RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 TRIOBPQ9H2D6 2365 aa9.39□□□□□ -0.91
SF3B3-212ENST00000568539 IGKV6-21A0A0C4DH24 114 aa9.39□□□□□ -0.91
SF3B3-212ENST00000568539 A0A0U1RQG5 324 aaPredicted RBP9.39□□□□□ -0.91
SF3B3-212ENST00000568539 C17orf102A2RUQ5 167 aa9.39□□□□□ -0.91
SF3B3-212ENST00000568539 MBLAC1A4D2B0 266 aaPredicted RBP9.39□□□□□ -0.91
SF3B3-212ENST00000568539 MYMKA6NI61 221 aa9.39□□□□□ -0.91
SF3B3-212ENST00000568539 KLRC1P26715 233 aa9.39□□□□□ -0.91
SF3B3-212ENST00000568539 CASP1P29466 404 aa9.39□□□□□ -0.91
SF3B3-212ENST00000568539 AFMP43652 599 aa9.39□□□□□ -0.91
SF3B3-212ENST00000568539 POLGP54098 1239 aaPredicted RBP9.39□□□□□ -0.91
SF3B3-212ENST00000568539 AMPD3Q01432 767 aa9.39□□□□□ -0.91
SF3B3-212ENST00000568539 PTPN11Q06124 597 aaPredicted RBP9.39□□□□□ -0.91
SF3B3-212ENST00000568539 TBC1D8BQ0IIM8 1120 aa9.39□□□□□ -0.91
SF3B3-212ENST00000568539 MAPK7Q13164 816 aa9.39□□□□□ -0.91
SF3B3-212ENST00000568539 GIT2Q14161 759 aa9.39□□□□□ -0.91
SF3B3-212ENST00000568539 EMC2Q15006 297 aa9.39□□□□□ -0.91
SF3B3-212ENST00000568539 POSTNQ15063 836 aa9.39□□□□□ -0.91
SF3B3-212ENST00000568539 GDF6Q6KF10 455 aaPredicted RBP9.39□□□□□ -0.91
SF3B3-212ENST00000568539 CNNM4Q6P4Q7 775 aa9.39□□□□□ -0.91
SF3B3-212ENST00000568539 MTHFD1LQ6UB35 978 aa9.39□□□□□ -0.91
SF3B3-212ENST00000568539 EXOC8Q8IYI6 725 aa9.39□□□□□ -0.91
SF3B3-212ENST00000568539 SLC7A3Q8WY07 619 aa9.39□□□□□ -0.91
SF3B3-212ENST00000568539 DDX12PQ92771 950 aa9.39□□□□□ -0.91
SF3B3-212ENST00000568539 ZBTB10Q96DT7 871 aa9.39□□□□□ -0.91
SF3B3-212ENST00000568539 C7orf25Q9BPX7 421 aa9.39□□□□□ -0.91
SF3B3-212ENST00000568539 TIPINQ9BVW5 301 aa9.39□□□□□ -0.91
SF3B3-212ENST00000568539 SEZ6LQ9BYH1 1024 aa9.39□□□□□ -0.91
SF3B3-212ENST00000568539 TRIM9Q9C026 710 aa9.39□□□□□ -0.91
SF3B3-212ENST00000568539 LRRC27Q9C0I9 530 aa9.39□□□□□ -0.91
SF3B3-212ENST00000568539 SENP6Q9GZR1 1112 aaPredicted RBP9.39□□□□□ -0.91
SF3B3-212ENST00000568539 CLSTN2Q9H4D0 955 aa9.39□□□□□ -0.91
SF3B3-212ENST00000568539 ATP6V0A4Q9HBG4 840 aa9.39□□□□□ -0.91
SF3B3-212ENST00000568539 TUBE1Q9UJT0 475 aa9.39□□□□□ -0.91
SF3B3-212ENST00000568539 NPHP3-ACAD11A0A0J9YXS1 232 aa9.38□□□□□ -0.91
SF3B3-212ENST00000568539 ARVCFO00192 962 aa9.38□□□□□ -0.91
SF3B3-212ENST00000568539 MAGEB2O15479 319 aa9.38□□□□□ -0.91
SF3B3-212ENST00000568539 TREHO43280 583 aa9.38□□□□□ -0.91
SF3B3-212ENST00000568539 GAS2O43903 313 aaKnown RBP9.38□□□□□ -0.91
SF3B3-212ENST00000568539 TRAK2O60296 914 aa9.38□□□□□ -0.91
SF3B3-212ENST00000568539 MYL1P05976 194 aa9.38□□□□□ -0.91
SF3B3-212ENST00000568539 GNAT1P11488 350 aa9.38□□□□□ -0.91
SF3B3-212ENST00000568539 EN2P19622 333 aaPredicted RBP9.38□□□□□ -0.91
SF3B3-212ENST00000568539 CDK7P50613 346 aa9.38□□□□□ -0.91
SF3B3-212ENST00000568539 ZNF200P98182 395 aaPredicted RBP9.38□□□□□ -0.91
SF3B3-212ENST00000568539 DPYDQ12882 1025 aa9.38□□□□□ -0.91
SF3B3-212ENST00000568539 CUL4BQ13620 913 aa9.38□□□□□ -0.91
SF3B3-212ENST00000568539 CAMK4Q16566 473 aa9.38□□□□□ -0.91
SF3B3-212ENST00000568539 SKOR2Q2VWA4 1001 aaPredicted RBP9.38□□□□□ -0.91
SF3B3-212ENST00000568539 FAM47CQ5HY64 1035 aa9.38□□□□□ -0.91
SF3B3-212ENST00000568539 DYMQ7RTS9 669 aa9.38□□□□□ -0.91
SF3B3-212ENST00000568539 UBE2Q1Q7Z7E8 422 aa9.38□□□□□ -0.91
SF3B3-212ENST00000568539 DAW1Q8N136 415 aa9.38□□□□□ -0.91
SF3B3-212ENST00000568539 LINC01465Q8N7H1 131 aa9.38□□□□□ -0.91
SF3B3-212ENST00000568539 MCPH1Q8NEM0 835 aa9.38□□□□□ -0.91
SF3B3-212ENST00000568539 DNAJC19Q96DA6 116 aa9.38□□□□□ -0.91
SF3B3-212ENST00000568539 CCDC34Q96HJ3 373 aa9.38□□□□□ -0.91
SF3B3-212ENST00000568539 PAWRQ96IZ0 340 aaKnown RBP9.38□□□□□ -0.91
SF3B3-212ENST00000568539 CTAGE1Q96RT6 745 aa9.38□□□□□ -0.91
SF3B3-212ENST00000568539 JPH2Q9BR39 696 aaPredicted RBP9.38□□□□□ -0.91
SF3B3-212ENST00000568539 REEP2Q9BRK0 252 aa9.38□□□□□ -0.91
SF3B3-212ENST00000568539 NUP62CLQ9H1M0 184 aa9.38□□□□□ -0.91
SF3B3-212ENST00000568539 BLZF1Q9H2G9 400 aa9.38□□□□□ -0.91
SF3B3-212ENST00000568539 C11orf49Q9H6J7 331 aa9.38□□□□□ -0.91
SF3B3-212ENST00000568539 HOOK1Q9UJC3 728 aaKnown RBP9.38□□□□□ -0.91
SF3B3-212ENST00000568539 METRNQ9UJH8 293 aa9.38□□□□□ -0.91
SF3B3-212ENST00000568539 PCDHA2Q9Y5H9 948 aa9.38□□□□□ -0.91
SF3B3-212ENST00000568539 UNC80Q8N2C7 3258 aa9.38□□□□□ -0.91
SF3B3-212ENST00000568539 DOCK5Q9H7D0 1870 aa9.38□□□□□ -0.91
SF3B3-212ENST00000568539 SMIM35A0A1B0GVV1 85 aa9.37□□□□□ -0.91
SF3B3-212ENST00000568539 FRMD3A2A2Y4 597 aa9.37□□□□□ -0.91
SF3B3-212ENST00000568539 RSPH10B2B2RC85 870 aa9.37□□□□□ -0.91
SF3B3-212ENST00000568539 HIP1RO75146 1068 aa9.37□□□□□ -0.91
SF3B3-212ENST00000568539 KRT18P05783 430 aaKnown RBP9.37□□□□□ -0.91
SF3B3-212ENST00000568539 RSPH10BP0C881 870 aa9.37□□□□□ -0.91
SF3B3-212ENST00000568539 ARL2P36404 184 aa9.37□□□□□ -0.91
SF3B3-212ENST00000568539 CLCN3P51790 818 aa9.37□□□□□ -0.91
SF3B3-212ENST00000568539 ZNF131P52739 623 aa9.37□□□□□ -0.91
SF3B3-212ENST00000568539 RAD51AP2Q09MP3 1159 aa9.37□□□□□ -0.91
SF3B3-212ENST00000568539 DRP2Q13474 957 aa9.37□□□□□ -0.91
SF3B3-212ENST00000568539 PNOCQ13519 176 aa9.37□□□□□ -0.91
SF3B3-212ENST00000568539 SNX17Q15036 470 aa9.37□□□□□ -0.91
SF3B3-212ENST00000568539 PTGISQ16647 500 aa9.37□□□□□ -0.91
SF3B3-212ENST00000568539 FAM102BQ5T8I3 360 aa9.37□□□□□ -0.91
SF3B3-212ENST00000568539 C1orf53Q5VUE5 145 aa9.37□□□□□ -0.91
SF3B3-212ENST00000568539 IER5Q5VY09 327 aa9.37□□□□□ -0.91
SF3B3-212ENST00000568539 EFCAB12Q6NXP0 572 aa9.37□□□□□ -0.91
SF3B3-212ENST00000568539 SLC39A5Q6ZMH5 540 aa9.37□□□□□ -0.91
SF3B3-212ENST00000568539 RUFY4Q6ZNE9 571 aa9.37□□□□□ -0.91
SF3B3-212ENST00000568539 MAEAQ7L5Y9 396 aa9.37□□□□□ -0.91
SF3B3-212ENST00000568539 SERINC5Q86VE9 423 aa9.37□□□□□ -0.91
SF3B3-212ENST00000568539 LRRC71Q8N4P6 559 aa9.37□□□□□ -0.91
SF3B3-212ENST00000568539 RETREG2Q8NC44 543 aa9.37□□□□□ -0.91
SF3B3-212ENST00000568539 SPATA20Q8TB22 786 aa9.37□□□□□ -0.91
SF3B3-212ENST00000568539 KIFAP3Q92845 792 aa9.37□□□□□ -0.91
SF3B3-212ENST00000568539 TMEM143Q96AN5 459 aa9.37□□□□□ -0.91
SF3B3-212ENST00000568539 DRC1Q96MC2 740 aa9.37□□□□□ -0.91
SF3B3-212ENST00000568539 SUGCTQ9HAC7 445 aa9.37□□□□□ -0.91
SF3B3-212ENST00000568539 POLD4Q9HCU8 107 aa9.37□□□□□ -0.91
SF3B3-212ENST00000568539 GPRC5CQ9NQ84 441 aa9.37□□□□□ -0.91
SF3B3-212ENST00000568539 TRMT13Q9NUP7 481 aaKnown RBP9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms