RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 UBE3AQ05086 875 aa8.58□□□□□ -1.04
CUX1-219ENST00000606749 ZP2Q05996 745 aa8.58□□□□□ -1.04
CUX1-219ENST00000606749 TBC1D8BQ0IIM8 1120 aa8.58□□□□□ -1.04
CUX1-219ENST00000606749 SCRN1Q12765 414 aa8.58□□□□□ -1.04
CUX1-219ENST00000606749 DRP2Q13474 957 aa8.58□□□□□ -1.04
CUX1-219ENST00000606749 NONOQ15233 471 aaKnown RBP eCLIP8.58□□□□□ -1.042e-6■■□□□ 14.3
CUX1-219ENST00000606749 SMAD2Q15796 467 aaKnown RBP8.58□□□□□ -1.04
CUX1-219ENST00000606749 CLUL1Q15846 466 aa8.58□□□□□ -1.04
CUX1-219ENST00000606749 INF2Q27J81 1249 aa8.58□□□□□ -1.04
CUX1-219ENST00000606749 XKR3Q5GH77 459 aa8.58□□□□□ -1.04
CUX1-219ENST00000606749 SPOUT1Q5T280 376 aaKnown RBP8.58□□□□□ -1.04
CUX1-219ENST00000606749 LRRC55Q6ZSA7 311 aa8.58□□□□□ -1.04
CUX1-219ENST00000606749 KRT25Q7Z3Z0 450 aa8.58□□□□□ -1.04
CUX1-219ENST00000606749 ECHDC2Q86YB7 292 aa8.58□□□□□ -1.04
CUX1-219ENST00000606749 ADHFE1Q8IWW8 467 aa8.58□□□□□ -1.04
CUX1-219ENST00000606749 EFHBQ8N7U6 833 aa8.58□□□□□ -1.04
CUX1-219ENST00000606749 COLGALT1Q8NBJ5 622 aa8.58□□□□□ -1.04
CUX1-219ENST00000606749 MICAL1Q8TDZ2 1067 aa8.58□□□□□ -1.04
CUX1-219ENST00000606749 PPP2R3CQ969Q6 453 aa8.58□□□□□ -1.04
CUX1-219ENST00000606749 MSLNLQ96KJ4 702 aa8.58□□□□□ -1.04
CUX1-219ENST00000606749 CASD1Q96PB1 797 aa8.58□□□□□ -1.04
CUX1-219ENST00000606749 PHF20Q9BVI0 1012 aa8.58□□□□□ -1.04
CUX1-219ENST00000606749 SLKQ9H2G2 1235 aaPredicted RBP8.58□□□□□ -1.04
CUX1-219ENST00000606749 TLE6Q9H808 572 aa8.58□□□□□ -1.04
CUX1-219ENST00000606749 RNF19AQ9NV58 838 aa8.58□□□□□ -1.04
CUX1-219ENST00000606749 CLEC1BQ9P126 229 aa8.58□□□□□ -1.04
CUX1-219ENST00000606749 HCSTQ9UBK5 93 aa8.58□□□□□ -1.04
CUX1-219ENST00000606749 DDX25Q9UHL0 483 aaKnown RBP8.58□□□□□ -1.04
CUX1-219ENST00000606749 CD207Q9UJ71 328 aa8.58□□□□□ -1.04
CUX1-219ENST00000606749 TPCN1Q9ULQ1 816 aa8.58□□□□□ -1.04
CUX1-219ENST00000606749 PCDHGC5Q9Y5F6 944 aa8.58□□□□□ -1.04
CUX1-219ENST00000606749 C5orf42Q9H799 3197 aa8.57□□□□□ -1.04
CUX1-219ENST00000606749 BDP1A6H8Y1 2624 aa8.57□□□□□ -1.04
CUX1-219ENST00000606749 ATG2AQ2TAZ0 1938 aa8.57□□□□□ -1.04
CUX1-219ENST00000606749 IGKV6-21A0A0C4DH24 114 aa8.57□□□□□ -1.04
CUX1-219ENST00000606749 A0A0U1RQF3 1178 aa8.57□□□□□ -1.04
CUX1-219ENST00000606749 TMEM150BA6NC51 233 aa8.57□□□□□ -1.04
CUX1-219ENST00000606749 FAM86C2PA6NEL3 165 aa8.57□□□□□ -1.04
CUX1-219ENST00000606749 EML1O00423 815 aa8.57□□□□□ -1.04
CUX1-219ENST00000606749 PER2O15055 1255 aa8.57□□□□□ -1.04
CUX1-219ENST00000606749 HOXA2O43364 376 aa8.57□□□□□ -1.04
CUX1-219ENST00000606749 SLC37A4O43826 429 aa8.57□□□□□ -1.04
CUX1-219ENST00000606749 PFKFB2O60825 505 aa8.57□□□□□ -1.04
CUX1-219ENST00000606749 DTNBO60941 627 aa8.57□□□□□ -1.04
CUX1-219ENST00000606749 CSDE1O75534 798 aaKnown RBP8.57□□□□□ -1.04
CUX1-219ENST00000606749 CDKL5O76039 1030 aa8.57□□□□□ -1.04
CUX1-219ENST00000606749 EYA4O95677 639 aa8.57□□□□□ -1.04
CUX1-219ENST00000606749 ALADP13716 330 aa8.57□□□□□ -1.04
CUX1-219ENST00000606749 FGFR4P22455 802 aa8.57□□□□□ -1.04
CUX1-219ENST00000606749 NRIP1P48552 1158 aa8.57□□□□□ -1.04
CUX1-219ENST00000606749 DNM2P50570 870 aa8.57□□□□□ -1.04
CUX1-219ENST00000606749 ERVFC1P60507 584 aa8.57□□□□□ -1.04
CUX1-219ENST00000606749 SMAD4Q13485 552 aaKnown RBP8.57□□□□□ -1.04
CUX1-219ENST00000606749 CSPP1Q1MSJ5 1256 aa8.57□□□□□ -1.04
CUX1-219ENST00000606749 MTERF2Q49AM1 385 aa8.57□□□□□ -1.04
CUX1-219ENST00000606749 PDE12Q6L8Q7 609 aaKnown RBP8.57□□□□□ -1.04
CUX1-219ENST00000606749 RBM23Q86U06 439 aaKnown RBP8.57□□□□□ -1.04
CUX1-219ENST00000606749 NLRP7Q8WX94 980 aa8.57□□□□□ -1.04
CUX1-219ENST00000606749 FAM20AQ96MK3 541 aa8.57□□□□□ -1.04
CUX1-219ENST00000606749 SH2D3AQ9BRG2 576 aa8.57□□□□□ -1.04
CUX1-219ENST00000606749 TMEM117Q9H0C3 514 aa8.57□□□□□ -1.04
CUX1-219ENST00000606749 TLR9Q9NR96 1032 aa8.57□□□□□ -1.04
CUX1-219ENST00000606749 GJB4Q9NTQ9 266 aa8.57□□□□□ -1.04
CUX1-219ENST00000606749 SEPT9Q9UHD8 586 aaPredicted RBP8.57□□□□□ -1.04
CUX1-219ENST00000606749 FNDC1Q4ZHG4 1894 aaPredicted RBP8.57□□□□□ -1.04
CUX1-219ENST00000606749 WDR81Q562E7 1941 aa8.56□□□□□ -1.04
CUX1-219ENST00000606749 A0A087WZ62 844 aa8.56□□□□□ -1.04
CUX1-219ENST00000606749 CCDC194A0A1B0GVG4 234 aa8.56□□□□□ -1.04
CUX1-219ENST00000606749 FSCN2O14926 492 aa8.56□□□□□ -1.04
CUX1-219ENST00000606749 MAFO75444 373 aaPredicted RBP8.56□□□□□ -1.04
CUX1-219ENST00000606749 CTDNEP1O95476 244 aa8.56□□□□□ -1.04
CUX1-219ENST00000606749 GLP2RO95838 553 aa8.56□□□□□ -1.04
CUX1-219ENST00000606749 EOMESO95936 686 aa8.56□□□□□ -1.04
CUX1-219ENST00000606749 NEFLP07196 543 aa8.56□□□□□ -1.04
CUX1-219ENST00000606749 XBP1P17861 261 aa8.56□□□□□ -1.04
CUX1-219ENST00000606749 LAG3P18627 525 aa8.56□□□□□ -1.04
CUX1-219ENST00000606749 NDUFV1P49821 464 aa8.56□□□□□ -1.04
CUX1-219ENST00000606749 PSMC5P62195 406 aa8.56□□□□□ -1.04
CUX1-219ENST00000606749 PLCB3Q01970 1234 aa8.56□□□□□ -1.04
CUX1-219ENST00000606749 COASYQ13057 564 aa8.56□□□□□ -1.04
CUX1-219ENST00000606749 PPP2R5CQ13362 524 aa8.56□□□□□ -1.04
CUX1-219ENST00000606749 LETM2Q2VYF4 491 aa8.56□□□□□ -1.04
CUX1-219ENST00000606749 CLLU1OSQ5K130 101 aa8.56□□□□□ -1.04
CUX1-219ENST00000606749 PPP4R3AQ6IN85 833 aa8.56□□□□□ -1.04
CUX1-219ENST00000606749 ANO5Q75V66 913 aa8.56□□□□□ -1.04
CUX1-219ENST00000606749 NEK8Q86SG6 692 aa8.56□□□□□ -1.04
CUX1-219ENST00000606749 ZNF598Q86UK7 904 aaKnown RBP8.56□□□□□ -1.04
CUX1-219ENST00000606749 THNSL1Q8IYQ7 743 aa8.56□□□□□ -1.04
CUX1-219ENST00000606749 OXER1Q8TDS5 423 aa8.56□□□□□ -1.04
CUX1-219ENST00000606749 MRPS27Q92552 414 aaKnown RBP8.56□□□□□ -1.04
CUX1-219ENST00000606749 HAS1Q92839 578 aa8.56□□□□□ -1.04
CUX1-219ENST00000606749 SCLT1Q96NL6 688 aa8.56□□□□□ -1.04
CUX1-219ENST00000606749 FDXACB1Q9BRP7 624 aaPredicted RBP8.56□□□□□ -1.04
CUX1-219ENST00000606749 GCOM2Q9BZD3 368 aaPredicted RBP8.56□□□□□ -1.04
CUX1-219ENST00000606749 KCNMB3Q9NPA1 279 aa8.56□□□□□ -1.04
CUX1-219ENST00000606749 CHST12Q9NRB3 414 aa8.56□□□□□ -1.04
CUX1-219ENST00000606749 SUCLA2Q9P2R7 463 aaPredicted RBP8.56□□□□□ -1.04
CUX1-219ENST00000606749 PUF60Q9UHX1 559 aaKnown RBP8.56□□□□□ -1.04
CUX1-219ENST00000606749 LZTS1Q9Y250 596 aa8.56□□□□□ -1.04
CUX1-219ENST00000606749 ARIH1Q9Y4X5 557 aaPredicted RBP8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms