RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 GREB1Q4ZG55 1949 aa12.98□□□□□ -0.33
CDH3-208ENST00000569036 NT5C1B-RDH14C9J2C7 533 aa12.97□□□□□ -0.33
CDH3-208ENST00000569036 ANHXE9PGG2 379 aa12.97□□□□□ -0.33
CDH3-208ENST00000569036 HOXA2O43364 376 aa12.97□□□□□ -0.33
CDH3-208ENST00000569036 FIBPO43427 364 aa12.97□□□□□ -0.33
CDH3-208ENST00000569036 RPS6KA5O75582 802 aa12.97□□□□□ -0.33
CDH3-208ENST00000569036 FGRP09769 529 aa12.97□□□□□ -0.33
CDH3-208ENST00000569036 CTSAP10619 480 aa12.97□□□□□ -0.33
CDH3-208ENST00000569036 RLBP1P12271 317 aa12.97□□□□□ -0.33
CDH3-208ENST00000569036 TDGF1P13385 188 aa12.97□□□□□ -0.33
CDH3-208ENST00000569036 METAP2P50579 478 aaKnown RBP eCLIP12.97□□□□□ -0.33
CDH3-208ENST00000569036 CLCN4P51793 760 aa12.97□□□□□ -0.33
CDH3-208ENST00000569036 GIT2Q14161 759 aa12.97□□□□□ -0.33
CDH3-208ENST00000569036 MLF2Q15773 248 aaPredicted RBP12.97□□□□□ -0.33
CDH3-208ENST00000569036 RRP12Q5JTH9 1297 aaKnown RBP12.97□□□□□ -0.33
CDH3-208ENST00000569036 PRR23BQ6ZRT6 265 aa12.97□□□□□ -0.33
CDH3-208ENST00000569036 CELF5Q8N6W0 485 aaKnown RBP12.97□□□□□ -0.33
CDH3-208ENST00000569036 ST13P5Q8NFI4 369 aaPredicted RBP12.97□□□□□ -0.33
CDH3-208ENST00000569036 CMASQ8NFW8 434 aaPredicted RBP12.97□□□□□ -0.33
CDH3-208ENST00000569036 TMEM40Q8WWA1 233 aa12.97□□□□□ -0.33
CDH3-208ENST00000569036 TMEM169Q96HH4 297 aa12.97□□□□□ -0.33
CDH3-208ENST00000569036 LTB4R2Q9NPC1 389 aa12.97□□□□□ -0.33
CDH3-208ENST00000569036 TOMM22Q9NS69 142 aa12.97□□□□□ -0.33
CDH3-208ENST00000569036 MAP3K20Q9NYL2 800 aaKnown RBP12.97□□□□□ -0.33
CDH3-208ENST00000569036 ST3GAL5Q9UNP4 418 aa12.97□□□□□ -0.33
CDH3-208ENST00000569036 PCDHA2Q9Y5H9 948 aa12.97□□□□□ -0.33
CDH3-208ENST00000569036 NUMBLQ9Y6R0 609 aa12.97□□□□□ -0.33
CDH3-208ENST00000569036 RRN3P2A6NIE6 340 aa12.96□□□□□ -0.33
CDH3-208ENST00000569036 CYSRT1A8MQ03 144 aa12.96□□□□□ -0.33
CDH3-208ENST00000569036 FOXD2O60548 495 aaPredicted RBP12.96□□□□□ -0.33
CDH3-208ENST00000569036 RAB11FIP3O75154 756 aa12.96□□□□□ -0.33
CDH3-208ENST00000569036 INSRRP14616 1297 aa12.96□□□□□ -0.33
CDH3-208ENST00000569036 POLGP54098 1239 aaPredicted RBP12.96□□□□□ -0.33
CDH3-208ENST00000569036 GPC5P78333 572 aa12.96□□□□□ -0.33
CDH3-208ENST00000569036 TMEM173Q86WV6 379 aaPredicted RBP12.96□□□□□ -0.33
CDH3-208ENST00000569036 FTSJ3Q8IY81 847 aaKnown RBP12.96□□□□□ -0.33
CDH3-208ENST00000569036 ABI1Q8IZP0 508 aa12.96□□□□□ -0.33
CDH3-208ENST00000569036 ZCCHC14Q8WYQ9 949 aaKnown RBP12.96□□□□□ -0.33
CDH3-208ENST00000569036 CLDN23Q96B33 292 aa12.96□□□□□ -0.33
CDH3-208ENST00000569036 ADAM33Q9BZ11 813 aa12.96□□□□□ -0.33
CDH3-208ENST00000569036 GINS2Q9Y248 185 aa12.96□□□□□ -0.33
CDH3-208ENST00000569036 STAM2O75886 525 aa12.95□□□□□ -0.34
CDH3-208ENST00000569036 KCNK5O95279 499 aa12.95□□□□□ -0.34
CDH3-208ENST00000569036 LAMP2P13473 410 aa12.95□□□□□ -0.34
CDH3-208ENST00000569036 CD72P21854 359 aa12.95□□□□□ -0.34
CDH3-208ENST00000569036 ANP32AP39687 249 aaKnown RBP12.95□□□□□ -0.34
CDH3-208ENST00000569036 RBM25P49756 843 aaKnown RBP12.95□□□□□ -0.34
CDH3-208ENST00000569036 BCAR1P56945 870 aa12.95□□□□□ -0.34
CDH3-208ENST00000569036 PRKCQQ04759 706 aa12.95□□□□□ -0.34
CDH3-208ENST00000569036 CLLU1OSQ5K130 101 aa12.95□□□□□ -0.34
CDH3-208ENST00000569036 FCHSD1Q86WN1 690 aa12.95□□□□□ -0.34
CDH3-208ENST00000569036 TRAPPC12Q8WVT3 735 aa12.95□□□□□ -0.34
CDH3-208ENST00000569036 GATA6Q92908 595 aa12.95□□□□□ -0.34
CDH3-208ENST00000569036 TTC14Q96N46 770 aa12.95□□□□□ -0.34
CDH3-208ENST00000569036 SENP7Q9BQF6 1050 aa12.95□□□□□ -0.34
CDH3-208ENST00000569036 JMJD4Q9H9V9 463 aa12.95□□□□□ -0.34
CDH3-208ENST00000569036 CDHR5Q9HBB8 845 aa12.95□□□□□ -0.34
CDH3-208ENST00000569036 RTEL1Q9NZ71 1219 aa12.95□□□□□ -0.34
CDH3-208ENST00000569036 WASF3Q9UPY6 502 aa12.95□□□□□ -0.34
CDH3-208ENST00000569036 ADAMTS20P59510 1910 aa12.95□□□□□ -0.34
CDH3-208ENST00000569036 FRMPD4Q14CM0 1322 aa12.94□□□□□ -0.34
CDH3-208ENST00000569036 GSTTP1A0A1W2PQM5 241 aa12.94□□□□□ -0.34
CDH3-208ENST00000569036 DHX16O60231 1041 aaKnown RBP12.94□□□□□ -0.34
CDH3-208ENST00000569036 PPP1R11O60927 126 aaPredicted RBP12.94□□□□□ -0.34
CDH3-208ENST00000569036 SPINK2P20155 84 aa12.94□□□□□ -0.34
CDH3-208ENST00000569036 RPS9P46781 194 aaKnown RBP12.94□□□□□ -0.34
CDH3-208ENST00000569036 ALDH7A1P49419 539 aaKnown RBP12.94□□□□□ -0.34
CDH3-208ENST00000569036 DSC3Q14574 896 aa12.94□□□□□ -0.34
CDH3-208ENST00000569036 AASDHQ4L235 1098 aaPredicted RBP12.94□□□□□ -0.34
CDH3-208ENST00000569036 ZBTB41Q5SVQ8 909 aa12.94□□□□□ -0.34
CDH3-208ENST00000569036 ODR4Q5SWX8 454 aa12.94□□□□□ -0.34
CDH3-208ENST00000569036 DDX53Q86TM3 631 aaKnown RBP12.94□□□□□ -0.34
CDH3-208ENST00000569036 NME8Q8N427 588 aa12.94□□□□□ -0.34
CDH3-208ENST00000569036 RPP25Q9BUL9 199 aaKnown RBP12.94□□□□□ -0.34
CDH3-208ENST00000569036 AMNQ9BXJ7 453 aa12.94□□□□□ -0.34
CDH3-208ENST00000569036 RHOBTB2Q9BYZ6 727 aa12.94□□□□□ -0.34
CDH3-208ENST00000569036 SMARCAD1Q9H4L7 1026 aa12.94□□□□□ -0.34
CDH3-208ENST00000569036 VAT1LQ9HCJ6 419 aa12.94□□□□□ -0.34
CDH3-208ENST00000569036 CCDC195A0A1B0GUA6 201 aa12.93□□□□□ -0.34
CDH3-208ENST00000569036 SMIM35A0A1B0GVV1 85 aa12.93□□□□□ -0.34
CDH3-208ENST00000569036 GPR182O15218 404 aa12.93□□□□□ -0.34
CDH3-208ENST00000569036 TARSP26639 723 aaKnown RBP12.93□□□□□ -0.34
CDH3-208ENST00000569036 KLRC2P26717 231 aa12.93□□□□□ -0.34
CDH3-208ENST00000569036 NRLP54845 237 aa12.93□□□□□ -0.34
CDH3-208ENST00000569036 FOXC1Q12948 553 aa12.93□□□□□ -0.34
CDH3-208ENST00000569036 MTAPQ13126 283 aa12.93□□□□□ -0.34
CDH3-208ENST00000569036 SLC44A4Q53GD3 710 aa12.93□□□□□ -0.34
CDH3-208ENST00000569036 PSAPL1Q6NUJ1 521 aa12.93□□□□□ -0.34
CDH3-208ENST00000569036 RSPO2Q6UXX9 243 aaPredicted RBP12.93□□□□□ -0.34
CDH3-208ENST00000569036 CYP26C1Q6V0L0 522 aa12.93□□□□□ -0.34
CDH3-208ENST00000569036 GET4Q7L5D6 327 aaPredicted RBP12.93□□□□□ -0.34
CDH3-208ENST00000569036 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.93□□□□□ -0.34
CDH3-208ENST00000569036 FAM228AQ86W67 206 aa12.93□□□□□ -0.34
CDH3-208ENST00000569036 SAMD3Q8N6K7 520 aa12.93□□□□□ -0.34
CDH3-208ENST00000569036 BCL7CQ8WUZ0 217 aaPredicted RBP12.93□□□□□ -0.34
CDH3-208ENST00000569036 SEPT1Q8WYJ6 367 aa12.93□□□□□ -0.34
CDH3-208ENST00000569036 KLHL5Q96PQ7 755 aa12.93□□□□□ -0.34
CDH3-208ENST00000569036 MAN1C1Q9NR34 630 aa12.93□□□□□ -0.34
CDH3-208ENST00000569036 ECHDC1Q9NTX5 307 aa12.93□□□□□ -0.34
CDH3-208ENST00000569036 GCOM1H8Y6P7 765 aaPredicted RBP12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms