RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 SYT2Q8N9I0 419 aaPredicted RBP10.63□□□□□ -0.71
CCDC40-214ENST00000575431 DBF4BQ8NFT6 615 aa10.63□□□□□ -0.71
CCDC40-214ENST00000575431 PHOSPHO2Q8TCD6 241 aa10.63□□□□□ -0.71
CCDC40-214ENST00000575431 SPATA32Q96LK8 384 aa10.63□□□□□ -0.71
CCDC40-214ENST00000575431 RNPC3Q96LT9 517 aaKnown RBP10.63□□□□□ -0.71
CCDC40-214ENST00000575431 SCLT1Q96NL6 688 aa10.63□□□□□ -0.71
CCDC40-214ENST00000575431 PNMA5Q96PV4 448 aa10.63□□□□□ -0.71
CCDC40-214ENST00000575431 PYM1Q9BRP8 204 aaKnown RBP10.63□□□□□ -0.71
CCDC40-214ENST00000575431 IFIH1Q9BYX4 1025 aaKnown RBP10.63□□□□□ -0.71
CCDC40-214ENST00000575431 GCOM2Q9BZD3 368 aaPredicted RBP10.63□□□□□ -0.71
CCDC40-214ENST00000575431 RNF216Q9NWF9 866 aaPredicted RBP10.63□□□□□ -0.71
CCDC40-214ENST00000575431 STK17AQ9UEE5 414 aa10.63□□□□□ -0.71
CCDC40-214ENST00000575431 COL4A3BPQ9Y5P4 624 aa10.63□□□□□ -0.71
CCDC40-214ENST00000575431 E9PMD0 336 aa10.62□□□□□ -0.71
CCDC40-214ENST00000575431 USO1O60763 962 aaKnown RBP10.62□□□□□ -0.71
CCDC40-214ENST00000575431 RPS6KA5O75582 802 aa10.62□□□□□ -0.71
CCDC40-214ENST00000575431 VTNP04004 478 aa10.62□□□□□ -0.71
CCDC40-214ENST00000575431 NCLP19338 710 aaKnown RBP10.62□□□□□ -0.71
CCDC40-214ENST00000575431 KCNJ6P48051 423 aa10.62□□□□□ -0.71
CCDC40-214ENST00000575431 ME1P48163 572 aa10.62□□□□□ -0.71
CCDC40-214ENST00000575431 GRIN1Q05586 938 aa10.62□□□□□ -0.71
CCDC40-214ENST00000575431 LPIN1Q14693 890 aa10.62□□□□□ -0.71
CCDC40-214ENST00000575431 PPP2R5AQ15172 486 aa10.62□□□□□ -0.71
CCDC40-214ENST00000575431 LRIT3Q3SXY7 679 aa10.62□□□□□ -0.71
CCDC40-214ENST00000575431 FOXD4L6Q3SYB3 417 aaPredicted RBP10.62□□□□□ -0.71
CCDC40-214ENST00000575431 RASIP1Q5U651 963 aa10.62□□□□□ -0.71
CCDC40-214ENST00000575431 RRAGBQ5VZM2 374 aa10.62□□□□□ -0.71
CCDC40-214ENST00000575431 FOXD4L3Q6VB84 417 aaPredicted RBP10.62□□□□□ -0.71
CCDC40-214ENST00000575431 OTOP2Q7RTS6 562 aa10.62□□□□□ -0.71
CCDC40-214ENST00000575431 PRPF31Q8WWY3 499 aaKnown RBP10.62□□□□□ -0.71
CCDC40-214ENST00000575431 NLRP7Q8WX94 980 aa10.62□□□□□ -0.71
CCDC40-214ENST00000575431 SYMPKQ92797 1274 aaKnown RBP10.62□□□□□ -0.71
CCDC40-214ENST00000575431 KIFAP3Q92845 792 aa10.62□□□□□ -0.71
CCDC40-214ENST00000575431 SLC9A7Q96T83 725 aa10.62□□□□□ -0.71
CCDC40-214ENST00000575431 ADAMTS10Q9H324 1103 aa10.62□□□□□ -0.71
CCDC40-214ENST00000575431 C17orf75Q9HAS0 396 aa10.62□□□□□ -0.71
CCDC40-214ENST00000575431 XPNPEP1Q9NQW7 623 aa10.62□□□□□ -0.71
CCDC40-214ENST00000575431 FAM13BQ9NYF5 915 aa10.62□□□□□ -0.71
CCDC40-214ENST00000575431 CHMP5Q9NZZ3 219 aa10.62□□□□□ -0.71
CCDC40-214ENST00000575431 GINS2Q9Y248 185 aa10.62□□□□□ -0.71
CCDC40-214ENST00000575431 SCN5AQ14524 2016 aa10.62□□□□□ -0.71
CCDC40-214ENST00000575431 A0A087WWV3 80 aa10.61□□□□□ -0.71
CCDC40-214ENST00000575431 A0A087WZ62 844 aa10.61□□□□□ -0.71
CCDC40-214ENST00000575431 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.61□□□□□ -0.71
CCDC40-214ENST00000575431 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.61□□□□□ -0.71
CCDC40-214ENST00000575431 PLA2G4BP0C869 781 aa10.61□□□□□ -0.71
CCDC40-214ENST00000575431 GHRP10912 638 aa10.61□□□□□ -0.71
CCDC40-214ENST00000575431 DARSP14868 501 aaKnown RBP10.61□□□□□ -0.71
CCDC40-214ENST00000575431 SFPQP23246 707 aaKnown RBP eCLIP10.61□□□□□ -0.71
CCDC40-214ENST00000575431 GUCY2CP25092 1073 aa10.61□□□□□ -0.71
CCDC40-214ENST00000575431 ARL2P36404 184 aa10.61□□□□□ -0.71
CCDC40-214ENST00000575431 PHKA2P46019 1235 aa10.61□□□□□ -0.71
CCDC40-214ENST00000575431 LAMTOR4Q0VGL1 99 aa10.61□□□□□ -0.71
CCDC40-214ENST00000575431 PAK2Q13177 524 aa10.61□□□□□ -0.71
CCDC40-214ENST00000575431 DRP2Q13474 957 aa10.61□□□□□ -0.71
CCDC40-214ENST00000575431 KIZQ2M2Z5 673 aa10.61□□□□□ -0.71
CCDC40-214ENST00000575431 C9orf50Q5SZB4 431 aa10.61□□□□□ -0.71
CCDC40-214ENST00000575431 ADALQ6DHV7 355 aa10.61□□□□□ -0.71
CCDC40-214ENST00000575431 SRGAP1Q7Z6B7 1085 aa10.61□□□□□ -0.71
CCDC40-214ENST00000575431 IFNLR1Q8IU57 520 aaPredicted RBP10.61□□□□□ -0.71
CCDC40-214ENST00000575431 LEO1Q8WVC0 666 aaPredicted RBP10.61□□□□□ -0.71
CCDC40-214ENST00000575431 TMEM143Q96AN5 459 aa10.61□□□□□ -0.71
CCDC40-214ENST00000575431 VWCEQ96DN2 955 aa10.61□□□□□ -0.71
CCDC40-214ENST00000575431 EPSTI1Q96J88 318 aa10.61□□□□□ -0.71
CCDC40-214ENST00000575431 DRC1Q96MC2 740 aa10.61□□□□□ -0.71
CCDC40-214ENST00000575431 OSMRQ99650 979 aa10.61□□□□□ -0.71
CCDC40-214ENST00000575431 FDXACB1Q9BRP7 624 aaPredicted RBP10.61□□□□□ -0.71
CCDC40-214ENST00000575431 NFKBIZQ9BYH8 718 aa10.61□□□□□ -0.71
CCDC40-214ENST00000575431 LRRC27Q9C0I9 530 aa10.61□□□□□ -0.71
CCDC40-214ENST00000575431 CUEDC2Q9H467 287 aa10.61□□□□□ -0.71
CCDC40-214ENST00000575431 PADI3Q9ULW8 664 aa10.61□□□□□ -0.71
CCDC40-214ENST00000575431 PCDHA7Q9UN72 937 aa10.61□□□□□ -0.71
CCDC40-214ENST00000575431 RBM19Q9Y4C8 960 aaKnown RBP10.61□□□□□ -0.71
CCDC40-214ENST00000575431 SLC4A7Q9Y6M7 1214 aa10.61□□□□□ -0.71
CCDC40-214ENST00000575431 SIP14410 1827 aa10.61□□□□□ -0.71
CCDC40-214ENST00000575431 PHLPP2Q6ZVD8 1323 aa10.6□□□□□ -0.71
CCDC40-214ENST00000575431 ZBBXA8MT70 800 aa10.6□□□□□ -0.71
CCDC40-214ENST00000575431 AMHP03971 560 aa10.6□□□□□ -0.71
CCDC40-214ENST00000575431 ZSCAN20P17040 1043 aaPredicted RBP10.6□□□□□ -0.71
CCDC40-214ENST00000575431 PLCG1P19174 1290 aa10.6□□□□□ -0.71
CCDC40-214ENST00000575431 STAT6P42226 847 aa10.6□□□□□ -0.71
CCDC40-214ENST00000575431 NAMPTP43490 491 aa10.6□□□□□ -0.71
CCDC40-214ENST00000575431 NCBP1Q09161 790 aaKnown RBP10.6□□□□□ -0.71
CCDC40-214ENST00000575431 NFX1Q12986 1120 aaKnown RBP10.6□□□□□ -0.71
CCDC40-214ENST00000575431 KARSQ15046 597 aaKnown RBP10.6□□□□□ -0.71
CCDC40-214ENST00000575431 CSPP1Q1MSJ5 1256 aa10.6□□□□□ -0.71
CCDC40-214ENST00000575431 AXDND1Q5T1B0 1012 aaPredicted RBP10.6□□□□□ -0.71
CCDC40-214ENST00000575431 FAM102BQ5T8I3 360 aa10.6□□□□□ -0.71
CCDC40-214ENST00000575431 RINT1Q6NUQ1 792 aa10.6□□□□□ -0.71
CCDC40-214ENST00000575431 C1orf186Q6ZWK4 172 aa10.6□□□□□ -0.71
CCDC40-214ENST00000575431 USP49Q70CQ1 688 aa10.6□□□□□ -0.71
CCDC40-214ENST00000575431 KCNK18Q7Z418 384 aa10.6□□□□□ -0.71
CCDC40-214ENST00000575431 IQUBQ8NA54 791 aa10.6□□□□□ -0.71
CCDC40-214ENST00000575431 RNF149Q8NC42 400 aa10.6□□□□□ -0.71
CCDC40-214ENST00000575431 LARP4BQ92615 738 aaKnown RBP10.6□□□□□ -0.71
CCDC40-214ENST00000575431 RAD54LQ92698 747 aa10.6□□□□□ -0.71
CCDC40-214ENST00000575431 IFT74Q96LB3 600 aa10.6□□□□□ -0.71
CCDC40-214ENST00000575431 NLRP4Q96MN2 994 aa10.6□□□□□ -0.71
CCDC40-214ENST00000575431 CLIC6Q96NY7 704 aa10.6□□□□□ -0.71
CCDC40-214ENST00000575431 PLIN2Q99541 437 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms