RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 TFDP1Q14186 410 aa18.38■□□□□ 0.53
SHKBP1-219ENST00000599575 PPP2R5AQ15172 486 aa18.38■□□□□ 0.53
SHKBP1-219ENST00000599575 RINT1Q6NUQ1 792 aa18.38■□□□□ 0.53
SHKBP1-219ENST00000599575 PSRC1Q6PGN9 363 aaPredicted RBP18.38■□□□□ 0.53
SHKBP1-219ENST00000599575 C1orf186Q6ZWK4 172 aa18.38■□□□□ 0.53
SHKBP1-219ENST00000599575 KCNK18Q7Z418 384 aa18.38■□□□□ 0.53
SHKBP1-219ENST00000599575 PRPF31Q8WWY3 499 aaKnown RBP18.38■□□□□ 0.53
SHKBP1-219ENST00000599575 APBB2Q92870 758 aa18.38■□□□□ 0.53
SHKBP1-219ENST00000599575 GDF15Q99988 308 aa18.38■□□□□ 0.53
SHKBP1-219ENST00000599575 NFKBIZQ9BYH8 718 aa18.38■□□□□ 0.53
SHKBP1-219ENST00000599575 BMP2KQ9NSY1 1161 aaPredicted RBP18.38■□□□□ 0.53
SHKBP1-219ENST00000599575 BLOC1S4Q9NUP1 217 aa18.38■□□□□ 0.53
SHKBP1-219ENST00000599575 KCNH3Q9ULD8 1083 aa18.38■□□□□ 0.53
SHKBP1-219ENST00000599575 ODF2LQ9ULJ1 636 aa18.38■□□□□ 0.53
SHKBP1-219ENST00000599575 COL4A3BPQ9Y5P4 624 aa18.38■□□□□ 0.53
SHKBP1-219ENST00000599575 CDY2AQ9Y6F7 541 aa18.38■□□□□ 0.53
SHKBP1-219ENST00000599575 WDR81Q562E7 1941 aa18.38■□□□□ 0.53
SHKBP1-219ENST00000599575 UMODL1Q5DID0 1318 aa18.38■□□□□ 0.53
SHKBP1-219ENST00000599575 PDE4DIPQ5VU43 2346 aa18.38■□□□□ 0.53
SHKBP1-219ENST00000599575 EFCAB14O75071 495 aa18.37■□□□□ 0.53
SHKBP1-219ENST00000599575 GPR32O75388 356 aa18.37■□□□□ 0.53
SHKBP1-219ENST00000599575 CSF2RAP15509 400 aa18.37■□□□□ 0.53
SHKBP1-219ENST00000599575 MAGEA10P43363 369 aaPredicted RBP18.37■□□□□ 0.53
SHKBP1-219ENST00000599575 GPC3P51654 580 aa18.37■□□□□ 0.53
SHKBP1-219ENST00000599575 NLRP11P59045 1033 aaKnown RBP18.37■□□□□ 0.53
SHKBP1-219ENST00000599575 AMPD3Q01432 767 aa18.37■□□□□ 0.53
SHKBP1-219ENST00000599575 TSHZ1Q6ZSZ6 1077 aa18.37■□□□□ 0.53
SHKBP1-219ENST00000599575 SV2BQ7L1I2 683 aa18.37■□□□□ 0.53
SHKBP1-219ENST00000599575 TMEM87AQ8NBN3 555 aa18.37■□□□□ 0.53
SHKBP1-219ENST00000599575 ZBTB10Q96DT7 871 aa18.37■□□□□ 0.53
SHKBP1-219ENST00000599575 GCOM2Q9BZD3 368 aaPredicted RBP18.37■□□□□ 0.53
SHKBP1-219ENST00000599575 ADAMTS10Q9H324 1103 aa18.37■□□□□ 0.53
SHKBP1-219ENST00000599575 PHLPP2Q6ZVD8 1323 aa18.37■□□□□ 0.53
SHKBP1-219ENST00000599575 A0A087WWV3 80 aa18.36■□□□□ 0.53
SHKBP1-219ENST00000599575 CEP290O15078 2479 aa18.36■□□□□ 0.53
SHKBP1-219ENST00000599575 VTNP04004 478 aa18.36■□□□□ 0.53
SHKBP1-219ENST00000599575 CTSHP09668 335 aa18.36■□□□□ 0.53
SHKBP1-219ENST00000599575 ACTN1P12814 892 aa18.36■□□□□ 0.53
SHKBP1-219ENST00000599575 EIF4BP23588 611 aaKnown RBP18.36■□□□□ 0.53
SHKBP1-219ENST00000599575 LAMTOR4Q0VGL1 99 aa18.36■□□□□ 0.53
SHKBP1-219ENST00000599575 E2F4Q16254 413 aa18.36■□□□□ 0.53
SHKBP1-219ENST00000599575 NAALADL2Q58DX5 795 aa18.36■□□□□ 0.53
SHKBP1-219ENST00000599575 FBXO47Q5MNV8 452 aa18.36■□□□□ 0.53
SHKBP1-219ENST00000599575 PRPF38BQ5VTL8 546 aaKnown RBP18.36■□□□□ 0.53
SHKBP1-219ENST00000599575 IFNLR1Q8IU57 520 aaPredicted RBP18.36■□□□□ 0.53
SHKBP1-219ENST00000599575 RHPN2Q8IUC4 686 aa18.36■□□□□ 0.53
SHKBP1-219ENST00000599575 MRPS27Q92552 414 aaKnown RBP18.36■□□□□ 0.53
SHKBP1-219ENST00000599575 TMEM143Q96AN5 459 aa18.36■□□□□ 0.53
SHKBP1-219ENST00000599575 CCDC34Q96HJ3 373 aa18.36■□□□□ 0.53
SHKBP1-219ENST00000599575 IFT74Q96LB3 600 aa18.36■□□□□ 0.53
SHKBP1-219ENST00000599575 PLIN2Q99541 437 aa18.36■□□□□ 0.53
SHKBP1-219ENST00000599575 MTIF3Q9H2K0 278 aaKnown RBP18.36■□□□□ 0.53
SHKBP1-219ENST00000599575 TNMDQ9H2S6 317 aa18.36■□□□□ 0.53
SHKBP1-219ENST00000599575 HPSEQ9Y251 543 aa18.36■□□□□ 0.53
SHKBP1-219ENST00000599575 LOXHD1Q8IVV2 1947 aa18.35■□□□□ 0.53
SHKBP1-219ENST00000599575 GPR182O15218 404 aa18.35■□□□□ 0.53
SHKBP1-219ENST00000599575 NBNO60934 754 aa18.35■□□□□ 0.53
SHKBP1-219ENST00000599575 BAIAP3O94812 1187 aa18.35■□□□□ 0.53
SHKBP1-219ENST00000599575 SSBP05455 408 aaKnown RBP eCLIP18.35■□□□□ 0.53
SHKBP1-219ENST00000599575 ABCD1P33897 745 aa18.35■□□□□ 0.53
SHKBP1-219ENST00000599575 PHKA2P46019 1235 aa18.35■□□□□ 0.53
SHKBP1-219ENST00000599575 DRP2Q13474 957 aa18.35■□□□□ 0.53
SHKBP1-219ENST00000599575 MBTPS1Q14703 1052 aa18.35■□□□□ 0.53
SHKBP1-219ENST00000599575 KIZQ2M2Z5 673 aa18.35■□□□□ 0.53
SHKBP1-219ENST00000599575 PLEKHG4Q58EX7 1191 aa18.35■□□□□ 0.53
SHKBP1-219ENST00000599575 FAM102BQ5T8I3 360 aa18.35■□□□□ 0.53
SHKBP1-219ENST00000599575 SRGAP1Q7Z6B7 1085 aa18.35■□□□□ 0.53
SHKBP1-219ENST00000599575 NLRP7Q8WX94 980 aa18.35■□□□□ 0.53
SHKBP1-219ENST00000599575 SEPT8Q92599 483 aa18.35■□□□□ 0.53
SHKBP1-219ENST00000599575 SCLYQ96I15 445 aa18.35■□□□□ 0.53
SHKBP1-219ENST00000599575 CHAMP1Q96JM3 812 aa18.35■□□□□ 0.53
SHKBP1-219ENST00000599575 SCLT1Q96NL6 688 aa18.35■□□□□ 0.53
SHKBP1-219ENST00000599575 GBP4Q96PP9 640 aa18.35■□□□□ 0.53
SHKBP1-219ENST00000599575 FTHL17Q9BXU8 183 aa18.35■□□□□ 0.53
SHKBP1-219ENST00000599575 LARSQ9P2J5 1176 aaKnown RBP18.35■□□□□ 0.53
SHKBP1-219ENST00000599575 A0A1W2PPC1 479 aa18.34■□□□□ 0.53
SHKBP1-219ENST00000599575 POLR2DO15514 142 aaKnown RBP18.34■□□□□ 0.53
SHKBP1-219ENST00000599575 MYL1P05976 194 aa18.34■□□□□ 0.53
SHKBP1-219ENST00000599575 SLFN14P0C7P3 912 aa18.34■□□□□ 0.53
SHKBP1-219ENST00000599575 DARSP14868 501 aaKnown RBP18.34■□□□□ 0.53
SHKBP1-219ENST00000599575 PFKFB1P16118 471 aa18.34■□□□□ 0.53
SHKBP1-219ENST00000599575 NAMPTP43490 491 aa18.34■□□□□ 0.53
SHKBP1-219ENST00000599575 MDM2Q00987 491 aaPredicted RBP18.34■□□□□ 0.53
SHKBP1-219ENST00000599575 MCM6Q14566 821 aa18.34■□□□□ 0.53
SHKBP1-219ENST00000599575 LPIN1Q14693 890 aa18.34■□□□□ 0.53
SHKBP1-219ENST00000599575 CNNM4Q6P4Q7 775 aa18.34■□□□□ 0.53
SHKBP1-219ENST00000599575 CNKSR3Q6P9H4 555 aa18.34■□□□□ 0.53
SHKBP1-219ENST00000599575 GPBP1Q86WP2 473 aa18.34■□□□□ 0.53
SHKBP1-219ENST00000599575 PDILTQ8N807 584 aa18.34■□□□□ 0.53
SHKBP1-219ENST00000599575 SLC17A8Q8NDX2 589 aa18.34■□□□□ 0.53
SHKBP1-219ENST00000599575 NTPCRQ9BSD7 190 aaKnown RBP18.34■□□□□ 0.53
SHKBP1-219ENST00000599575 RUSC1Q9BVN2 902 aa18.34■□□□□ 0.53
SHKBP1-219ENST00000599575 IFIH1Q9BYX4 1025 aaKnown RBP18.34■□□□□ 0.53
SHKBP1-219ENST00000599575 POLR3FQ9H1D9 316 aaPredicted RBP18.34■□□□□ 0.53
SHKBP1-219ENST00000599575 C2orf40Q9H1Z8 148 aa18.34■□□□□ 0.53
SHKBP1-219ENST00000599575 GDPD2Q9HCC8 539 aa18.34■□□□□ 0.53
SHKBP1-219ENST00000599575 KBTBD4Q9NVX7 518 aa18.34■□□□□ 0.53
SHKBP1-219ENST00000599575 A0A087X0B3 334 aa18.33■□□□□ 0.52
SHKBP1-219ENST00000599575 ABHD14A-ACY1A0A1B0GW23 586 aa18.33■□□□□ 0.52
SHKBP1-219ENST00000599575 H0YCG3 227 aa18.33■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms