RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 RNF25Q96BH1 459 aaPredicted RBP15.02■□□□□ -0
CPSF1-212ENST00000616140 FAM213AQ9BRX8 229 aa15.02■□□□□ -0
CPSF1-212ENST00000616140 AMACRQ9UHK6 382 aa15.02■□□□□ -0
CPSF1-212ENST00000616140 SPHKAPQ2M3C7 1700 aa15.02■□□□□ -0
CPSF1-212ENST00000616140 DENND3A2RUS2 1198 aa15.02■□□□□ -0
CPSF1-212ENST00000616140 CLDN3O15551 220 aa15.02■□□□□ -0
CPSF1-212ENST00000616140 TJP3O95049 919 aa15.02■□□□□ -0
CPSF1-212ENST00000616140 ESRRAP11474 423 aaPredicted RBP15.02■□□□□ -0
CPSF1-212ENST00000616140 ZNF18P17022 549 aa15.02■□□□□ -0
CPSF1-212ENST00000616140 DPYDQ12882 1025 aa15.02■□□□□ -0
CPSF1-212ENST00000616140 NR1I3Q14994 352 aa15.02■□□□□ -0
CPSF1-212ENST00000616140 JADE1Q6IE81 842 aa15.02■□□□□ -0
CPSF1-212ENST00000616140 PDXDC1Q6P996 788 aa15.02■□□□□ -0
CPSF1-212ENST00000616140 EXOC8Q8IYI6 725 aa15.02■□□□□ -0
CPSF1-212ENST00000616140 ENGASEQ8NFI3 743 aa15.02■□□□□ -0
CPSF1-212ENST00000616140 G3BP2Q9UN86 482 aaKnown RBP15.02■□□□□ -0
CPSF1-212ENST00000616140 PLS3P13797 630 aa15.02□□□□□ -0.01
CPSF1-212ENST00000616140 RFX5P48382 616 aaPredicted RBP15.02□□□□□ -0.01
CPSF1-212ENST00000616140 VAMP7P51809 220 aa15.02□□□□□ -0.01
CPSF1-212ENST00000616140 CCNA1P78396 465 aa15.02□□□□□ -0.01
CPSF1-212ENST00000616140 ZNF667Q5HYK9 610 aa15.02□□□□□ -0.01
CPSF1-212ENST00000616140 TPX2Q9ULW0 747 aaKnown RBP15.02□□□□□ -0.01
CPSF1-212ENST00000616140 ZNF564Q8TBZ8 553 aaPredicted RBP15.02□□□□□ -0.01
CPSF1-212ENST00000616140 EPB41L4AQ9HCS5 686 aaPredicted RBP15.02□□□□□ -0.01
CPSF1-212ENST00000616140 SEL1LQ9UBV2 794 aa15.02□□□□□ -0.01
CPSF1-212ENST00000616140 TLK1Q9UKI8 766 aa15.02□□□□□ -0.01
CPSF1-212ENST00000616140 ARHGEF40Q8TER5 1519 aa15.01□□□□□ -0.01
CPSF1-212ENST00000616140 GRIN1Q05586 938 aa15.01□□□□□ -0.01
CPSF1-212ENST00000616140 SMIM5Q71RC9 77 aa15.01□□□□□ -0.01
CPSF1-212ENST00000616140 RASGRP2Q7LDG7 609 aa15.01□□□□□ -0.01
CPSF1-212ENST00000616140 NLRP7Q8WX94 980 aa15.01□□□□□ -0.01
CPSF1-212ENST00000616140 MAML1Q92585 1016 aa15.01□□□□□ -0.01
CPSF1-212ENST00000616140 RPF1Q9H9Y2 349 aaKnown RBP15.01□□□□□ -0.01
CPSF1-212ENST00000616140 TRIM10Q9UDY6 481 aa15.01□□□□□ -0.01
CPSF1-212ENST00000616140 NOC2LQ9Y3T9 749 aaKnown RBP15.01□□□□□ -0.01
CPSF1-212ENST00000616140 GMNCA6NCL1 334 aa15.01□□□□□ -0.01
CPSF1-212ENST00000616140 CSF1RP07333 972 aa15.01□□□□□ -0.01
CPSF1-212ENST00000616140 QARSP47897 775 aaKnown RBP15.01□□□□□ -0.01
CPSF1-212ENST00000616140 JAK3P52333 1124 aa15.01□□□□□ -0.01
CPSF1-212ENST00000616140 COG7P83436 770 aa15.01□□□□□ -0.01
CPSF1-212ENST00000616140 SPARCL1Q14515 664 aa15.01□□□□□ -0.01
CPSF1-212ENST00000616140 PRPSAP1Q14558 356 aa15.01□□□□□ -0.01
CPSF1-212ENST00000616140 BEND6Q5SZJ8 279 aaPredicted RBP15.01□□□□□ -0.01
CPSF1-212ENST00000616140 TTC17Q96AE7 1141 aa15.01□□□□□ -0.01
CPSF1-212ENST00000616140 RAVER2Q9HCJ3 691 aaKnown RBP15.01□□□□□ -0.01
CPSF1-212ENST00000616140 RGL1Q9NZL6 768 aa15.01□□□□□ -0.01
CPSF1-212ENST00000616140 CDC42BPBQ9Y5S2 1711 aa15.01□□□□□ -0.01
CPSF1-212ENST00000616140 ABCB11O95342 1321 aa15.01□□□□□ -0.01
CPSF1-212ENST00000616140 LDHAP00338 332 aaKnown RBP15.01□□□□□ -0.01
CPSF1-212ENST00000616140 OATP04181 439 aa15.01□□□□□ -0.01
CPSF1-212ENST00000616140 SURF1Q15526 300 aa15.01□□□□□ -0.01
CPSF1-212ENST00000616140 TAF11Q15544 211 aa15.01□□□□□ -0.01
CPSF1-212ENST00000616140 SPOUT1Q5T280 376 aaKnown RBP15.01□□□□□ -0.01
CPSF1-212ENST00000616140 CIAPIN1Q6FI81 312 aa15.01□□□□□ -0.01
CPSF1-212ENST00000616140 TRIM59Q8IWR1 403 aa15.01□□□□□ -0.01
CPSF1-212ENST00000616140 PPWD1Q96BP3 646 aaKnown RBP15.01□□□□□ -0.01
CPSF1-212ENST00000616140 TBC1D22BQ9NU19 505 aa15.01□□□□□ -0.01
CPSF1-212ENST00000616140 A0A0G2JND7 137 aa15□□□□□ -0.01
CPSF1-212ENST00000616140 PPP2R2AP63151 447 aa15□□□□□ -0.01
CPSF1-212ENST00000616140 MYO1EQ12965 1108 aa15□□□□□ -0.01
CPSF1-212ENST00000616140 C4orf50Q6ZRC1 276 aa15□□□□□ -0.01
CPSF1-212ENST00000616140 MMS22LQ6ZRQ5 1243 aa15□□□□□ -0.01
CPSF1-212ENST00000616140 CLEC10AQ8IUN9 316 aa15□□□□□ -0.01
CPSF1-212ENST00000616140 RFFLQ8WZ73 363 aa15□□□□□ -0.01
CPSF1-212ENST00000616140 SAAL1Q96ER3 474 aa15□□□□□ -0.01
CPSF1-212ENST00000616140 CFAP36Q96G28 342 aa15□□□□□ -0.01
CPSF1-212ENST00000616140 LXNQ9BS40 222 aa15□□□□□ -0.01
CPSF1-212ENST00000616140 PPP1R9AQ9ULJ8 1098 aa15□□□□□ -0.01
CPSF1-212ENST00000616140 QRICH2Q9H0J4 1663 aa15□□□□□ -0.01
CPSF1-212ENST00000616140 MAPK13O15264 365 aa15□□□□□ -0.01
CPSF1-212ENST00000616140 P4HBP07237 508 aaKnown RBP15□□□□□ -0.01
CPSF1-212ENST00000616140 SRGNP10124 158 aa15□□□□□ -0.01
CPSF1-212ENST00000616140 USP11P51784 963 aa15□□□□□ -0.01
CPSF1-212ENST00000616140 PMS2P54278 862 aa15□□□□□ -0.01
CPSF1-212ENST00000616140 PDIA5Q14554 519 aa15□□□□□ -0.01
CPSF1-212ENST00000616140 HSPH1Q92598 858 aa15□□□□□ -0.01
CPSF1-212ENST00000616140 RBM41Q96IZ5 413 aaKnown RBP15□□□□□ -0.01
CPSF1-212ENST00000616140 NUP85Q9BW27 656 aa15□□□□□ -0.01
CPSF1-212ENST00000616140 FBXL5Q9UKA1 691 aa15□□□□□ -0.01
CPSF1-212ENST00000616140 ADGRB3O60242 1522 aa15□□□□□ -0.01
CPSF1-212ENST00000616140 KRT37O76014 449 aa15□□□□□ -0.01
CPSF1-212ENST00000616140 BRAFP15056 766 aa15□□□□□ -0.01
CPSF1-212ENST00000616140 INTS2Q9H0H0 1204 aaKnown RBP15□□□□□ -0.01
CPSF1-212ENST00000616140 INTUQ9ULD6 942 aa15□□□□□ -0.01
CPSF1-212ENST00000616140 RHOBTB3O94955 611 aa15□□□□□ -0.01
CPSF1-212ENST00000616140 TTLL6Q8N841 843 aa15□□□□□ -0.01
CPSF1-212ENST00000616140 MARCH10Q8NA82 808 aaPredicted RBP15□□□□□ -0.01
CPSF1-212ENST00000616140 FBXO41Q8TF61 875 aa15□□□□□ -0.01
CPSF1-212ENST00000616140 FAM193BQ96PV7 902 aaPredicted RBP15□□□□□ -0.01
CPSF1-212ENST00000616140 EIF2AK1Q9BQI3 630 aaKnown RBP15□□□□□ -0.01
CPSF1-212ENST00000616140 IQANK1A0A1B0GTG1 560 aa14.99□□□□□ -0.01
CPSF1-212ENST00000616140 GRID2IPA4D2P6 1211 aa14.99□□□□□ -0.01
CPSF1-212ENST00000616140 GOLGA8MH3BSY2 632 aa14.99□□□□□ -0.01
CPSF1-212ENST00000616140 KRT39Q6A163 491 aa14.99□□□□□ -0.01
CPSF1-212ENST00000616140 ATP6V1G3Q96LB4 118 aa14.99□□□□□ -0.01
CPSF1-212ENST00000616140 USH1CQ9Y6N9 552 aa14.99□□□□□ -0.01
CPSF1-212ENST00000616140 EMSYQ7Z589 1322 aa14.99□□□□□ -0.01
CPSF1-212ENST00000616140 GYPCP04921 128 aa14.99□□□□□ -0.01
CPSF1-212ENST00000616140 NMT1P30419 496 aaKnown RBP14.99□□□□□ -0.01
CPSF1-212ENST00000616140 CHRNA3P32297 505 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms