□□□ 1.09
UPF3A-211ENST00000618700 VTNP04004 478 aa21.86■■□□□ 1.09
UPF3A-211ENST00000618700 MRPS6P82932 125 aaKnown RBP21.86■■□□□ 1.09
UPF3A-211ENST00000618700 ZNF618Q5T7W0 954 aa21.86■■□□□ 1.09
UPF3A-211ENST00000618700 CEP57L1Q8IYX8 460 aa21.86■■□□□ 1.09
UPF3A-211ENST00000618700 ASAP3Q8TDY4 903 aa21.86■■□□□ 1.09
UPF3A-211ENST00000618700 REEP2Q9BRK0 252 aa21.86■■□□□ 1.09
UPF3A-211ENST00000618700 WNT8AQ9H1J5 351 aa21.86■■□□□ 1.09
UPF3A-211ENST00000618700 LTBP2Q14767 1821 aa21.85■■□□□ 1.09
UPF3A-211ENST00000618700 NPHP3-ACAD11A0A0J9YXS1 232 aa21.85■■□□□ 1.09
UPF3A-211ENST00000618700 GPR32O75388 356 aa21.85■■□□□ 1.09
UPF3A-211ENST00000618700 NR1I2O75469 434 aa21.85■■□□□ 1.09
UPF3A-211ENST00000618700 CTSHP09668 335 aa21.85■■□□□ 1.09
UPF3A-211ENST00000618700 SELPP16109 830 aa21.85■■□□□ 1.09
UPF3A-211ENST00000618700 ITGB8P26012 769 aa21.85■■□□□ 1.09
UPF3A-211ENST00000618700 GIT2Q14161 759 aa21.85■■□□□ 1.09
UPF3A-211ENST00000618700 FAM102BQ5T8I3 360 aa21.85■■□□□ 1.09
UPF3A-211ENST00000618700 CNNM4Q6P4Q7 775 aa21.85■■□□□ 1.09
UPF3A-211ENST00000618700 KRBA2Q6ZNG9 492 aa21.85■■□□□ 1.09
UPF3A-211ENST00000618700 LRRC8DQ7L1W4 858 aa21.85■■□□□ 1.09
UPF3A-211ENST00000618700 MAEAQ7L5Y9 396 aa21.85■■□□□ 1.09
UPF3A-211ENST00000618700 ZNF710Q8N1W2 664 aa21.85■■□□□ 1.09
UPF3A-211ENST00000618700 PRPF31Q8WWY3 499 aaKnown RBP21.85■■□□□ 1.09
UPF3A-211ENST00000618700 DDX12PQ92771 950 aa21.85■■□□□ 1.09
UPF3A-211ENST00000618700 DPF3Q92784 378 aa21.85■■□□□ 1.09
UPF3A-211ENST00000618700 KIFAP3Q92845 792 aa21.85■■□□□ 1.09
UPF3A-211ENST00000618700 DNAJC19Q96DA6 116 aa21.85■■□□□ 1.09
UPF3A-211ENST00000618700 PPP1R12CQ9BZL4 782 aa21.85■■□□□ 1.09
UPF3A-211ENST00000618700 TRIM9Q9C026 710 aa21.85■■□□□ 1.09
UPF3A-211ENST00000618700 ADAMTS10Q9H324 1103 aa21.85■■□□□ 1.09
UPF3A-211ENST00000618700 ODF2LQ9ULJ1 636 aa21.85■■□□□ 1.09
UPF3A-211ENST00000618700 COL4A3BPQ9Y5P4 624 aa21.85■■□□□ 1.09
UPF3A-211ENST00000618700 TRPV2Q9Y5S1 764 aa21.85■■□□□ 1.09
UPF3A-211ENST00000618700 CDY2AQ9Y6F7 541 aa21.85■■□□□ 1.09
UPF3A-211ENST00000618700 TIMP1P01033 207 aa21.84■■□□□ 1.09
UPF3A-211ENST00000618700 CHRNA1P02708 482 aa21.84■■□□□ 1.09
UPF3A-211ENST00000618700 GLRA2P23416 452 aa21.84■■□□□ 1.09
UPF3A-211ENST00000618700 GPC3P51654 580 aa21.84■■□□□ 1.09
UPF3A-211ENST00000618700 RAD51AP2Q09MP3 1159 aa21.84■■□□□ 1.09
UPF3A-211ENST00000618700 TMEM62Q0P6H9 643 aa21.84■■□□□ 1.09
UPF3A-211ENST00000618700 LAMTOR4Q0VGL1 99 aa21.84■■□□□ 1.09
UPF3A-211ENST00000618700 MXD4Q14582 209 aaPredicted RBP21.84■■□□□ 1.09
UPF3A-211ENST00000618700 BSNDQ8WZ55 320 aa21.84■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms