RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 XPO5Q9HAV4 1204 aaKnown RBP eCLIP2.39□□□□□ -2.03
SMCHD1-211ENST00000584897 AASDHPPTQ9NRN7 309 aa2.39□□□□□ -2.03
SMCHD1-211ENST00000584897 TMEM260Q9NX78 707 aa2.39□□□□□ -2.03
SMCHD1-211ENST00000584897 PLAAQ9Y263 795 aa2.39□□□□□ -2.03
SMCHD1-211ENST00000584897 SOS1Q07889 1333 aaPredicted RBP2.39□□□□□ -2.03
SMCHD1-211ENST00000584897 USP6P35125 1406 aa2.39□□□□□ -2.03
SMCHD1-211ENST00000584897 CYR61O00622 381 aa2.39□□□□□ -2.03
SMCHD1-211ENST00000584897 PLATP00750 562 aa2.39□□□□□ -2.03
SMCHD1-211ENST00000584897 NBPF7P0C2Y1 421 aaPredicted RBP2.39□□□□□ -2.03
SMCHD1-211ENST00000584897 GIPRP48546 466 aa2.39□□□□□ -2.03
SMCHD1-211ENST00000584897 CASP7P55210 303 aa2.39□□□□□ -2.03
SMCHD1-211ENST00000584897 RASGRF1Q13972 1273 aa2.39□□□□□ -2.03
SMCHD1-211ENST00000584897 PLEKHN1Q494U1 663 aaPredicted RBP2.39□□□□□ -2.03
SMCHD1-211ENST00000584897 KIAA1211LQ6NV74 962 aa2.39□□□□□ -2.03
SMCHD1-211ENST00000584897 PPFIBP1Q86W92 1011 aa2.39□□□□□ -2.03
SMCHD1-211ENST00000584897 KRTAP19-1Q8IUB9 90 aa2.39□□□□□ -2.03
SMCHD1-211ENST00000584897 MFSD3Q96ES6 412 aa2.39□□□□□ -2.03
SMCHD1-211ENST00000584897 NAP1L4Q99733 375 aaKnown RBP2.39□□□□□ -2.03
SMCHD1-211ENST00000584897 PDGFDQ9GZP0 370 aaPredicted RBP2.39□□□□□ -2.03
SMCHD1-211ENST00000584897 GABBR1Q9UBS5 961 aa2.39□□□□□ -2.03
SMCHD1-211ENST00000584897 ZNF69Q9UC07 566 aa2.39□□□□□ -2.03
SMCHD1-211ENST00000584897 ZNF214Q9UL59 606 aaPredicted RBP2.39□□□□□ -2.03
SMCHD1-211ENST00000584897 PTCH2Q9Y6C5 1203 aa2.39□□□□□ -2.03
SMCHD1-211ENST00000584897 PASKQ96RG2 1323 aa2.39□□□□□ -2.03
SMCHD1-211ENST00000584897 ANKRD36BQ8N2N9 1353 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 OPA1O60313 960 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 NPTXRO95502 500 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 PRR5P85299 388 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 AMPD3Q01432 767 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 CYP4F3Q08477 520 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 ITKQ08881 620 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 HSP90AA2PQ14568 343 aaPredicted RBP2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 PLEKHG6Q3KR16 790 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 MRM1Q6IN84 353 aaKnown RBP2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 KSR2Q6VAB6 950 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 UNC5AQ6ZN44 842 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 UBE3DQ7Z6J8 389 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 ZBTB46Q86UZ6 589 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 WFDC3Q8IUB2 231 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 CELF2-AS1Q8N7Q2 184 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 TOE1Q96GM8 510 aaKnown RBP2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 SNX27Q96L92 541 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 MPHOSPH6Q99547 160 aaKnown RBP2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 TMPRSS5Q9H3S3 457 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 CYP26B1Q9NR63 512 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 SMPD4Q9NXE4 827 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 POGKQ9P215 609 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 POLR3KQ9Y2Y1 108 aaPredicted RBP2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 PCDHB4Q9Y5E5 795 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 KCPQ6ZWJ8 1503 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 N4BP2Q86UW6 1770 aaPredicted RBP2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 HGSO14964 777 aaPredicted RBP2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 CA12O43570 354 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 LRRN2O75325 713 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 ITGB3P05106 788 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 RPL13P26373 211 aaKnown RBP2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 LTBRP36941 435 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 ERVFC1P60507 584 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 MAP2K1Q02750 393 aaPredicted RBP2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 SQSTM1Q13501 440 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 PPP2R5DQ14738 602 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 FAM47CQ5HY64 1035 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 C6orf15Q6UXA7 325 aaPredicted RBP2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 MPRIPQ6WCQ1 1025 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 UBE2R2Q712K3 238 aaPredicted RBP2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 DDX46Q7L014 1031 aaKnown RBP2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 SAPCD2Q86UD0 394 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 NIM1KQ8IY84 436 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 AHI1Q8N157 1196 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 BVESQ8NE79 360 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 FBXO27Q8NI29 283 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 TMEM169Q96HH4 297 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 JMJD8Q96S16 334 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 ORAI2Q96SN7 254 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 ZNF281Q9Y2X9 895 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 IRS2Q9Y4H2 1338 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 NRXN2Q9P2S2 1712 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 SRCAPQ6ZRS2 3230 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 COL5A2P05997 1499 aaPredicted RBP2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 BCORQ6W2J9 1755 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 KRTAP4-8A0A0G2JLE6 195 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 GOLGA6CA6NDK9 693 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 GOLGA6BA6NDN3 693 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 RASSF10A6NK89 507 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 EIF3JO75822 258 aaKnown RBP2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 UBOX5O94941 541 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 ENO2P09104 434 aaPredicted RBP2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 GOLGA6DP0CG33 693 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 GJA4P35212 333 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 EVA1CP58658 441 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 MAP3K12Q12852 859 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 VASNQ6EMK4 673 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 RPTNQ6XPR3 784 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 LCNL1Q6ZST4 164 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 TMC3Q7Z5M5 1100 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 GIMAP8Q8ND71 665 aaPredicted RBP2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 SGSM3Q96HU1 749 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 ZNF341Q9BYN7 854 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 NOL6Q9H6R4 1146 aaKnown RBP2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 CAAP1Q9H8G2 361 aa2.38□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms