RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 TRAPPC12Q8WVT3 735 aa12.66□□□□□ -0.38
SMAD4-211ENST00000590499 ZBTB10Q96DT7 871 aa12.66□□□□□ -0.38
SMAD4-211ENST00000590499 TBC1D32Q96NH3 1257 aa12.66□□□□□ -0.38
SMAD4-211ENST00000590499 SEMA6BQ9H3T3 888 aa12.66□□□□□ -0.38
SMAD4-211ENST00000590499 UNC45AQ9H3U1 944 aa12.66□□□□□ -0.38
SMAD4-211ENST00000590499 KCNMB3Q9NPA1 279 aa12.66□□□□□ -0.38
SMAD4-211ENST00000590499 ZNF302Q9NR11 478 aa12.66□□□□□ -0.38
SMAD4-211ENST00000590499 PCDHA10Q9Y5I2 948 aa12.66□□□□□ -0.38
SMAD4-211ENST00000590499 UNC80Q8N2C7 3258 aa12.66□□□□□ -0.38
SMAD4-211ENST00000590499 A0A0C4DFX4 3053 aa12.65□□□□□ -0.38
SMAD4-211ENST00000590499 FAM181BA6NEQ2 426 aa12.65□□□□□ -0.38
SMAD4-211ENST00000590499 ZBBXA8MT70 800 aa12.65□□□□□ -0.38
SMAD4-211ENST00000590499 WDR64B1ANS9 1081 aa12.65□□□□□ -0.38
SMAD4-211ENST00000590499 HBP1O60381 514 aa12.65□□□□□ -0.38
SMAD4-211ENST00000590499 GAS7O60861 476 aa12.65□□□□□ -0.38
SMAD4-211ENST00000590499 CHRNA1P02708 482 aa12.65□□□□□ -0.38
SMAD4-211ENST00000590499 PSAPP07602 524 aa12.65□□□□□ -0.38
SMAD4-211ENST00000590499 CTSHP09668 335 aa12.65□□□□□ -0.38
SMAD4-211ENST00000590499 GCFC2P16383 781 aaKnown RBP12.65□□□□□ -0.38
SMAD4-211ENST00000590499 ATP2A2P16615 1042 aaKnown RBP12.65□□□□□ -0.38
SMAD4-211ENST00000590499 JUNDP17535 347 aa12.65□□□□□ -0.38
SMAD4-211ENST00000590499 WDR5P61964 334 aaKnown RBP12.65□□□□□ -0.38
SMAD4-211ENST00000590499 IGBP1P78318 339 aa12.65□□□□□ -0.38
SMAD4-211ENST00000590499 RAB30Q15771 203 aa12.65□□□□□ -0.38
SMAD4-211ENST00000590499 LETM2Q2VYF4 491 aa12.65□□□□□ -0.38
SMAD4-211ENST00000590499 PLEKHG4Q58EX7 1191 aa12.65□□□□□ -0.38
SMAD4-211ENST00000590499 PDXDC2PQ6P474 469 aa12.65□□□□□ -0.38
SMAD4-211ENST00000590499 IL27Q8NEV9 243 aa12.65□□□□□ -0.38
SMAD4-211ENST00000590499 PHOSPHO2Q8TCD6 241 aa12.65□□□□□ -0.38
SMAD4-211ENST00000590499 TNPO1Q92973 898 aaKnown RBP12.65□□□□□ -0.38
SMAD4-211ENST00000590499 TIFAQ96CG3 184 aa12.65□□□□□ -0.38
SMAD4-211ENST00000590499 SLC9A7Q96T83 725 aa12.65□□□□□ -0.38
SMAD4-211ENST00000590499 TEKT3Q9BXF9 490 aa12.65□□□□□ -0.38
SMAD4-211ENST00000590499 DISC1Q9NRI5 854 aa12.65□□□□□ -0.38
SMAD4-211ENST00000590499 DDX25Q9UHL0 483 aaKnown RBP12.65□□□□□ -0.38
SMAD4-211ENST00000590499 YBX2Q9Y2T7 364 aaKnown RBP12.65□□□□□ -0.38
SMAD4-211ENST00000590499 PCDHA2Q9Y5H9 948 aa12.65□□□□□ -0.38
SMAD4-211ENST00000590499 COL1A2P08123 1366 aa12.65□□□□□ -0.38
SMAD4-211ENST00000590499 ABHD14A-ACY1A0A1B0GW23 586 aa12.64□□□□□ -0.39
SMAD4-211ENST00000590499 BTBD18B2RXH4 712 aa12.64□□□□□ -0.39
SMAD4-211ENST00000590499 ZNF862O60290 1169 aa12.64□□□□□ -0.39
SMAD4-211ENST00000590499 SFNP31947 248 aa12.64□□□□□ -0.39
SMAD4-211ENST00000590499 JAK3P52333 1124 aa12.64□□□□□ -0.39
SMAD4-211ENST00000590499 RABGGTBP53611 331 aa12.64□□□□□ -0.39
SMAD4-211ENST00000590499 UGCGQ16739 394 aa12.64□□□□□ -0.39
SMAD4-211ENST00000590499 MTHFD1LQ6UB35 978 aa12.64□□□□□ -0.39
SMAD4-211ENST00000590499 DIS3L2Q8IYB7 885 aaKnown RBP12.64□□□□□ -0.39
SMAD4-211ENST00000590499 DBF4BQ8NFT6 615 aa12.64□□□□□ -0.39
SMAD4-211ENST00000590499 RDM1Q8NG50 284 aa12.64□□□□□ -0.39
SMAD4-211ENST00000590499 DNAJB3Q8WWF6 145 aa12.64□□□□□ -0.39
SMAD4-211ENST00000590499 HAS1Q92839 578 aa12.64□□□□□ -0.39
SMAD4-211ENST00000590499 FAM161BQ96MY7 647 aa12.64□□□□□ -0.39
SMAD4-211ENST00000590499 UPF2Q9HAU5 1272 aaKnown RBP12.64□□□□□ -0.39
SMAD4-211ENST00000590499 BRMS1Q9HCU9 246 aa12.64□□□□□ -0.39
SMAD4-211ENST00000590499 GABBR1Q9UBS5 961 aa12.64□□□□□ -0.39
SMAD4-211ENST00000590499 TCEAL9Q9UHQ7 104 aa12.64□□□□□ -0.39
SMAD4-211ENST00000590499 VAV3Q9UKW4 847 aa12.64□□□□□ -0.39
SMAD4-211ENST00000590499 PCDHA11Q9Y5I1 949 aa12.64□□□□□ -0.39
SMAD4-211ENST00000590499 REV3LO60673 3130 aa12.64□□□□□ -0.39
SMAD4-211ENST00000590499 TBX3O15119 743 aa12.63□□□□□ -0.39
SMAD4-211ENST00000590499 C22orf31O95567 290 aa12.63□□□□□ -0.39
SMAD4-211ENST00000590499 RPLP2P05387 115 aaKnown RBP12.63□□□□□ -0.39
SMAD4-211ENST00000590499 DEFB103AP81534 67 aa12.63□□□□□ -0.39
SMAD4-211ENST00000590499 MRPS6P82932 125 aaKnown RBP12.63□□□□□ -0.39
SMAD4-211ENST00000590499 HMGN5P82970 282 aaKnown RBP12.63□□□□□ -0.39
SMAD4-211ENST00000590499 ZNF484Q5JVG2 852 aa12.63□□□□□ -0.39
SMAD4-211ENST00000590499 HERC6Q8IVU3 1022 aa12.63□□□□□ -0.39
SMAD4-211ENST00000590499 FAM20AQ96MK3 541 aa12.63□□□□□ -0.39
SMAD4-211ENST00000590499 NAP1L4Q99733 375 aaKnown RBP12.63□□□□□ -0.39
SMAD4-211ENST00000590499 STXBP5LQ9Y2K9 1186 aa12.63□□□□□ -0.39
SMAD4-211ENST00000590499 SAMM50Q9Y512 469 aa12.63□□□□□ -0.39
SMAD4-211ENST00000590499 SMIM35A0A1B0GVV1 85 aa12.62□□□□□ -0.39
SMAD4-211ENST00000590499 EML1O00423 815 aa12.62□□□□□ -0.39
SMAD4-211ENST00000590499 CHMP2AO43633 222 aa12.62□□□□□ -0.39
SMAD4-211ENST00000590499 CCNT1O60563 726 aaKnown RBP12.62□□□□□ -0.39
SMAD4-211ENST00000590499 EFCAB14O75071 495 aa12.62□□□□□ -0.39
SMAD4-211ENST00000590499 STBD1O95210 358 aa12.62□□□□□ -0.39
SMAD4-211ENST00000590499 MYOGP15173 224 aa12.62□□□□□ -0.39
SMAD4-211ENST00000590499 KLRC1P26715 233 aa12.62□□□□□ -0.39
SMAD4-211ENST00000590499 GMPRP36959 345 aa12.62□□□□□ -0.39
SMAD4-211ENST00000590499 KCNJ6P48051 423 aa12.62□□□□□ -0.39
SMAD4-211ENST00000590499 PRKCEQ02156 737 aa12.62□□□□□ -0.39
SMAD4-211ENST00000590499 PPP2R5CQ13362 524 aa12.62□□□□□ -0.39
SMAD4-211ENST00000590499 TRIM29Q14134 588 aa12.62□□□□□ -0.39
SMAD4-211ENST00000590499 IKBKEQ14164 716 aa12.62□□□□□ -0.39
SMAD4-211ENST00000590499 LPIN1Q14693 890 aa12.62□□□□□ -0.39
SMAD4-211ENST00000590499 GRIN2CQ14957 1233 aa12.62□□□□□ -0.39
SMAD4-211ENST00000590499 FBXO47Q5MNV8 452 aa12.62□□□□□ -0.39
SMAD4-211ENST00000590499 MIER3Q7Z3K6 550 aa12.62□□□□□ -0.39
SMAD4-211ENST00000590499 RSPH3Q86UC2 560 aa12.62□□□□□ -0.39
SMAD4-211ENST00000590499 FBXO18Q8NFZ0 1043 aa12.62□□□□□ -0.39
SMAD4-211ENST00000590499 SEPT8Q92599 483 aa12.62□□□□□ -0.39
SMAD4-211ENST00000590499 C8orf76Q96K31 380 aa12.62□□□□□ -0.39
SMAD4-211ENST00000590499 FAM167AQ96KS9 214 aa12.62□□□□□ -0.39
SMAD4-211ENST00000590499 CDX2Q99626 313 aaPredicted RBP12.62□□□□□ -0.39
SMAD4-211ENST00000590499 BACH2Q9BYV9 841 aa12.62□□□□□ -0.39
SMAD4-211ENST00000590499 FAM49AQ9H0Q0 323 aaPredicted RBP12.62□□□□□ -0.39
SMAD4-211ENST00000590499 NKX2-4Q9H2Z4 354 aa12.62□□□□□ -0.39
SMAD4-211ENST00000590499 ZNF576Q9H609 170 aa12.62□□□□□ -0.39
SMAD4-211ENST00000590499 SLC24A3Q9HC58 644 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms