RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 GLRX3O76003 335 aaKnown RBP4.26□□□□□ -1.73
VPS35-207ENST00000568191 JMJD7P0C870 316 aa4.26□□□□□ -1.73
VPS35-207ENST00000568191 ACRV1P26436 265 aa4.26□□□□□ -1.73
VPS35-207ENST00000568191 ACVRL1P37023 503 aa4.26□□□□□ -1.73
VPS35-207ENST00000568191 MECP2P51608 486 aaKnown RBP4.26□□□□□ -1.73
VPS35-207ENST00000568191 TGFB2P61812 414 aa4.26□□□□□ -1.73
VPS35-207ENST00000568191 PTH1RQ03431 593 aa4.26□□□□□ -1.73
VPS35-207ENST00000568191 FOXL1Q12952 345 aa4.26□□□□□ -1.73
VPS35-207ENST00000568191 CRHR2Q13324 411 aa4.26□□□□□ -1.73
VPS35-207ENST00000568191 ADAM15Q13444 863 aa4.26□□□□□ -1.73
VPS35-207ENST00000568191 SART3Q15020 963 aaKnown RBP4.26□□□□□ -1.73
VPS35-207ENST00000568191 EPHA7Q15375 998 aa4.26□□□□□ -1.73
VPS35-207ENST00000568191 TCEA2Q15560 299 aa4.26□□□□□ -1.73
VPS35-207ENST00000568191 LSM12Q3MHD2 195 aaKnown RBP4.26□□□□□ -1.73
VPS35-207ENST00000568191 MIIPQ5JXC2 388 aa4.26□□□□□ -1.73
VPS35-207ENST00000568191 PRAMEF9Q5VWM5 478 aa4.26□□□□□ -1.73
VPS35-207ENST00000568191 KRT40Q6A162 431 aa4.26□□□□□ -1.73
VPS35-207ENST00000568191 RTN4RL1Q86UN2 441 aaPredicted RBP4.26□□□□□ -1.73
VPS35-207ENST00000568191 HOMER1Q86YM7 354 aa4.26□□□□□ -1.73
VPS35-207ENST00000568191 PHYKPLQ8IUZ5 450 aa4.26□□□□□ -1.73
VPS35-207ENST00000568191 ZFPM1Q8IX07 1006 aa4.26□□□□□ -1.73
VPS35-207ENST00000568191 C7orf31Q8N865 590 aa4.26□□□□□ -1.73
VPS35-207ENST00000568191 SH3TC2Q8TF17 1288 aa4.26□□□□□ -1.73
VPS35-207ENST00000568191 TMEM176AQ96HP8 235 aa4.26□□□□□ -1.73
VPS35-207ENST00000568191 WDR92Q96MX6 357 aa4.26□□□□□ -1.73
VPS35-207ENST00000568191 PLEKHG4BQ96PX9 1271 aa4.26□□□□□ -1.73
VPS35-207ENST00000568191 TLR9Q9NR96 1032 aa4.26□□□□□ -1.73
VPS35-207ENST00000568191 PARPBPQ9NWS1 579 aa4.26□□□□□ -1.73
VPS35-207ENST00000568191 B4GALT6Q9UBX8 382 aa4.26□□□□□ -1.73
VPS35-207ENST00000568191 RCAN3Q9UKA8 241 aa4.26□□□□□ -1.73
VPS35-207ENST00000568191 ASMTLO95671 621 aa4.25□□□□□ -1.73
VPS35-207ENST00000568191 PRLP01236 227 aa4.25□□□□□ -1.73
VPS35-207ENST00000568191 NEK4P51957 841 aa4.25□□□□□ -1.73
VPS35-207ENST00000568191 BPIFB4P59827 614 aa4.25□□□□□ -1.73
VPS35-207ENST00000568191 ATP2C1P98194 919 aaPredicted RBP4.25□□□□□ -1.73
VPS35-207ENST00000568191 HGFACQ04756 655 aa4.25□□□□□ -1.73
VPS35-207ENST00000568191 RIN1Q13671 783 aa4.25□□□□□ -1.73
VPS35-207ENST00000568191 GAGE13Q4V321 117 aa4.25□□□□□ -1.73
VPS35-207ENST00000568191 TM4SF20Q53R12 229 aa4.25□□□□□ -1.73
VPS35-207ENST00000568191 CDCA2Q69YH5 1023 aaPredicted RBP4.25□□□□□ -1.73
VPS35-207ENST00000568191 Q6ZSN1 163 aa4.25□□□□□ -1.73
VPS35-207ENST00000568191 BMP8AQ7Z5Y6 402 aa4.25□□□□□ -1.73
VPS35-207ENST00000568191 KIF18BQ86Y91 864 aa4.25□□□□□ -1.73
VPS35-207ENST00000568191 ZNF808Q8N4W9 903 aaPredicted RBP4.25□□□□□ -1.73
VPS35-207ENST00000568191 OR5AN1Q8NGI8 311 aa4.25□□□□□ -1.73
VPS35-207ENST00000568191 CFHR4Q92496 578 aa4.25□□□□□ -1.73
VPS35-207ENST00000568191 EXTL1Q92935 676 aa4.25□□□□□ -1.73
VPS35-207ENST00000568191 FOXRED1Q96CU9 486 aaPredicted RBP4.25□□□□□ -1.73
VPS35-207ENST00000568191 DYDC2Q96IM9 177 aa4.25□□□□□ -1.73
VPS35-207ENST00000568191 CLUHP3Q96NS8 147 aa4.25□□□□□ -1.73
VPS35-207ENST00000568191 CTDP1Q9Y5B0 961 aaPredicted RBP4.25□□□□□ -1.73
VPS35-207ENST00000568191 RBM8AQ9Y5S9 174 aaKnown RBP4.25□□□□□ -1.73
VPS35-207ENST00000568191 NPIPB8E9PQR5 432 aa4.24□□□□□ -1.73
VPS35-207ENST00000568191 CBX4O00257 560 aa4.24□□□□□ -1.73
VPS35-207ENST00000568191 MFAP3LO75121 409 aa4.24□□□□□ -1.73
VPS35-207ENST00000568191 ZNF202O95125 648 aa4.24□□□□□ -1.73
VPS35-207ENST00000568191 APOL3O95236 402 aa4.24□□□□□ -1.73
VPS35-207ENST00000568191 JUNP05412 331 aaKnown RBP4.24□□□□□ -1.73
VPS35-207ENST00000568191 RGS3P49796 1198 aa4.24□□□□□ -1.73
VPS35-207ENST00000568191 ADCY7P51828 1080 aa4.24□□□□□ -1.73
VPS35-207ENST00000568191 OCRLQ01968 901 aa4.24□□□□□ -1.73
VPS35-207ENST00000568191 ADCY2Q08462 1091 aa4.24□□□□□ -1.73
VPS35-207ENST00000568191 TCIRG1Q13488 830 aa4.24□□□□□ -1.73
VPS35-207ENST00000568191 CNGB1Q14028 1251 aaPredicted RBP4.24□□□□□ -1.73
VPS35-207ENST00000568191 CCDC144BQ3MJ40 725 aa4.24□□□□□ -1.73
VPS35-207ENST00000568191 TAF7LQ5H9L4 462 aa4.24□□□□□ -1.73
VPS35-207ENST00000568191 FSTL4Q6MZW2 842 aa4.24□□□□□ -1.73
VPS35-207ENST00000568191 MFSD5Q6N075 450 aa4.24□□□□□ -1.73
VPS35-207ENST00000568191 GPR135Q8IZ08 494 aa4.24□□□□□ -1.73
VPS35-207ENST00000568191 AHI1Q8N157 1196 aa4.24□□□□□ -1.73
VPS35-207ENST00000568191 ARL8AQ96BM9 186 aa4.24□□□□□ -1.73
VPS35-207ENST00000568191 MIEF2Q96C03 454 aa4.24□□□□□ -1.73
VPS35-207ENST00000568191 ZNF503Q96F45 646 aa4.24□□□□□ -1.73
VPS35-207ENST00000568191 TOMM22Q9NS69 142 aa4.24□□□□□ -1.73
VPS35-207ENST00000568191 POLR3BQ9NW08 1133 aaPredicted RBP4.24□□□□□ -1.73
VPS35-207ENST00000568191 TMEM260Q9NX78 707 aa4.24□□□□□ -1.73
VPS35-207ENST00000568191 SPO11Q9Y5K1 396 aa4.24□□□□□ -1.73
VPS35-207ENST00000568191 TRAF5O00463 557 aa4.23□□□□□ -1.73
VPS35-207ENST00000568191 SUV39H1O43463 412 aa4.23□□□□□ -1.73
VPS35-207ENST00000568191 DNAJC8O75937 253 aaPredicted RBP4.23□□□□□ -1.73
VPS35-207ENST00000568191 FSBPO95073 299 aa4.23□□□□□ -1.73
VPS35-207ENST00000568191 ADH4P08319 380 aa4.23□□□□□ -1.73
VPS35-207ENST00000568191 MAKP20794 623 aa4.23□□□□□ -1.73
VPS35-207ENST00000568191 CD40P25942 277 aa4.23□□□□□ -1.73
VPS35-207ENST00000568191 DUSP8Q13202 625 aa4.23□□□□□ -1.73
VPS35-207ENST00000568191 PABPC4Q13310 644 aaKnown RBP eCLIP4.23□□□□□ -1.73
VPS35-207ENST00000568191 SQSTM1Q13501 440 aa4.23□□□□□ -1.73
VPS35-207ENST00000568191 FHL2Q14192 279 aa4.23□□□□□ -1.73
VPS35-207ENST00000568191 FAM111BQ6SJ93 734 aa4.23□□□□□ -1.73
VPS35-207ENST00000568191 Q8N1X5 172 aa4.23□□□□□ -1.73
VPS35-207ENST00000568191 ANKRD53Q8N9V6 530 aa4.23□□□□□ -1.73
VPS35-207ENST00000568191 PLA2G15Q8NCC3 412 aa4.23□□□□□ -1.73
VPS35-207ENST00000568191 APPBP2Q92624 585 aa4.23□□□□□ -1.73
VPS35-207ENST00000568191 HIST1H2AHQ96KK5 128 aa4.23□□□□□ -1.73
VPS35-207ENST00000568191 RPL10LQ96L21 214 aaKnown RBP4.23□□□□□ -1.73
VPS35-207ENST00000568191 C16orf92Q96LL3 132 aa4.23□□□□□ -1.73
VPS35-207ENST00000568191 HIST1H2AJQ99878 128 aa4.23□□□□□ -1.73
VPS35-207ENST00000568191 TCF25Q9BQ70 676 aa4.23□□□□□ -1.73
VPS35-207ENST00000568191 SCAND2PQ9GZW5 306 aaPredicted RBP4.23□□□□□ -1.73
VPS35-207ENST00000568191 C14orf93Q9H972 538 aaKnown RBP4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms