RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 CCDC26Q8TAB7 109 aa11.8□□□□□ -0.52
VPS4B-206ENST00000591475 UBLCP1Q8WVY7 318 aaPredicted RBP11.8□□□□□ -0.52
VPS4B-206ENST00000591475 CYFIP2Q96F07 1278 aa11.8□□□□□ -0.52
VPS4B-206ENST00000591475 NCAPGQ9BPX3 1015 aa11.8□□□□□ -0.52
VPS4B-206ENST00000591475 DDX47Q9H0S4 455 aaKnown RBP11.8□□□□□ -0.52
VPS4B-206ENST00000591475 GLT8D2Q9H1C3 349 aa11.8□□□□□ -0.52
VPS4B-206ENST00000591475 GOLPH3Q9H4A6 298 aa11.8□□□□□ -0.52
VPS4B-206ENST00000591475 GEMIN8Q9NWZ8 242 aaKnown RBP11.8□□□□□ -0.52
VPS4B-206ENST00000591475 SUCLA2Q9P2R7 463 aaPredicted RBP11.8□□□□□ -0.52
VPS4B-206ENST00000591475 HERC5Q9UII4 1024 aaKnown RBP11.8□□□□□ -0.52
VPS4B-206ENST00000591475 FBXL5Q9UKA1 691 aa11.8□□□□□ -0.52
VPS4B-206ENST00000591475 INTUQ9ULD6 942 aa11.8□□□□□ -0.52
VPS4B-206ENST00000591475 ZBTB5O15062 677 aa11.79□□□□□ -0.52
VPS4B-206ENST00000591475 ZBTB48P10074 688 aaPredicted RBP11.79□□□□□ -0.52
VPS4B-206ENST00000591475 PPP2R2AP63151 447 aa11.79□□□□□ -0.52
VPS4B-206ENST00000591475 KNOP1Q1ED39 458 aaKnown RBP11.79□□□□□ -0.52
VPS4B-206ENST00000591475 ODF2Q5BJF6 829 aa11.79□□□□□ -0.52
VPS4B-206ENST00000591475 ARSHQ5FYA8 562 aa11.79□□□□□ -0.52
VPS4B-206ENST00000591475 GPATCH4Q5T3I0 446 aaKnown RBP11.79□□□□□ -0.52
VPS4B-206ENST00000591475 C6orf89Q6UWU4 347 aa11.79□□□□□ -0.52
VPS4B-206ENST00000591475 CCDC17Q96LX7 622 aa11.79□□□□□ -0.52
VPS4B-206ENST00000591475 NEUROG2Q9H2A3 272 aa11.79□□□□□ -0.52
VPS4B-206ENST00000591475 KCNMB3Q9NPA1 279 aa11.79□□□□□ -0.52
VPS4B-206ENST00000591475 BCCIPQ9P287 314 aaKnown RBP eCLIP11.79□□□□□ -0.52
VPS4B-206ENST00000591475 SLC12A6Q9UHW9 1150 aa11.79□□□□□ -0.52
VPS4B-206ENST00000591475 HACL1Q9UJ83 578 aa11.79□□□□□ -0.52
VPS4B-206ENST00000591475 NENFQ9UMX5 172 aa11.79□□□□□ -0.52
VPS4B-206ENST00000591475 STXBP5LQ9Y2K9 1186 aa11.79□□□□□ -0.52
VPS4B-206ENST00000591475 PDXKO00764 312 aa11.79□□□□□ -0.52
VPS4B-206ENST00000591475 MED24O75448 989 aa11.79□□□□□ -0.52
VPS4B-206ENST00000591475 SHMT1P34896 483 aa11.79□□□□□ -0.52
VPS4B-206ENST00000591475 NPEPPSP55786 919 aa11.79□□□□□ -0.52
VPS4B-206ENST00000591475 EPHA7Q15375 998 aa11.79□□□□□ -0.52
VPS4B-206ENST00000591475 TTBK2Q6IQ55 1244 aa11.79□□□□□ -0.52
VPS4B-206ENST00000591475 TATDN1Q6P1N9 297 aa11.79□□□□□ -0.52
VPS4B-206ENST00000591475 CCDC121Q6ZUS5 278 aa11.79□□□□□ -0.52
VPS4B-206ENST00000591475 SLFN12Q8IYM2 578 aa11.79□□□□□ -0.52
VPS4B-206ENST00000591475 RBM46Q8TBY0 533 aaKnown RBP11.79□□□□□ -0.52
VPS4B-206ENST00000591475 MYCBPQ99417 103 aaPredicted RBP11.79□□□□□ -0.52
VPS4B-206ENST00000591475 ACTR5Q9H9F9 607 aaPredicted RBP11.79□□□□□ -0.52
VPS4B-206ENST00000591475 METTL14Q9HCE5 456 aaKnown RBP11.79□□□□□ -0.52
VPS4B-206ENST00000591475 FAM114A2Q9NRY5 505 aa11.79□□□□□ -0.52
VPS4B-206ENST00000591475 ADARB2Q9NS39 739 aaKnown RBP11.79□□□□□ -0.52
VPS4B-206ENST00000591475 POTEFA5A3E0 1075 aa11.78□□□□□ -0.52
VPS4B-206ENST00000591475 USP17L10C9JJH3 530 aa11.78□□□□□ -0.52
VPS4B-206ENST00000591475 DAPK3O43293 454 aa11.78□□□□□ -0.52
VPS4B-206ENST00000591475 TRAPPC3O43617 180 aa11.78□□□□□ -0.52
VPS4B-206ENST00000591475 POTEIP0CG38 1075 aa11.78□□□□□ -0.52
VPS4B-206ENST00000591475 FERP16591 822 aa11.78□□□□□ -0.52
VPS4B-206ENST00000591475 RPL13P26373 211 aaKnown RBP11.78□□□□□ -0.52
VPS4B-206ENST00000591475 CASP5P51878 434 aa11.78□□□□□ -0.52
VPS4B-206ENST00000591475 SMTNP53814 917 aa11.78□□□□□ -0.52
VPS4B-206ENST00000591475 JAM2P57087 298 aa11.78□□□□□ -0.52
VPS4B-206ENST00000591475 PDE4CQ08493 712 aa11.78□□□□□ -0.52
VPS4B-206ENST00000591475 GIT2Q14161 759 aa11.78□□□□□ -0.52
VPS4B-206ENST00000591475 RASA3Q14644 834 aa11.78□□□□□ -0.52
VPS4B-206ENST00000591475 PTPROQ16827 1216 aa11.78□□□□□ -0.52
VPS4B-206ENST00000591475 DCAF17Q5H9S7 520 aaPredicted RBP11.78□□□□□ -0.52
VPS4B-206ENST00000591475 POTEGQ6S5H5 508 aa11.78□□□□□ -0.52
VPS4B-206ENST00000591475 POTEEQ6S8J3 1075 aa11.78□□□□□ -0.52
VPS4B-206ENST00000591475 EPM2AIP1Q7L775 607 aaPredicted RBP11.78□□□□□ -0.52
VPS4B-206ENST00000591475 DAAM2Q86T65 1068 aa11.78□□□□□ -0.52
VPS4B-206ENST00000591475 CLEC10AQ8IUN9 316 aa11.78□□□□□ -0.52
VPS4B-206ENST00000591475 ERMNQ8TAM6 284 aa11.78□□□□□ -0.52
VPS4B-206ENST00000591475 L3MBTL3Q96JM7 780 aaPredicted RBP11.78□□□□□ -0.52
VPS4B-206ENST00000591475 UIMC1Q96RL1 719 aa11.78□□□□□ -0.52
VPS4B-206ENST00000591475 TMEM39BQ9GZU3 492 aa11.78□□□□□ -0.52
VPS4B-206ENST00000591475 DNAJC18Q9H819 358 aa11.78□□□□□ -0.52
VPS4B-206ENST00000591475 AMACRQ9UHK6 382 aa11.78□□□□□ -0.52
VPS4B-206ENST00000591475 GREB1LQ9C091 1923 aaPredicted RBP11.78□□□□□ -0.52
VPS4B-206ENST00000591475 CYP3A7-CYP3A51PA0A087WV96 503 aa11.77□□□□□ -0.52
VPS4B-206ENST00000591475 GOLGA6L7A0A1B0GV03 622 aa11.77□□□□□ -0.52
VPS4B-206ENST00000591475 GLTPD2A6NH11 291 aa11.77□□□□□ -0.52
VPS4B-206ENST00000591475 SLC16A3O15427 465 aaKnown RBP11.77□□□□□ -0.52
VPS4B-206ENST00000591475 TBC1D12O60347 775 aa11.77□□□□□ -0.52
VPS4B-206ENST00000591475 PAEPP09466 180 aa11.77□□□□□ -0.52
VPS4B-206ENST00000591475 CYP3A7P24462 503 aa11.77□□□□□ -0.52
VPS4B-206ENST00000591475 SLC16A2P36021 539 aa11.77□□□□□ -0.52
VPS4B-206ENST00000591475 STAT3P40763 770 aa11.77□□□□□ -0.52
VPS4B-206ENST00000591475 CDR1P51861 262 aa11.77□□□□□ -0.52
VPS4B-206ENST00000591475 TMC3Q7Z5M5 1100 aa11.77□□□□□ -0.52
VPS4B-206ENST00000591475 NT5DC3Q86UY8 548 aa11.77□□□□□ -0.52
VPS4B-206ENST00000591475 SFR1Q86XK3 245 aa11.77□□□□□ -0.52
VPS4B-206ENST00000591475 APOBEC3FQ8IUX4 373 aaKnown RBP11.77□□□□□ -0.52
VPS4B-206ENST00000591475 CCDC13Q8IYE1 715 aa11.77□□□□□ -0.52
VPS4B-206ENST00000591475 PROCA1Q8NCQ7 364 aaPredicted RBP11.77□□□□□ -0.52
VPS4B-206ENST00000591475 TRPM4Q8TD43 1214 aa11.77□□□□□ -0.52
VPS4B-206ENST00000591475 SEC14L1Q92503 715 aa11.77□□□□□ -0.52
VPS4B-206ENST00000591475 MBOAT7Q96N66 472 aa11.77□□□□□ -0.52
VPS4B-206ENST00000591475 ANO3Q9BYT9 981 aa11.77□□□□□ -0.52
VPS4B-206ENST00000591475 SIX2Q9NPC8 291 aa11.77□□□□□ -0.52
VPS4B-206ENST00000591475 A1CFQ9NQ94 594 aaKnown RBP11.77□□□□□ -0.52
VPS4B-206ENST00000591475 TYW1Q9NV66 732 aaKnown RBP11.77□□□□□ -0.52
VPS4B-206ENST00000591475 DDX20Q9UHI6 824 aaKnown RBP11.77□□□□□ -0.52
VPS4B-206ENST00000591475 AMFRQ9UKV5 643 aa11.77□□□□□ -0.52
VPS4B-206ENST00000591475 UTP11Q9Y3A2 253 aaKnown RBP11.77□□□□□ -0.52
VPS4B-206ENST00000591475 TTI1O43156 1089 aa11.77□□□□□ -0.53
VPS4B-206ENST00000591475 GFPT2O94808 682 aa11.77□□□□□ -0.53
VPS4B-206ENST00000591475 NR3C1P04150 777 aa11.77□□□□□ -0.53
VPS4B-206ENST00000591475 ITGA4P13612 1032 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms