RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 CCDC194A0A1B0GVG4 234 aa23.04■■□□□ 1.28
SHMT1-209ENST00000582653 TBKBP1A7MCY6 615 aa23.04■■□□□ 1.28
SHMT1-209ENST00000582653 CSPG5O95196 566 aa23.04■■□□□ 1.28
SHMT1-209ENST00000582653 FDPSP14324 419 aaKnown RBP23.04■■□□□ 1.28
SHMT1-209ENST00000582653 EIF4BP23588 611 aaKnown RBP23.04■■□□□ 1.28
SHMT1-209ENST00000582653 IRS1P35568 1242 aa23.04■■□□□ 1.28
SHMT1-209ENST00000582653 UBE3AQ05086 875 aa23.04■■□□□ 1.28
SHMT1-209ENST00000582653 ANKRD1Q15327 319 aa23.04■■□□□ 1.28
SHMT1-209ENST00000582653 SMAD2Q15796 467 aaKnown RBP23.04■■□□□ 1.28
SHMT1-209ENST00000582653 ME3Q16798 604 aa23.04■■□□□ 1.28
SHMT1-209ENST00000582653 SH2D3AQ9BRG2 576 aa23.04■■□□□ 1.28
SHMT1-209ENST00000582653 C11orf16Q9NQ32 467 aa23.04■■□□□ 1.28
SHMT1-209ENST00000582653 TYW1Q9NV66 732 aaKnown RBP23.04■■□□□ 1.28
SHMT1-209ENST00000582653 C19orf67A6NJJ6 358 aa23.03■■□□□ 1.28
SHMT1-209ENST00000582653 STBD1O95210 358 aa23.03■■□□□ 1.28
SHMT1-209ENST00000582653 ALADP13716 330 aa23.03■■□□□ 1.28
SHMT1-209ENST00000582653 ZSCAN20P17040 1043 aaPredicted RBP23.03■■□□□ 1.28
SHMT1-209ENST00000582653 XBP1P17861 261 aa23.03■■□□□ 1.28
SHMT1-209ENST00000582653 TARBP2Q15633 366 aaKnown RBP23.03■■□□□ 1.28
SHMT1-209ENST00000582653 EARS2Q5JPH6 523 aaKnown RBP23.03■■□□□ 1.28
SHMT1-209ENST00000582653 SPOUT1Q5T280 376 aaKnown RBP23.03■■□□□ 1.28
SHMT1-209ENST00000582653 PIK3AP1Q6ZUJ8 805 aa23.03■■□□□ 1.28
SHMT1-209ENST00000582653 NIFKQ9BYG3 293 aaKnown RBP23.03■■□□□ 1.28
SHMT1-209ENST00000582653 SEPT9Q9UHD8 586 aaPredicted RBP23.03■■□□□ 1.28
SHMT1-209ENST00000582653 WDR81Q562E7 1941 aa23.03■■□□□ 1.28
SHMT1-209ENST00000582653 EML1O00423 815 aa23.02■■□□□ 1.28
SHMT1-209ENST00000582653 LINC01565O15544 149 aa23.02■■□□□ 1.28
SHMT1-209ENST00000582653 MBTPS2O43462 519 aa23.02■■□□□ 1.28
SHMT1-209ENST00000582653 CDC42EP1Q00587 391 aa23.02■■□□□ 1.28
SHMT1-209ENST00000582653 ZP2Q05996 745 aa23.02■■□□□ 1.28
SHMT1-209ENST00000582653 TBC1D8BQ0IIM8 1120 aa23.02■■□□□ 1.28
SHMT1-209ENST00000582653 MTERF2Q49AM1 385 aa23.02■■□□□ 1.28
SHMT1-209ENST00000582653 NEK8Q86SG6 692 aa23.02■■□□□ 1.28
SHMT1-209ENST00000582653 ADHFE1Q8IWW8 467 aa23.02■■□□□ 1.28
SHMT1-209ENST00000582653 EFHBQ8N7U6 833 aa23.02■■□□□ 1.28
SHMT1-209ENST00000582653 ARIH1Q9Y4X5 557 aaPredicted RBP23.02■■□□□ 1.28
SHMT1-209ENST00000582653 CCNT1O60563 726 aaKnown RBP23.01■■□□□ 1.27
SHMT1-209ENST00000582653 TBX10O75333 385 aa23.01■■□□□ 1.27
SHMT1-209ENST00000582653 GPC3P51654 580 aa23.01■■□□□ 1.27
SHMT1-209ENST00000582653 NEK4P51957 841 aa23.01■■□□□ 1.27
SHMT1-209ENST00000582653 DRP2Q13474 957 aa23.01■■□□□ 1.27
SHMT1-209ENST00000582653 CSPP1Q1MSJ5 1256 aa23.01■■□□□ 1.27
SHMT1-209ENST00000582653 XKR3Q5GH77 459 aa23.01■■□□□ 1.27
SHMT1-209ENST00000582653 ADGRD2Q7Z7M1 963 aa23.01■■□□□ 1.27
SHMT1-209ENST00000582653 MSLNLQ96KJ4 702 aa23.01■■□□□ 1.27
SHMT1-209ENST00000582653 CWH43Q9H720 699 aa23.01■■□□□ 1.27
SHMT1-209ENST00000582653 CD207Q9UJ71 328 aa23.01■■□□□ 1.27
SHMT1-209ENST00000582653 ATG2AQ2TAZ0 1938 aa23■■□□□ 1.27
SHMT1-209ENST00000582653 FAM205CA6NFA0 338 aa23■■□□□ 1.27
SHMT1-209ENST00000582653 DDX11L8A8MPP1 907 aa23■■□□□ 1.27
SHMT1-209ENST00000582653 FGF18O76093 207 aa23■■□□□ 1.27
SHMT1-209ENST00000582653 FGFR1P11362 822 aa23■■□□□ 1.27
SHMT1-209ENST00000582653 NR5A1Q13285 461 aa23■■□□□ 1.27
SHMT1-209ENST00000582653 SMAD4Q13485 552 aaKnown RBP23■■□□□ 1.27
SHMT1-209ENST00000582653 CLUL1Q15846 466 aa23■■□□□ 1.27
SHMT1-209ENST00000582653 PPP4R3AQ6IN85 833 aa23■■□□□ 1.27
SHMT1-209ENST00000582653 MICAL1Q8TDZ2 1067 aa23■■□□□ 1.27
SHMT1-209ENST00000582653 GTF3C6Q969F1 213 aa23■■□□□ 1.27
SHMT1-209ENST00000582653 CEP89Q96ST8 783 aa23■■□□□ 1.27
SHMT1-209ENST00000582653 TMEM117Q9H0C3 514 aa23■■□□□ 1.27
SHMT1-209ENST00000582653 KCNMB3Q9NPA1 279 aa23■■□□□ 1.27
SHMT1-209ENST00000582653 HOXA2O43364 376 aa22.99■■□□□ 1.27
SHMT1-209ENST00000582653 CSDE1O75534 798 aaKnown RBP22.99■■□□□ 1.27
SHMT1-209ENST00000582653 EYA4O95677 639 aa22.99■■□□□ 1.27
SHMT1-209ENST00000582653 DARSP14868 501 aaKnown RBP22.99■■□□□ 1.27
SHMT1-209ENST00000582653 FGFR4P22455 802 aa22.99■■□□□ 1.27
SHMT1-209ENST00000582653 NRIP1P48552 1158 aa22.99■■□□□ 1.27
SHMT1-209ENST00000582653 NDUFV1P49821 464 aa22.99■■□□□ 1.27
SHMT1-209ENST00000582653 PDE12Q6L8Q7 609 aaKnown RBP22.99■■□□□ 1.27
SHMT1-209ENST00000582653 RBM23Q86U06 439 aaKnown RBP22.99■■□□□ 1.27
SHMT1-209ENST00000582653 COLGALT1Q8NBJ5 622 aa22.99■■□□□ 1.27
SHMT1-209ENST00000582653 WASF1Q92558 559 aa22.99■■□□□ 1.27
SHMT1-209ENST00000582653 CASD1Q96PB1 797 aa22.99■■□□□ 1.27
SHMT1-209ENST00000582653 TLE6Q9H808 572 aa22.99■■□□□ 1.27
SHMT1-209ENST00000582653 CLEC1BQ9P126 229 aa22.99■■□□□ 1.27
SHMT1-209ENST00000582653 HCSTQ9UBK5 93 aa22.99■■□□□ 1.27
SHMT1-209ENST00000582653 VAV3Q9UKW4 847 aa22.99■■□□□ 1.27
SHMT1-209ENST00000582653 KIAA1671Q9BY89 1806 aa22.98■■□□□ 1.27
SHMT1-209ENST00000582653 FNDC1Q4ZHG4 1894 aaPredicted RBP22.98■■□□□ 1.27
SHMT1-209ENST00000582653 IGKV6-21A0A0C4DH24 114 aa22.98■■□□□ 1.27
SHMT1-209ENST00000582653 FAM86C2PA6NEL3 165 aa22.98■■□□□ 1.27
SHMT1-209ENST00000582653 FOSBP53539 338 aa22.98■■□□□ 1.27
SHMT1-209ENST00000582653 ERVFC1P60507 584 aa22.98■■□□□ 1.27
SHMT1-209ENST00000582653 PLCB3Q01970 1234 aa22.98■■□□□ 1.27
SHMT1-209ENST00000582653 LRRC55Q6ZSA7 311 aa22.98■■□□□ 1.27
SHMT1-209ENST00000582653 ANO5Q75V66 913 aa22.98■■□□□ 1.27
SHMT1-209ENST00000582653 ECHDC2Q86YB7 292 aa22.98■■□□□ 1.27
SHMT1-209ENST00000582653 HAS1Q92839 578 aa22.98■■□□□ 1.27
SHMT1-209ENST00000582653 FAM20AQ96MK3 541 aa22.98■■□□□ 1.27
SHMT1-209ENST00000582653 SCLT1Q96NL6 688 aa22.98■■□□□ 1.27
SHMT1-209ENST00000582653 TLR9Q9NR96 1032 aa22.98■■□□□ 1.27
SHMT1-209ENST00000582653 LZTS1Q9Y250 596 aa22.98■■□□□ 1.27
SHMT1-209ENST00000582653 A0A0U1RQF3 1178 aa22.97■■□□□ 1.27
SHMT1-209ENST00000582653 PRR33A8MZF0 331 aa22.97■■□□□ 1.27
SHMT1-209ENST00000582653 JAK2O60674 1132 aa22.97■■□□□ 1.27
SHMT1-209ENST00000582653 EOMESO95936 686 aa22.97■■□□□ 1.27
SHMT1-209ENST00000582653 GCFC2P16383 781 aaKnown RBP22.97■■□□□ 1.27
SHMT1-209ENST00000582653 LAG3P18627 525 aa22.97■■□□□ 1.27
SHMT1-209ENST00000582653 KRT2P35908 639 aa22.97■■□□□ 1.27
SHMT1-209ENST00000582653 DNM2P50570 870 aa22.97■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms