RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 SART3Q15020 963 aaKnown RBP3.75□□□□□ -1.81
VPS35-208ENST00000568612 FILIP1LQ4L180 1135 aa3.75□□□□□ -1.81
VPS35-208ENST00000568612 UBXN11Q5T124 520 aa3.75□□□□□ -1.81
VPS35-208ENST00000568612 CCDC30Q5VVM6 783 aa3.75□□□□□ -1.81
VPS35-208ENST00000568612 LEKR1Q6ZMV7 388 aa3.75□□□□□ -1.81
VPS35-208ENST00000568612 BRAPQ7Z569 592 aa3.75□□□□□ -1.81
VPS35-208ENST00000568612 FERMT3Q86UX7 667 aa3.75□□□□□ -1.81
VPS35-208ENST00000568612 FAM124AQ86V42 546 aa3.75□□□□□ -1.81
VPS35-208ENST00000568612 ZNF761Q86XN6 746 aaPredicted RBP3.75□□□□□ -1.81
VPS35-208ENST00000568612 IQCF2Q8IXL9 164 aa3.75□□□□□ -1.81
VPS35-208ENST00000568612 SMC5Q8IY18 1101 aa3.75□□□□□ -1.81
VPS35-208ENST00000568612 NLGN4XQ8N0W4 816 aa3.75□□□□□ -1.81
VPS35-208ENST00000568612 DRAXINQ8NBI3 349 aaPredicted RBP3.75□□□□□ -1.81
VPS35-208ENST00000568612 TTLL11Q8NHH1 800 aa3.75□□□□□ -1.81
VPS35-208ENST00000568612 CCDC26Q8TAB7 109 aa3.75□□□□□ -1.81
VPS35-208ENST00000568612 SLC7A14Q8TBB6 771 aa3.75□□□□□ -1.81
VPS35-208ENST00000568612 MORC4Q8TE76 937 aa3.75□□□□□ -1.81
VPS35-208ENST00000568612 STAG1Q8WVM7 1258 aa3.75□□□□□ -1.81
VPS35-208ENST00000568612 TEKT1Q969V4 418 aa3.75□□□□□ -1.81
VPS35-208ENST00000568612 RELTQ969Z4 430 aa3.75□□□□□ -1.81
VPS35-208ENST00000568612 RMDN2Q96LZ7 410 aa3.75□□□□□ -1.81
VPS35-208ENST00000568612 WRNIP1Q96S55 665 aa3.75□□□□□ -1.81
VPS35-208ENST00000568612 KRTAP4-7Q9BYR0 210 aa3.75□□□□□ -1.81
VPS35-208ENST00000568612 IQCGQ9H095 443 aaKnown RBP3.75□□□□□ -1.81
VPS35-208ENST00000568612 ZNF446Q9NWS9 450 aa3.75□□□□□ -1.81
VPS35-208ENST00000568612 CTNNA3Q9UI47 895 aa3.75□□□□□ -1.81
VPS35-208ENST00000568612 CBLCQ9ULV8 474 aa3.75□□□□□ -1.81
VPS35-208ENST00000568612 NUDCQ9Y266 331 aa3.75□□□□□ -1.81
VPS35-208ENST00000568612 COQ6Q9Y2Z9 468 aa3.75□□□□□ -1.81
VPS35-208ENST00000568612 ATP23Q9Y6H3 246 aa3.75□□□□□ -1.81
VPS35-208ENST00000568612 PTPRGP23470 1445 aa3.75□□□□□ -1.81
VPS35-208ENST00000568612 NCOA3Q9Y6Q9 1424 aa3.75□□□□□ -1.81
VPS35-208ENST00000568612 CGNL1Q0VF96 1302 aa3.74□□□□□ -1.81
VPS35-208ENST00000568612 ADAMTS20P59510 1910 aa3.74□□□□□ -1.81
VPS35-208ENST00000568612 LOC101059915A0A1B0GWI6 518 aaPredicted RBP3.74□□□□□ -1.81
VPS35-208ENST00000568612 TCRBV5S4A2TA0A5A2 114 aa3.74□□□□□ -1.81
VPS35-208ENST00000568612 TMCO5BA8MYB1 307 aa3.74□□□□□ -1.81
VPS35-208ENST00000568612 TIMM44O43615 452 aa3.74□□□□□ -1.81
VPS35-208ENST00000568612 SH3BP5O60239 455 aa3.74□□□□□ -1.81
VPS35-208ENST00000568612 CDKL5O76039 1030 aa3.74□□□□□ -1.81
VPS35-208ENST00000568612 SMC2O95347 1197 aa3.74□□□□□ -1.81
VPS35-208ENST00000568612 RAPGEF3O95398 923 aa3.74□□□□□ -1.81
VPS35-208ENST00000568612 MAP4K4O95819 1239 aaPredicted RBP3.74□□□□□ -1.81
VPS35-208ENST00000568612 CKMP06732 381 aa3.74□□□□□ -1.81
VPS35-208ENST00000568612 ENO2P09104 434 aaPredicted RBP3.74□□□□□ -1.81
VPS35-208ENST00000568612 TPM1P09493 284 aa3.74□□□□□ -1.81
VPS35-208ENST00000568612 PTPN1P18031 435 aaKnown RBP3.74□□□□□ -1.81
VPS35-208ENST00000568612 CNR2P34972 360 aa3.74□□□□□ -1.81
VPS35-208ENST00000568612 IL13P35225 146 aa3.74□□□□□ -1.81
VPS35-208ENST00000568612 GYS2P54840 703 aa3.74□□□□□ -1.81
VPS35-208ENST00000568612 JAM2P57087 298 aa3.74□□□□□ -1.81
VPS35-208ENST00000568612 PFKPQ01813 784 aa3.74□□□□□ -1.81
VPS35-208ENST00000568612 CCDC15Q0P6D6 951 aa3.74□□□□□ -1.81
VPS35-208ENST00000568612 SKIDA1Q1XH10 827 aa3.74□□□□□ -1.81
VPS35-208ENST00000568612 CCDC184Q52MB2 194 aa3.74□□□□□ -1.81
VPS35-208ENST00000568612 HABP4Q5JVS0 413 aaKnown RBP3.74□□□□□ -1.81
VPS35-208ENST00000568612 CD276Q5ZPR3 534 aa3.74□□□□□ -1.81
VPS35-208ENST00000568612 NAIF1Q69YI7 327 aaPredicted RBP3.74□□□□□ -1.81
VPS35-208ENST00000568612 TTC19Q6DKK2 380 aaPredicted RBP3.74□□□□□ -1.81
VPS35-208ENST00000568612 KCNV1Q6PIU1 500 aa3.74□□□□□ -1.81
VPS35-208ENST00000568612 MMS22LQ6ZRQ5 1243 aa3.74□□□□□ -1.81
VPS35-208ENST00000568612 C16orf59Q7L2K0 433 aa3.74□□□□□ -1.81
VPS35-208ENST00000568612 CCDC186Q7Z3E2 898 aa3.74□□□□□ -1.81
VPS35-208ENST00000568612 FRMD5Q7Z6J6 570 aa3.74□□□□□ -1.81
VPS35-208ENST00000568612 SRLQ86TD4 932 aa3.74□□□□□ -1.81
VPS35-208ENST00000568612 TAX1BP1Q86VP1 789 aa3.74□□□□□ -1.81
VPS35-208ENST00000568612 IQUBQ8NA54 791 aa3.74□□□□□ -1.81
VPS35-208ENST00000568612 TXNDC5Q8NBS9 432 aaKnown RBP3.74□□□□□ -1.81
VPS35-208ENST00000568612 GPT2Q8TD30 523 aa3.74□□□□□ -1.81
VPS35-208ENST00000568612 SH3RF2Q8TEC5 729 aa3.74□□□□□ -1.81
VPS35-208ENST00000568612 SH3TC2Q8TF17 1288 aa3.74□□□□□ -1.81
VPS35-208ENST00000568612 SYAP1Q96A49 352 aaPredicted RBP3.74□□□□□ -1.81
VPS35-208ENST00000568612 MIA2Q96PC5 1412 aa3.74□□□□□ -1.81
VPS35-208ENST00000568612 SIN3AQ96ST3 1273 aa3.74□□□□□ -1.81
VPS35-208ENST00000568612 TMEM168Q9H0V1 697 aa3.74□□□□□ -1.81
VPS35-208ENST00000568612 RWDD1Q9H446 243 aaPredicted RBP3.74□□□□□ -1.81
VPS35-208ENST00000568612 NCOA5Q9HCD5 579 aaKnown RBP3.74□□□□□ -1.81
VPS35-208ENST00000568612 SLC39A2Q9NP94 309 aa3.74□□□□□ -1.81
VPS35-208ENST00000568612 DLL4Q9NR61 685 aa3.74□□□□□ -1.81
VPS35-208ENST00000568612 ARHGAP20Q9P2F6 1191 aa3.74□□□□□ -1.81
VPS35-208ENST00000568612 ARHGAP28Q9P2N2 729 aa3.74□□□□□ -1.81
VPS35-208ENST00000568612 FTSJ1Q9UET6 329 aa3.74□□□□□ -1.81
VPS35-208ENST00000568612 RAPGEFL1Q9UHV5 662 aa3.74□□□□□ -1.81
VPS35-208ENST00000568612 PUF60Q9UHX1 559 aaKnown RBP3.74□□□□□ -1.81
VPS35-208ENST00000568612 ZFP69BQ9UJL9 534 aa3.74□□□□□ -1.81
VPS35-208ENST00000568612 SRPK3Q9UPE1 567 aa3.74□□□□□ -1.81
VPS35-208ENST00000568612 WASF3Q9UPY6 502 aa3.74□□□□□ -1.81
VPS35-208ENST00000568612 UTP18Q9Y5J1 556 aaKnown RBP eCLIP3.74□□□□□ -1.81
VPS35-208ENST00000568612 CCDC88BA6NC98 1476 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 SOS1Q07889 1333 aaPredicted RBP3.73□□□□□ -1.81
VPS35-208ENST00000568612 RRBP1Q9P2E9 1410 aaKnown RBP3.73□□□□□ -1.81
VPS35-208ENST00000568612 MROH6A6NGR9 719 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 ACOT7O00154 380 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 MAN2B1O00754 1011 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 SCDO00767 359 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 OPA1O60313 960 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 NOBOXO60393 691 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 PEX14O75381 377 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 KRT37O76014 449 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 SNUPNO95149 360 aaKnown RBP3.73□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms