RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 SUCLA2Q9P2R7 463 aaPredicted RBP13.86□□□□□ -0.19
SS18-225ENST00000585121 KIF3AQ9Y496 699 aa13.86□□□□□ -0.19
SS18-225ENST00000585121 SPTBN5Q9NRC6 3674 aaKnown RBP13.86□□□□□ -0.19
SS18-225ENST00000585121 IGKV6-21A0A0C4DH24 114 aa13.85□□□□□ -0.19
SS18-225ENST00000585121 TMEM150BA6NC51 233 aa13.85□□□□□ -0.19
SS18-225ENST00000585121 MGEA5O60502 916 aa13.85□□□□□ -0.19
SS18-225ENST00000585121 STBD1O95210 358 aa13.85□□□□□ -0.19
SS18-225ENST00000585121 DARSP14868 501 aaKnown RBP13.85□□□□□ -0.19
SS18-225ENST00000585121 ATP2B1P20020 1258 aa13.85□□□□□ -0.19
SS18-225ENST00000585121 POLGP54098 1239 aaPredicted RBP13.85□□□□□ -0.19
SS18-225ENST00000585121 ZNF410Q86VK4 478 aa13.85□□□□□ -0.19
SS18-225ENST00000585121 TPH2Q8IWU9 490 aa13.85□□□□□ -0.19
SS18-225ENST00000585121 DYDC2Q96IM9 177 aa13.85□□□□□ -0.19
SS18-225ENST00000585121 ZNF668Q96K58 619 aaPredicted RBP13.85□□□□□ -0.19
SS18-225ENST00000585121 SH2D3AQ9BRG2 576 aa13.85□□□□□ -0.19
SS18-225ENST00000585121 FOXP1Q9H334 677 aaPredicted RBP13.85□□□□□ -0.19
SS18-225ENST00000585121 TTC3P53804 2025 aa13.85□□□□□ -0.19
SS18-225ENST00000585121 COL4A6Q14031 1691 aa13.85□□□□□ -0.19
SS18-225ENST00000585121 C9IYK1 514 aa13.85□□□□□ -0.19
SS18-225ENST00000585121 C5orf67F2Z3F1 127 aa13.85□□□□□ -0.19
SS18-225ENST00000585121 HOXA2O43364 376 aa13.85□□□□□ -0.19
SS18-225ENST00000585121 SFPQP23246 707 aaKnown RBP eCLIP13.85□□□□□ -0.19
SS18-225ENST00000585121 YWHABP31946 246 aaKnown RBP13.85□□□□□ -0.19
SS18-225ENST00000585121 RFC5P40937 340 aa13.85□□□□□ -0.19
SS18-225ENST00000585121 TXKP42681 527 aa13.85□□□□□ -0.19
SS18-225ENST00000585121 NAALADL2Q58DX5 795 aa13.85□□□□□ -0.19
SS18-225ENST00000585121 SPOUT1Q5T280 376 aaKnown RBP13.85□□□□□ -0.19
SS18-225ENST00000585121 PLA2G4FQ68DD2 849 aa13.85□□□□□ -0.19
SS18-225ENST00000585121 RHPN2Q8IUC4 686 aa13.85□□□□□ -0.19
SS18-225ENST00000585121 CRIPAKQ8N1N5 446 aa13.85□□□□□ -0.19
SS18-225ENST00000585121 FBXO18Q8NFZ0 1043 aa13.85□□□□□ -0.19
SS18-225ENST00000585121 NEK9Q8TD19 979 aa13.85□□□□□ -0.19
SS18-225ENST00000585121 CCDC43Q96MW1 224 aaKnown RBP13.85□□□□□ -0.19
SS18-225ENST00000585121 CEP89Q96ST8 783 aa13.85□□□□□ -0.19
SS18-225ENST00000585121 EIF2AK1Q9BQI3 630 aaKnown RBP13.85□□□□□ -0.19
SS18-225ENST00000585121 LMAN2LQ9H0V9 348 aa13.85□□□□□ -0.19
SS18-225ENST00000585121 ELAC1Q9H777 363 aaKnown RBP13.85□□□□□ -0.19
SS18-225ENST00000585121 TTC12Q9H892 705 aaPredicted RBP13.85□□□□□ -0.19
SS18-225ENST00000585121 TMEM161AQ9NX61 479 aa13.85□□□□□ -0.19
SS18-225ENST00000585121 DACT1Q9NYF0 836 aa13.85□□□□□ -0.19
SS18-225ENST00000585121 RGL1Q9NZL6 768 aa13.85□□□□□ -0.19
SS18-225ENST00000585121 EVPLQ92817 2033 aa13.84□□□□□ -0.19
SS18-225ENST00000585121 SIP14410 1827 aa13.84□□□□□ -0.19
SS18-225ENST00000585121 TBKBP1A7MCY6 615 aa13.84□□□□□ -0.19
SS18-225ENST00000585121 GAS2O43903 313 aaKnown RBP13.84□□□□□ -0.19
SS18-225ENST00000585121 MCM7P33993 719 aa13.84□□□□□ -0.19
SS18-225ENST00000585121 NPEPPSP55786 919 aa13.84□□□□□ -0.19
SS18-225ENST00000585121 FAM189BP81408 668 aa13.84□□□□□ -0.19
SS18-225ENST00000585121 CYP4A11Q02928 519 aa13.84□□□□□ -0.19
SS18-225ENST00000585121 SPIRE1Q08AE8 756 aa13.84□□□□□ -0.19
SS18-225ENST00000585121 ORC2Q13416 577 aaPredicted RBP13.84□□□□□ -0.19
SS18-225ENST00000585121 CTTNQ14247 550 aaKnown RBP13.84□□□□□ -0.19
SS18-225ENST00000585121 DSC3Q14574 896 aa13.84□□□□□ -0.19
SS18-225ENST00000585121 XKR9Q5GH70 373 aa13.84□□□□□ -0.19
SS18-225ENST00000585121 TCP11Q8WWU5 503 aa13.84□□□□□ -0.19
SS18-225ENST00000585121 CHST12Q9NRB3 414 aa13.84□□□□□ -0.19
SS18-225ENST00000585121 AAASQ9NRG9 546 aa13.84□□□□□ -0.19
SS18-225ENST00000585121 NOL7Q9UMY1 257 aaKnown RBP13.84□□□□□ -0.19
SS18-225ENST00000585121 MRPL42Q9Y6G3 142 aaKnown RBP13.84□□□□□ -0.19
SS18-225ENST00000585121 TTC28Q96AY4 2481 aa13.83□□□□□ -0.19
SS18-225ENST00000585121 VCANP13611 3396 aa13.83□□□□□ -0.2
SS18-225ENST00000585121 A0A087WZ62 844 aa13.83□□□□□ -0.2
SS18-225ENST00000585121 SLITRK3O94933 977 aa13.83□□□□□ -0.2
SS18-225ENST00000585121 TFF2Q03403 129 aa13.83□□□□□ -0.2
SS18-225ENST00000585121 DRP2Q13474 957 aa13.83□□□□□ -0.2
SS18-225ENST00000585121 ABI1Q8IZP0 508 aa13.83□□□□□ -0.2
SS18-225ENST00000585121 PSPC1Q8WXF1 523 aaKnown RBP13.83□□□□□ -0.2
SS18-225ENST00000585121 P2RX5Q93086 422 aa13.83□□□□□ -0.2
SS18-225ENST00000585121 NLRP4Q96MN2 994 aa13.83□□□□□ -0.2
SS18-225ENST00000585121 MTMR9Q96QG7 549 aa13.83□□□□□ -0.2
SS18-225ENST00000585121 FDXACB1Q9BRP7 624 aaPredicted RBP13.83□□□□□ -0.2
SS18-225ENST00000585121 NSUN3Q9H649 340 aaKnown RBP13.83□□□□□ -0.2
SS18-225ENST00000585121 PCDHB12Q9Y5F1 795 aa13.83□□□□□ -0.2
SS18-225ENST00000585121 ASAP2O43150 1006 aa13.82□□□□□ -0.2
SS18-225ENST00000585121 FGFR4P22455 802 aa13.82□□□□□ -0.2
SS18-225ENST00000585121 TRAPPC10P48553 1259 aa13.82□□□□□ -0.2
SS18-225ENST00000585121 MCM2P49736 904 aa13.82□□□□□ -0.2
SS18-225ENST00000585121 GATMP50440 423 aa13.82□□□□□ -0.2
SS18-225ENST00000585121 FAM102BQ5T8I3 360 aa13.82□□□□□ -0.2
SS18-225ENST00000585121 NOSTRINQ8IVI9 506 aa13.82□□□□□ -0.2
SS18-225ENST00000585121 PPP2R3CQ969Q6 453 aa13.82□□□□□ -0.2
SS18-225ENST00000585121 DHX33Q9H6R0 707 aaKnown RBP13.82□□□□□ -0.2
SS18-225ENST00000585121 WRAP73Q9P2S5 460 aaPredicted RBP13.82□□□□□ -0.2
SS18-225ENST00000585121 COL4A3BPQ9Y5P4 624 aa13.82□□□□□ -0.2
SS18-225ENST00000585121 NCK2O43639 380 aa13.81□□□□□ -0.2
SS18-225ENST00000585121 CSDE1O75534 798 aaKnown RBP13.81□□□□□ -0.2
SS18-225ENST00000585121 LYPLA2O95372 231 aa13.81□□□□□ -0.2
SS18-225ENST00000585121 EOMESO95936 686 aa13.81□□□□□ -0.2
SS18-225ENST00000585121 SKIP12755 728 aa13.81□□□□□ -0.2
SS18-225ENST00000585121 EMC2Q15006 297 aa13.81□□□□□ -0.2
SS18-225ENST00000585121 ZNF174Q15697 407 aa13.81□□□□□ -0.2
SS18-225ENST00000585121 CSPP1Q1MSJ5 1256 aa13.81□□□□□ -0.2
SS18-225ENST00000585121 TTC38Q5R3I4 469 aa13.81□□□□□ -0.2
SS18-225ENST00000585121 CATSPER4Q7RTX7 472 aa13.81□□□□□ -0.2
SS18-225ENST00000585121 ECHDC2Q86YB7 292 aa13.81□□□□□ -0.2
SS18-225ENST00000585121 ZNF579Q8NAF0 562 aaKnown RBP13.81□□□□□ -0.2
SS18-225ENST00000585121 RNF169Q8NCN4 708 aa13.81□□□□□ -0.2
SS18-225ENST00000585121 ERMNQ8TAM6 284 aa13.81□□□□□ -0.2
SS18-225ENST00000585121 ADAMTS19Q8TE59 1207 aa13.81□□□□□ -0.2
SS18-225ENST00000585121 PRPF31Q8WWY3 499 aaKnown RBP13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms