RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 RNF216Q9NWF9 866 aaPredicted RBP22.16■■□□□ 1.14
CLN3-230ENST00000568076 LARSQ9P2J5 1176 aaKnown RBP22.16■■□□□ 1.14
CLN3-230ENST00000568076 FRMD4BQ9Y2L6 1034 aa22.16■■□□□ 1.14
CLN3-230ENST00000568076 MYH10P35580 1976 aa22.16■■□□□ 1.14
CLN3-230ENST00000568076 PHIPQ8WWQ0 1821 aa22.16■■□□□ 1.14
CLN3-230ENST00000568076 TISP43B9A030 160 aa22.16■■□□□ 1.14
CLN3-230ENST00000568076 TRIM49P0CI25 452 aa22.16■■□□□ 1.14
CLN3-230ENST00000568076 TRIM49CP0CI26 452 aa22.16■■□□□ 1.14
CLN3-230ENST00000568076 PLS3P13797 630 aa22.16■■□□□ 1.14
CLN3-230ENST00000568076 PRKCIP41743 596 aa22.16■■□□□ 1.14
CLN3-230ENST00000568076 VSIG10LQ86VR7 867 aa22.16■■□□□ 1.14
CLN3-230ENST00000568076 SYCP3Q8IZU3 236 aa22.16■■□□□ 1.14
CLN3-230ENST00000568076 GOLGA5Q8TBA6 731 aa22.16■■□□□ 1.14
CLN3-230ENST00000568076 CAGE1Q8TC20 777 aa22.16■■□□□ 1.14
CLN3-230ENST00000568076 KLRG1Q96E93 195 aa22.16■■□□□ 1.14
CLN3-230ENST00000568076 OSBPL9Q96SU4 736 aa22.16■■□□□ 1.14
CLN3-230ENST00000568076 TLR10Q9BXR5 811 aa22.16■■□□□ 1.14
CLN3-230ENST00000568076 UBXN6Q9BZV1 441 aa22.16■■□□□ 1.14
CLN3-230ENST00000568076 SSC5DA1L4H1 1573 aa22.15■■□□□ 1.14
CLN3-230ENST00000568076 MAPTP10636 758 aaKnown RBP22.15■■□□□ 1.14
CLN3-230ENST00000568076 WDR93Q6P2C0 686 aa22.15■■□□□ 1.14
CLN3-230ENST00000568076 CCDC125Q86Z20 511 aa22.15■■□□□ 1.14
CLN3-230ENST00000568076 LUC7LQ9NQ29 371 aaKnown RBP22.15■■□□□ 1.14
CLN3-230ENST00000568076 GGA3Q9NZ52 723 aa22.15■■□□□ 1.14
CLN3-230ENST00000568076 BZW2Q9Y6E2 419 aaKnown RBP22.15■■□□□ 1.14
CLN3-230ENST00000568076 WDR64B1ANS9 1081 aa22.14■■□□□ 1.14
CLN3-230ENST00000568076 MAP2K7O14733 419 aa22.14■■□□□ 1.14
CLN3-230ENST00000568076 NR3C2P08235 984 aa22.14■■□□□ 1.14
CLN3-230ENST00000568076 JAK3P52333 1124 aa22.14■■□□□ 1.14
CLN3-230ENST00000568076 HIRAP54198 1017 aaPredicted RBP22.14■■□□□ 1.14
CLN3-230ENST00000568076 PSMC5P62195 406 aa22.14■■□□□ 1.14
CLN3-230ENST00000568076 TMEM132BQ14DG7 1078 aa22.14■■□□□ 1.14
CLN3-230ENST00000568076 KIAA0753Q2KHM9 967 aa22.14■■□□□ 1.14
CLN3-230ENST00000568076 TRMT1LQ7Z2T5 733 aaKnown RBP22.14■■□□□ 1.14
CLN3-230ENST00000568076 PSMB7Q99436 277 aa22.14■■□□□ 1.14
CLN3-230ENST00000568076 GPRC5CQ9NQ84 441 aa22.14■■□□□ 1.14
CLN3-230ENST00000568076 HYOU1Q9Y4L1 999 aa22.14■■□□□ 1.14
CLN3-230ENST00000568076 EXOC3O60645 756 aa22.14■■□□□ 1.13
CLN3-230ENST00000568076 CXCR5P32302 372 aa22.14■■□□□ 1.13
CLN3-230ENST00000568076 NAP1L1P55209 391 aaKnown RBP22.14■■□□□ 1.13
CLN3-230ENST00000568076 KRT76Q01546 638 aa22.14■■□□□ 1.13
CLN3-230ENST00000568076 PPP2R5AQ15172 486 aa22.14■■□□□ 1.13
CLN3-230ENST00000568076 PLA2G4FQ68DD2 849 aa22.14■■□□□ 1.13
CLN3-230ENST00000568076 ZNF572Q7Z3I7 529 aaPredicted RBP22.14■■□□□ 1.13
CLN3-230ENST00000568076 RDH13Q8NBN7 331 aa22.14■■□□□ 1.13
CLN3-230ENST00000568076 SUGCTQ9HAC7 445 aa22.14■■□□□ 1.13
CLN3-230ENST00000568076 GPRC5DQ9NZD1 345 aa22.14■■□□□ 1.13
CLN3-230ENST00000568076 L1RE1Q9UN81 338 aa22.14■■□□□ 1.13
CLN3-230ENST00000568076 PALMO75781 387 aa22.13■■□□□ 1.13
CLN3-230ENST00000568076 RGS20O76081 388 aa22.13■■□□□ 1.13
CLN3-230ENST00000568076 CCND2P30279 289 aa22.13■■□□□ 1.13
CLN3-230ENST00000568076 SFNP31947 248 aa22.13■■□□□ 1.13
CLN3-230ENST00000568076 OAZ1P54368 228 aa22.13■■□□□ 1.13
CLN3-230ENST00000568076 NPEPPSP55786 919 aa22.13■■□□□ 1.13
CLN3-230ENST00000568076 C2orf54Q08AI8 447 aa22.13■■□□□ 1.13
CLN3-230ENST00000568076 BFSP1Q12934 665 aa22.13■■□□□ 1.13
CLN3-230ENST00000568076 MYBPC2Q14324 1141 aa22.13■■□□□ 1.13
CLN3-230ENST00000568076 XRRA1Q6P2D8 792 aa22.13■■□□□ 1.13
CLN3-230ENST00000568076 PCIF1Q9H4Z3 704 aa22.13■■□□□ 1.13
CLN3-230ENST00000568076 NENFQ9UMX5 172 aa22.13■■□□□ 1.13
CLN3-230ENST00000568076 C19orf81C9J6K1 198 aa22.12■■□□□ 1.13
CLN3-230ENST00000568076 TCP1P17987 556 aaKnown RBP22.12■■□□□ 1.13
CLN3-230ENST00000568076 CATSPERGQ6ZRH7 1159 aa22.12■■□□□ 1.13
CLN3-230ENST00000568076 DNAAF5Q86Y56 855 aa22.12■■□□□ 1.13
CLN3-230ENST00000568076 INPP4AQ96PE3 977 aaPredicted RBP22.12■■□□□ 1.13
CLN3-230ENST00000568076 ACCSQ96QU6 501 aa22.12■■□□□ 1.13
CLN3-230ENST00000568076 TMEM206Q9H813 350 aa22.12■■□□□ 1.13
CLN3-230ENST00000568076 NAGPAQ9UK23 515 aa22.12■■□□□ 1.13
CLN3-230ENST00000568076 PCDHGC5Q9Y5F6 944 aa22.12■■□□□ 1.13
CLN3-230ENST00000568076 ERLIN1O75477 346 aa22.12■■□□□ 1.13
CLN3-230ENST00000568076 TUBBP07437 444 aa22.12■■□□□ 1.13
CLN3-230ENST00000568076 GTF2BQ00403 316 aa22.12■■□□□ 1.13
CLN3-230ENST00000568076 ALCAMQ13740 583 aa22.12■■□□□ 1.13
CLN3-230ENST00000568076 OLIG1Q8TAK6 271 aa22.12■■□□□ 1.13
CLN3-230ENST00000568076 UBE2Q2Q8WVN8 375 aa22.12■■□□□ 1.13
CLN3-230ENST00000568076 GPRASP2Q96D09 838 aa22.12■■□□□ 1.13
CLN3-230ENST00000568076 CBWD1Q9BRT8 395 aa22.12■■□□□ 1.13
CLN3-230ENST00000568076 ST6GALNAC4Q9H4F1 302 aa22.12■■□□□ 1.13
CLN3-230ENST00000568076 SMARCAL1Q9NZC9 954 aa22.12■■□□□ 1.13
CLN3-230ENST00000568076 EHD2Q9NZN4 543 aa22.12■■□□□ 1.13
CLN3-230ENST00000568076 DLG4P78352 724 aa22.11■■□□□ 1.13
CLN3-230ENST00000568076 GABPB1Q06547 395 aaPredicted RBP22.11■■□□□ 1.13
CLN3-230ENST00000568076 ANO5Q75V66 913 aa22.11■■□□□ 1.13
CLN3-230ENST00000568076 HAUS6Q7Z4H7 955 aa22.11■■□□□ 1.13
CLN3-230ENST00000568076 TMEM174Q8WUU8 243 aa22.11■■□□□ 1.13
CLN3-230ENST00000568076 CCDC43Q96MW1 224 aaKnown RBP22.11■■□□□ 1.13
CLN3-230ENST00000568076 MOV10L1Q9BXT6 1211 aaKnown RBP22.11■■□□□ 1.13
CLN3-230ENST00000568076 GPR88Q9GZN0 384 aa22.11■■□□□ 1.13
CLN3-230ENST00000568076 INTS2Q9H0H0 1204 aaKnown RBP22.11■■□□□ 1.13
CLN3-230ENST00000568076 ANKEF1Q9NU02 776 aa22.11■■□□□ 1.13
CLN3-230ENST00000568076 TELO2Q9Y4R8 837 aa22.11■■□□□ 1.13
CLN3-230ENST00000568076 BTNL10A8MVZ5 291 aa22.1■■□□□ 1.13
CLN3-230ENST00000568076 F8VZ95 297 aa22.1■■□□□ 1.13
CLN3-230ENST00000568076 ATP2A1O14983 1001 aa22.1■■□□□ 1.13
CLN3-230ENST00000568076 GFPT2O94808 682 aa22.1■■□□□ 1.13
CLN3-230ENST00000568076 KCNA2P16389 499 aa22.1■■□□□ 1.13
CLN3-230ENST00000568076 XKR9Q5GH70 373 aa22.1■■□□□ 1.13
CLN3-230ENST00000568076 C10orf76Q5T2E6 689 aa22.1■■□□□ 1.13
CLN3-230ENST00000568076 ZNF746Q6NUN9 644 aaPredicted RBP22.1■■□□□ 1.13
CLN3-230ENST00000568076 C12orf56Q8IXR9 622 aa22.1■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms