RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 ITGB3BPQ13352 177 aaPredicted RBP18.43■□□□□ 0.54
CLK3-223ENST00000568488 GIT2Q14161 759 aa18.43■□□□□ 0.54
CLK3-223ENST00000568488 PDXDC2PQ6P474 469 aa18.43■□□□□ 0.54
CLK3-223ENST00000568488 RSAD2Q8WXG1 361 aa18.43■□□□□ 0.54
CLK3-223ENST00000568488 SFXN1Q9H9B4 322 aa18.43■□□□□ 0.54
CLK3-223ENST00000568488 AGO4Q9HCK5 861 aaKnown RBP18.43■□□□□ 0.54
CLK3-223ENST00000568488 ZNF302Q9NR11 478 aa18.43■□□□□ 0.54
CLK3-223ENST00000568488 IGSF9Q9P2J2 1179 aa18.43■□□□□ 0.54
CLK3-223ENST00000568488 WNT16Q9UBV4 365 aa18.43■□□□□ 0.54
CLK3-223ENST00000568488 COL1A2P08123 1366 aa18.42■□□□□ 0.54
CLK3-223ENST00000568488 EPG5Q9HCE0 2579 aa18.42■□□□□ 0.54
CLK3-223ENST00000568488 hCG_1642624A0A1W2PR95 340 aa18.42■□□□□ 0.54
CLK3-223ENST00000568488 ZC3H11AO75152 810 aaKnown RBP eCLIP18.42■□□□□ 0.54
CLK3-223ENST00000568488 DCNP07585 359 aaKnown RBP18.42■□□□□ 0.54
CLK3-223ENST00000568488 CTSAP10619 480 aa18.42■□□□□ 0.54
CLK3-223ENST00000568488 NLRP11P59045 1033 aaKnown RBP18.42■□□□□ 0.54
CLK3-223ENST00000568488 TBC1D8BQ0IIM8 1120 aa18.42■□□□□ 0.54
CLK3-223ENST00000568488 ZNF668Q96K58 619 aaPredicted RBP18.42■□□□□ 0.54
CLK3-223ENST00000568488 LZTS2Q9BRK4 669 aa18.42■□□□□ 0.54
CLK3-223ENST00000568488 MRPL9Q9BYD2 267 aaKnown RBP18.42■□□□□ 0.54
CLK3-223ENST00000568488 AKT3Q9Y243 479 aa18.42■□□□□ 0.54
CLK3-223ENST00000568488 U3KPZ7 1027 aaPredicted RBP18.42■□□□□ 0.54
CLK3-223ENST00000568488 EVPLQ92817 2033 aa18.42■□□□□ 0.54
CLK3-223ENST00000568488 IGKV6D-21A0A0A0MT36 114 aa18.41■□□□□ 0.54
CLK3-223ENST00000568488 PLEKHA8P1O95397 391 aa18.41■□□□□ 0.54
CLK3-223ENST00000568488 CCNE2O96020 404 aa18.41■□□□□ 0.54
CLK3-223ENST00000568488 SP9P0CG40 484 aa18.41■□□□□ 0.54
CLK3-223ENST00000568488 SMARCA1P28370 1054 aa18.41■□□□□ 0.54
CLK3-223ENST00000568488 GBP2P32456 591 aaPredicted RBP18.41■□□□□ 0.54
CLK3-223ENST00000568488 NONOQ15233 471 aaKnown RBP eCLIP18.41■□□□□ 0.545e-7■■□□□ 13.6
CLK3-223ENST00000568488 LETM2Q2VYF4 491 aa18.41■□□□□ 0.54
CLK3-223ENST00000568488 SWSAP1Q6NVH7 229 aa18.41■□□□□ 0.54
CLK3-223ENST00000568488 ABHD15Q6UXT9 468 aa18.41■□□□□ 0.54
CLK3-223ENST00000568488 PPFIBP1Q86W92 1011 aa18.41■□□□□ 0.54
CLK3-223ENST00000568488 TMEM173Q86WV6 379 aaPredicted RBP18.41■□□□□ 0.54
CLK3-223ENST00000568488 CCDC60Q8IWA6 550 aaPredicted RBP18.41■□□□□ 0.54
CLK3-223ENST00000568488 SRBD1Q8N5C6 995 aaKnown RBP18.41■□□□□ 0.54
CLK3-223ENST00000568488 NCOA7Q8NI08 942 aa18.41■□□□□ 0.54
CLK3-223ENST00000568488 TBC1D17Q9HA65 648 aa18.41■□□□□ 0.54
CLK3-223ENST00000568488 ZBTB42B2RXF5 422 aa18.4■□□□□ 0.54
CLK3-223ENST00000568488 C22orf31O95567 290 aa18.4■□□□□ 0.54
CLK3-223ENST00000568488 CYP21A2P08686 494 aa18.4■□□□□ 0.54
CLK3-223ENST00000568488 KLRC2P26717 231 aa18.4■□□□□ 0.54
CLK3-223ENST00000568488 GNAQP50148 359 aa18.4■□□□□ 0.54
CLK3-223ENST00000568488 CLCN3P51790 818 aa18.4■□□□□ 0.54
CLK3-223ENST00000568488 POLGP54098 1239 aaPredicted RBP18.4■□□□□ 0.54
CLK3-223ENST00000568488 CEP55Q53EZ4 464 aa18.4■□□□□ 0.54
CLK3-223ENST00000568488 PLEKHM2Q8IWE5 1019 aa18.4■□□□□ 0.54
CLK3-223ENST00000568488 ZNF654Q8IZM8 581 aa18.4■□□□□ 0.54
CLK3-223ENST00000568488 CCDC82Q8N4S0 544 aa18.4■□□□□ 0.54
CLK3-223ENST00000568488 IGDCC4Q8TDY8 1250 aa18.4■□□□□ 0.54
CLK3-223ENST00000568488 PGBD1Q96JS3 809 aa18.4■□□□□ 0.54
CLK3-223ENST00000568488 MAP3K14Q99558 947 aa18.4■□□□□ 0.54
CLK3-223ENST00000568488 IL25Q9H293 177 aa18.4■□□□□ 0.54
CLK3-223ENST00000568488 IRAK3Q9Y616 596 aa18.4■□□□□ 0.54
CLK3-223ENST00000568488 A0A0U1RQF3 1178 aa18.39■□□□□ 0.53
CLK3-223ENST00000568488 E7EWF7 191 aa18.39■□□□□ 0.53
CLK3-223ENST00000568488 ATP4AP20648 1035 aa18.39■□□□□ 0.53
CLK3-223ENST00000568488 FGFR4P22455 802 aa18.39■□□□□ 0.53
CLK3-223ENST00000568488 EIF4BP23588 611 aaKnown RBP18.39■□□□□ 0.53
CLK3-223ENST00000568488 ZNF76P36508 570 aa18.39■□□□□ 0.53
CLK3-223ENST00000568488 HDAC1Q13547 482 aaPredicted RBP18.39■□□□□ 0.53
CLK3-223ENST00000568488 MIS18BP1Q6P0N0 1132 aa18.39■□□□□ 0.53
CLK3-223ENST00000568488 HEATR3Q7Z4Q2 680 aa18.39■□□□□ 0.53
CLK3-223ENST00000568488 DDX53Q86TM3 631 aaKnown RBP18.39■□□□□ 0.53
CLK3-223ENST00000568488 C1orf210Q8IVY1 113 aa18.39■□□□□ 0.53
CLK3-223ENST00000568488 IGSF21Q96ID5 467 aa18.39■□□□□ 0.53
CLK3-223ENST00000568488 SIT1Q9Y3P8 196 aa18.39■□□□□ 0.53
CLK3-223ENST00000568488 KMT2BQ9UMN6 2715 aaPredicted RBP18.38■□□□□ 0.53
CLK3-223ENST00000568488 TPRP12270 2363 aaKnown RBP18.38■□□□□ 0.53
CLK3-223ENST00000568488 CEP250Q9BV73 2442 aa18.38■□□□□ 0.53
CLK3-223ENST00000568488 DDAH1O94760 285 aa18.38■□□□□ 0.53
CLK3-223ENST00000568488 SSBP05455 408 aaKnown RBP eCLIP18.38■□□□□ 0.53
CLK3-223ENST00000568488 LONRF3Q496Y0 759 aa18.38■□□□□ 0.53
CLK3-223ENST00000568488 NFXL1Q6ZNB6 911 aa18.38■□□□□ 0.53
CLK3-223ENST00000568488 ZNF598Q86UK7 904 aaKnown RBP18.38■□□□□ 0.53
CLK3-223ENST00000568488 SLC44A3Q8N4M1 653 aa18.38■□□□□ 0.53
CLK3-223ENST00000568488 SCLT1Q96NL6 688 aa18.38■□□□□ 0.53
CLK3-223ENST00000568488 MAP7D2Q96T17 732 aa18.38■□□□□ 0.53
CLK3-223ENST00000568488 EMILIN2Q9BXX0 1053 aa18.38■□□□□ 0.53
CLK3-223ENST00000568488 NCDNQ9UBB6 729 aa18.38■□□□□ 0.53
CLK3-223ENST00000568488 TAF6LQ9Y6J9 622 aa18.38■□□□□ 0.53
CLK3-223ENST00000568488 KINO60870 393 aaKnown RBP18.37■□□□□ 0.53
CLK3-223ENST00000568488 N4BP1O75113 896 aaKnown RBP18.37■□□□□ 0.53
CLK3-223ENST00000568488 RXRAP19793 462 aa18.37■□□□□ 0.53
CLK3-223ENST00000568488 ANTXR2P58335 489 aa18.37■□□□□ 0.53
CLK3-223ENST00000568488 PTPN14Q15678 1187 aa18.37■□□□□ 0.53
CLK3-223ENST00000568488 EFCAB12Q6NXP0 572 aa18.37■□□□□ 0.53
CLK3-223ENST00000568488 GPR152Q8TDT2 470 aa18.37■□□□□ 0.53
CLK3-223ENST00000568488 BCL7CQ8WUZ0 217 aaPredicted RBP18.37■□□□□ 0.53
CLK3-223ENST00000568488 BBXQ8WY36 941 aaPredicted RBP18.37■□□□□ 0.53
CLK3-223ENST00000568488 KLHL5Q96PQ7 755 aa18.37■□□□□ 0.53
CLK3-223ENST00000568488 GBP3Q9H0R5 595 aa18.37■□□□□ 0.53
CLK3-223ENST00000568488 ADAMTS10Q9H324 1103 aa18.37■□□□□ 0.53
CLK3-223ENST00000568488 OSBPL3Q9H4L5 887 aa18.37■□□□□ 0.53
CLK3-223ENST00000568488 DENND4AQ7Z401 1863 aa18.37■□□□□ 0.53
CLK3-223ENST00000568488 MEIS1O00470 390 aa18.36■□□□□ 0.53
CLK3-223ENST00000568488 GALTP07902 379 aa18.36■□□□□ 0.53
CLK3-223ENST00000568488 MYBP10242 640 aa18.36■□□□□ 0.53
CLK3-223ENST00000568488 SRFP11831 508 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms