RNA–Protein interactions for RNA: ENST00000600879.5

HIF3A-219, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 4

Gene HIF3A, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-219ENST00000600879 CLCN3P51790 818 aa11.33□□□□□ -0.6
HIF3A-219ENST00000600879 CRYBB1P53674 252 aaPredicted RBP11.33□□□□□ -0.6
HIF3A-219ENST00000600879 RSPO4Q2I0M5 234 aaPredicted RBP11.33□□□□□ -0.6
HIF3A-219ENST00000600879 LONRF3Q496Y0 759 aa11.33□□□□□ -0.6
HIF3A-219ENST00000600879 CLLU1OSQ5K130 101 aa11.33□□□□□ -0.6
HIF3A-219ENST00000600879 ATAT1Q5SQI0 421 aa11.33□□□□□ -0.6
HIF3A-219ENST00000600879 ODR4Q5SWX8 454 aa11.33□□□□□ -0.6
HIF3A-219ENST00000600879 KIAA1841Q6NSI8 718 aa11.33□□□□□ -0.6
HIF3A-219ENST00000600879 PDXDC2PQ6P474 469 aa11.33□□□□□ -0.6
HIF3A-219ENST00000600879 CCDC60Q8IWA6 550 aaPredicted RBP11.33□□□□□ -0.6
HIF3A-219ENST00000600879 CKAP2LQ8IYA6 745 aa11.33□□□□□ -0.6
HIF3A-219ENST00000600879 SLC39A11Q8N1S5 342 aa11.33□□□□□ -0.6
HIF3A-219ENST00000600879 ELAC1Q9H777 363 aaKnown RBP11.33□□□□□ -0.6
HIF3A-219ENST00000600879 LY9Q9HBG7 655 aa11.33□□□□□ -0.6
HIF3A-219ENST00000600879 AGO4Q9HCK5 861 aaKnown RBP11.33□□□□□ -0.6
HIF3A-219ENST00000600879 CA14Q9ULX7 337 aa11.33□□□□□ -0.6
HIF3A-219ENST00000600879 NFASCO94856 1347 aa11.33□□□□□ -0.6
HIF3A-219ENST00000600879 CACNA1BQ00975 2339 aa11.32□□□□□ -0.6
HIF3A-219ENST00000600879 KRBA1A5PL33 1030 aa11.32□□□□□ -0.6
HIF3A-219ENST00000600879 SPDYE4A6NLX3 237 aa11.32□□□□□ -0.6
HIF3A-219ENST00000600879 ZBTB42B2RXF5 422 aa11.32□□□□□ -0.6
HIF3A-219ENST00000600879 HOXA2O43364 376 aa11.32□□□□□ -0.6
HIF3A-219ENST00000600879 DDAH1O94760 285 aa11.32□□□□□ -0.6
HIF3A-219ENST00000600879 C22orf31O95567 290 aa11.32□□□□□ -0.6
HIF3A-219ENST00000600879 FGFR4P22455 802 aa11.32□□□□□ -0.6
HIF3A-219ENST00000600879 TDGQ13569 410 aa11.32□□□□□ -0.6
HIF3A-219ENST00000600879 PUM1Q14671 1186 aaKnown RBP eCLIP11.32□□□□□ -0.6
HIF3A-219ENST00000600879 FAM160B1Q5W0V3 765 aa11.32□□□□□ -0.6
HIF3A-219ENST00000600879 SWSAP1Q6NVH7 229 aa11.32□□□□□ -0.6
HIF3A-219ENST00000600879 ECHDC2Q86YB7 292 aa11.32□□□□□ -0.6
HIF3A-219ENST00000600879 MB21D2Q8IYB1 491 aaPredicted RBP11.32□□□□□ -0.6
HIF3A-219ENST00000600879 VPS52Q8N1B4 723 aa11.32□□□□□ -0.6
HIF3A-219ENST00000600879 PLCD3Q8N3E9 789 aa11.32□□□□□ -0.6
HIF3A-219ENST00000600879 BCL7CQ8WUZ0 217 aaPredicted RBP11.32□□□□□ -0.6
HIF3A-219ENST00000600879 KCNK12Q9HB15 430 aa11.32□□□□□ -0.6
HIF3A-219ENST00000600879 ZNF302Q9NR11 478 aa11.32□□□□□ -0.6
HIF3A-219ENST00000600879 CYP26B1Q9NR63 512 aa11.32□□□□□ -0.6
HIF3A-219ENST00000600879 EPG5Q9HCE0 2579 aa11.31□□□□□ -0.6
HIF3A-219ENST00000600879 GPR32O75388 356 aa11.31□□□□□ -0.6
HIF3A-219ENST00000600879 ATG7O95352 703 aa11.31□□□□□ -0.6
HIF3A-219ENST00000600879 ZSCAN20P17040 1043 aaPredicted RBP11.31□□□□□ -0.6
HIF3A-219ENST00000600879 ATP4AP20648 1035 aa11.31□□□□□ -0.6
HIF3A-219ENST00000600879 SLC26A2P50443 739 aa11.31□□□□□ -0.6
HIF3A-219ENST00000600879 BCAR1P56945 870 aa11.31□□□□□ -0.6
HIF3A-219ENST00000600879 NLRP11P59045 1033 aaKnown RBP11.31□□□□□ -0.6
HIF3A-219ENST00000600879 COL9A3Q14050 684 aaPredicted RBP11.31□□□□□ -0.6
HIF3A-219ENST00000600879 CEP55Q53EZ4 464 aa11.31□□□□□ -0.6
HIF3A-219ENST00000600879 ZNF484Q5JVG2 852 aa11.31□□□□□ -0.6
HIF3A-219ENST00000600879 ABHD15Q6UXT9 468 aa11.31□□□□□ -0.6
HIF3A-219ENST00000600879 SKAP1Q86WV1 359 aa11.31□□□□□ -0.6
HIF3A-219ENST00000600879 LRRC71Q8N4P6 559 aa11.31□□□□□ -0.6
HIF3A-219ENST00000600879 SLC22A17Q8WUG5 538 aa11.31□□□□□ -0.6
HIF3A-219ENST00000600879 TMEM169Q96HH4 297 aa11.31□□□□□ -0.6
HIF3A-219ENST00000600879 LZTS2Q9BRK4 669 aa11.31□□□□□ -0.6
HIF3A-219ENST00000600879 ANO3Q9BYT9 981 aa11.31□□□□□ -0.6
HIF3A-219ENST00000600879 DZANK1Q9NVP4 752 aa11.31□□□□□ -0.6
HIF3A-219ENST00000600879 DUSP12Q9UNI6 340 aa11.31□□□□□ -0.6
HIF3A-219ENST00000600879 AKT3Q9Y243 479 aa11.31□□□□□ -0.6
HIF3A-219ENST00000600879 COL1A2P08123 1366 aa11.3□□□□□ -0.6
HIF3A-219ENST00000600879 IGKV6D-21A0A0A0MT36 114 aa11.3□□□□□ -0.6
HIF3A-219ENST00000600879 POTEMA6NI47 508 aa11.3□□□□□ -0.6
HIF3A-219ENST00000600879 CCDC69A6NI79 296 aa11.3□□□□□ -0.6
HIF3A-219ENST00000600879 PRC1O43663 620 aa11.3□□□□□ -0.6
HIF3A-219ENST00000600879 N4BP1O75113 896 aaKnown RBP11.3□□□□□ -0.6
HIF3A-219ENST00000600879 ZC3H11AO75152 810 aaKnown RBP eCLIP11.3□□□□□ -0.6
HIF3A-219ENST00000600879 LRRN2O75325 713 aa11.3□□□□□ -0.6
HIF3A-219ENST00000600879 CSDE1O75534 798 aaKnown RBP11.3□□□□□ -0.6
HIF3A-219ENST00000600879 SSBP05455 408 aaKnown RBP eCLIP11.3□□□□□ -0.6
HIF3A-219ENST00000600879 RFX1P22670 979 aa11.3□□□□□ -0.6
HIF3A-219ENST00000600879 SMARCA1P28370 1054 aa11.3□□□□□ -0.6
HIF3A-219ENST00000600879 ZNF76P36508 570 aa11.3□□□□□ -0.6
HIF3A-219ENST00000600879 GNAQP50148 359 aa11.3□□□□□ -0.6
HIF3A-219ENST00000600879 WWC2Q6AWC2 1192 aa11.3□□□□□ -0.6
HIF3A-219ENST00000600879 TYW1BQ6NUM6 668 aa11.3□□□□□ -0.6
HIF3A-219ENST00000600879 POTEGQ6S5H5 508 aa11.3□□□□□ -0.6
HIF3A-219ENST00000600879 CASC1Q6TDU7 716 aa11.3□□□□□ -0.6
HIF3A-219ENST00000600879 CCDC149Q6ZUS6 474 aa11.3□□□□□ -0.6
HIF3A-219ENST00000600879 CABP7Q86V35 215 aa11.3□□□□□ -0.6
HIF3A-219ENST00000600879 ACSF2Q96CM8 615 aaPredicted RBP11.3□□□□□ -0.6
HIF3A-219ENST00000600879 SCLT1Q96NL6 688 aa11.3□□□□□ -0.6
HIF3A-219ENST00000600879 MAP3K14Q99558 947 aa11.3□□□□□ -0.6
HIF3A-219ENST00000600879 RTP3Q9BQQ7 232 aa11.3□□□□□ -0.6
HIF3A-219ENST00000600879 ZBP1Q9H171 429 aa11.3□□□□□ -0.6
HIF3A-219ENST00000600879 DLL3Q9NYJ7 618 aa11.3□□□□□ -0.6
HIF3A-219ENST00000600879 USTQ9Y2C2 406 aa11.3□□□□□ -0.6
HIF3A-219ENST00000600879 KMT2BQ9UMN6 2715 aaPredicted RBP11.3□□□□□ -0.6
HIF3A-219ENST00000600879 SH2B2O14492 632 aaPredicted RBP11.29□□□□□ -0.6
HIF3A-219ENST00000600879 SP9P0CG40 484 aa11.29□□□□□ -0.6
HIF3A-219ENST00000600879 GSPT1P15170 499 aaKnown RBP11.29□□□□□ -0.6
HIF3A-219ENST00000600879 ALDH7A1P49419 539 aaKnown RBP11.29□□□□□ -0.6
HIF3A-219ENST00000600879 NAPAP54920 295 aa11.29□□□□□ -0.6
HIF3A-219ENST00000600879 BMS1Q14692 1282 aaKnown RBP11.29□□□□□ -0.6
HIF3A-219ENST00000600879 MIS18BP1Q6P0N0 1132 aa11.29□□□□□ -0.6
HIF3A-219ENST00000600879 LPPQ93052 612 aa11.29□□□□□ -0.6
HIF3A-219ENST00000600879 LRRC2Q9BYS8 371 aa11.29□□□□□ -0.6
HIF3A-219ENST00000600879 GBP3Q9H0R5 595 aa11.29□□□□□ -0.6
HIF3A-219ENST00000600879 ADAMTS10Q9H324 1103 aa11.29□□□□□ -0.6
HIF3A-219ENST00000600879 TBC1D17Q9HA65 648 aa11.29□□□□□ -0.6
HIF3A-219ENST00000600879 INPP5FQ9Y2H2 1132 aa11.29□□□□□ -0.6
HIF3A-219ENST00000600879 COL4A3Q01955 1670 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms