RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 SPATA20Q8TB22 786 aa11.18□□□□□ -0.62
UPF1-213ENST00000601981 TRAPPC12Q8WVT3 735 aa11.18□□□□□ -0.62
UPF1-213ENST00000601981 TCP11Q8WWU5 503 aa11.18□□□□□ -0.62
UPF1-213ENST00000601981 ERCC4Q92889 916 aaPredicted RBP11.18□□□□□ -0.62
UPF1-213ENST00000601981 SMARCE1Q969G3 411 aa11.18□□□□□ -0.62
UPF1-213ENST00000601981 PAGE5Q96GU1 130 aa11.18□□□□□ -0.62
UPF1-213ENST00000601981 CUEDC2Q9H467 287 aa11.18□□□□□ -0.62
UPF1-213ENST00000601981 MAGEF1Q9HAY2 307 aa11.18□□□□□ -0.62
UPF1-213ENST00000601981 ATP6V0A4Q9HBG4 840 aa11.18□□□□□ -0.62
UPF1-213ENST00000601981 TBX21Q9UL17 535 aa11.18□□□□□ -0.62
UPF1-213ENST00000601981 PCDHA5Q9Y5H7 936 aa11.18□□□□□ -0.62
UPF1-213ENST00000601981 CEP290O15078 2479 aa11.17□□□□□ -0.62
UPF1-213ENST00000601981 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.17□□□□□ -0.62
UPF1-213ENST00000601981 MAFO75444 373 aaPredicted RBP11.17□□□□□ -0.62
UPF1-213ENST00000601981 C22orf31O95567 290 aa11.17□□□□□ -0.62
UPF1-213ENST00000601981 EYA4O95677 639 aa11.17□□□□□ -0.62
UPF1-213ENST00000601981 TIMP1P01033 207 aa11.17□□□□□ -0.62
UPF1-213ENST00000601981 PRR29P0C7W0 189 aa11.17□□□□□ -0.62
UPF1-213ENST00000601981 SELPP16109 830 aa11.17□□□□□ -0.62
UPF1-213ENST00000601981 RFC2P35250 354 aa11.17□□□□□ -0.62
UPF1-213ENST00000601981 THPOP40225 353 aa11.17□□□□□ -0.62
UPF1-213ENST00000601981 SARSP49591 514 aaKnown RBP11.17□□□□□ -0.62
UPF1-213ENST00000601981 RARRES1P49788 294 aa11.17□□□□□ -0.62
UPF1-213ENST00000601981 RBL2Q08999 1139 aa11.17□□□□□ -0.62
UPF1-213ENST00000601981 TARBP2Q15633 366 aaKnown RBP11.17□□□□□ -0.62
UPF1-213ENST00000601981 DPCR1Q3MIW9 517 aa11.17□□□□□ -0.62
UPF1-213ENST00000601981 MARCH8Q5T0T0 291 aa11.17□□□□□ -0.62
UPF1-213ENST00000601981 EFCAB12Q6NXP0 572 aa11.17□□□□□ -0.62
UPF1-213ENST00000601981 RPAINQ86UA6 219 aa11.17□□□□□ -0.62
UPF1-213ENST00000601981 LUZP1Q86V48 1076 aa11.17□□□□□ -0.62
UPF1-213ENST00000601981 MCPH1Q8NEM0 835 aa11.17□□□□□ -0.62
UPF1-213ENST00000601981 PIGOQ8TEQ8 1089 aa11.17□□□□□ -0.62
UPF1-213ENST00000601981 MTRQ99707 1265 aa11.17□□□□□ -0.62
UPF1-213ENST00000601981 MMTAG2Q9BU76 263 aaKnown RBP11.17□□□□□ -0.62
UPF1-213ENST00000601981 NOC4LQ9BVI4 516 aaKnown RBP11.17□□□□□ -0.62
UPF1-213ENST00000601981 PPP1R12CQ9BZL4 782 aa11.17□□□□□ -0.62
UPF1-213ENST00000601981 FAM49AQ9H0Q0 323 aaPredicted RBP11.17□□□□□ -0.62
UPF1-213ENST00000601981 SUGCTQ9HAC7 445 aa11.17□□□□□ -0.62
UPF1-213ENST00000601981 WRAP73Q9P2S5 460 aaPredicted RBP11.17□□□□□ -0.62
UPF1-213ENST00000601981 STK17AQ9UEE5 414 aa11.17□□□□□ -0.62
UPF1-213ENST00000601981 AKT3Q9Y243 479 aa11.17□□□□□ -0.62
UPF1-213ENST00000601981 SCN5AQ14524 2016 aa11.16□□□□□ -0.62
UPF1-213ENST00000601981 BECN2A8MW95 431 aa11.16□□□□□ -0.62
UPF1-213ENST00000601981 ZBTB42B2RXF5 422 aa11.16□□□□□ -0.62
UPF1-213ENST00000601981 GOLGA6L19H0YKK7 550 aa11.16□□□□□ -0.62
UPF1-213ENST00000601981 BIN1O00499 593 aa11.16□□□□□ -0.62
UPF1-213ENST00000601981 GTPBP6O43824 516 aaPredicted RBP11.16□□□□□ -0.62
UPF1-213ENST00000601981 USO1O60763 962 aaKnown RBP11.16□□□□□ -0.62
UPF1-213ENST00000601981 STBD1O95210 358 aa11.16□□□□□ -0.62
UPF1-213ENST00000601981 SSBP05455 408 aaKnown RBP eCLIP11.16□□□□□ -0.62
UPF1-213ENST00000601981 MYL1P05976 194 aa11.16□□□□□ -0.62
UPF1-213ENST00000601981 CKBP12277 381 aa11.16□□□□□ -0.62
UPF1-213ENST00000601981 PLCG1P19174 1290 aa11.16□□□□□ -0.62
UPF1-213ENST00000601981 STAT6P42226 847 aa11.16□□□□□ -0.62
UPF1-213ENST00000601981 NPEPPSP55786 919 aa11.16□□□□□ -0.62
UPF1-213ENST00000601981 DPYDQ12882 1025 aa11.16□□□□□ -0.62
UPF1-213ENST00000601981 GRB10Q13322 594 aa11.16□□□□□ -0.62
UPF1-213ENST00000601981 MORC3Q14149 939 aa11.16□□□□□ -0.62
UPF1-213ENST00000601981 EMC2Q15006 297 aa11.16□□□□□ -0.62
UPF1-213ENST00000601981 KARSQ15046 597 aaKnown RBP11.16□□□□□ -0.62
UPF1-213ENST00000601981 TMEM119Q4V9L6 283 aa11.16□□□□□ -0.62
UPF1-213ENST00000601981 RRAGBQ5VZM2 374 aa11.16□□□□□ -0.62
UPF1-213ENST00000601981 MFSD5Q6N075 450 aa11.16□□□□□ -0.62
UPF1-213ENST00000601981 LRRC8DQ7L1W4 858 aa11.16□□□□□ -0.62
UPF1-213ENST00000601981 DHX40Q8IX18 779 aaKnown RBP11.16□□□□□ -0.62
UPF1-213ENST00000601981 GRAMD1CQ8IYS0 662 aa11.16□□□□□ -0.62
UPF1-213ENST00000601981 DNAJB3Q8WWF6 145 aa11.16□□□□□ -0.62
UPF1-213ENST00000601981 SCLT1Q96NL6 688 aa11.16□□□□□ -0.62
UPF1-213ENST00000601981 TIPINQ9BVW5 301 aa11.16□□□□□ -0.62
UPF1-213ENST00000601981 BHMT2Q9H2M3 363 aa11.16□□□□□ -0.62
UPF1-213ENST00000601981 DHX33Q9H6R0 707 aaKnown RBP11.16□□□□□ -0.62
UPF1-213ENST00000601981 KCND2Q9NZV8 630 aa11.16□□□□□ -0.62
UPF1-213ENST00000601981 DACH1Q9UI36 760 aa11.16□□□□□ -0.62
UPF1-213ENST00000601981 MAN1B1Q9UKM7 699 aa11.16□□□□□ -0.62
UPF1-213ENST00000601981 ZMYND8Q9ULU4 1186 aaPredicted RBP11.16□□□□□ -0.62
UPF1-213ENST00000601981 SIP14410 1827 aa11.15□□□□□ -0.62
UPF1-213ENST00000601981 A0A087WWV3 80 aa11.15□□□□□ -0.62
UPF1-213ENST00000601981 TMEM150BA6NC51 233 aa11.15□□□□□ -0.62
UPF1-213ENST00000601981 TRIM43BA6NCK2 446 aa11.15□□□□□ -0.62
UPF1-213ENST00000601981 SMTNL1A8MU46 457 aa11.15□□□□□ -0.62
UPF1-213ENST00000601981 RSPH10B2B2RC85 870 aa11.15□□□□□ -0.62
UPF1-213ENST00000601981 E9PMD0 336 aa11.15□□□□□ -0.62
UPF1-213ENST00000601981 IKBKBO14920 756 aa11.15□□□□□ -0.62
UPF1-213ENST00000601981 ASAP2O43150 1006 aa11.15□□□□□ -0.62
UPF1-213ENST00000601981 PFKMP08237 780 aa11.15□□□□□ -0.62
UPF1-213ENST00000601981 RSPH10BP0C881 870 aa11.15□□□□□ -0.62
UPF1-213ENST00000601981 SYN1P17600 705 aa11.15□□□□□ -0.62
UPF1-213ENST00000601981 CLCN3P51790 818 aa11.15□□□□□ -0.62
UPF1-213ENST00000601981 MRPS6P82932 125 aaKnown RBP11.15□□□□□ -0.62
UPF1-213ENST00000601981 FPGSQ05932 587 aa11.15□□□□□ -0.62
UPF1-213ENST00000601981 PPIGQ13427 754 aaKnown RBP eCLIP11.15□□□□□ -0.628e-7■■■□□ 16.9
UPF1-213ENST00000601981 HIC1Q14526 733 aa11.15□□□□□ -0.62
UPF1-213ENST00000601981 MXD4Q14582 209 aaPredicted RBP11.15□□□□□ -0.62
UPF1-213ENST00000601981 NAALADL2Q58DX5 795 aa11.15□□□□□ -0.62
UPF1-213ENST00000601981 CT47A1Q5JQC4 288 aaPredicted RBP11.15□□□□□ -0.62
UPF1-213ENST00000601981 ODR4Q5SWX8 454 aa11.15□□□□□ -0.62
UPF1-213ENST00000601981 SARM1Q6SZW1 724 aa11.15□□□□□ -0.62
UPF1-213ENST00000601981 PADI6Q6TGC4 694 aa11.15□□□□□ -0.62
UPF1-213ENST00000601981 RUFY4Q6ZNE9 571 aa11.15□□□□□ -0.62
UPF1-213ENST00000601981 RPUSD2Q8IZ73 545 aaKnown RBP11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms