RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 ODR4Q5SWX8 454 aa12.17□□□□□ -0.46
VPS39-208ENST00000564994 PLA2G4FQ68DD2 849 aa12.17□□□□□ -0.46
VPS39-208ENST00000564994 FAM43BQ6ZT52 329 aaPredicted RBP12.17□□□□□ -0.46
VPS39-208ENST00000564994 ANO5Q75V66 913 aa12.17□□□□□ -0.46
VPS39-208ENST00000564994 POTEDQ86YR6 584 aa12.17□□□□□ -0.46
VPS39-208ENST00000564994 NEK9Q8TD19 979 aa12.17□□□□□ -0.46
VPS39-208ENST00000564994 WASF1Q92558 559 aa12.17□□□□□ -0.46
VPS39-208ENST00000564994 P2RX5Q93086 422 aa12.17□□□□□ -0.46
VPS39-208ENST00000564994 FAM20AQ96MK3 541 aa12.17□□□□□ -0.46
VPS39-208ENST00000564994 LMAN2LQ9H0V9 348 aa12.17□□□□□ -0.46
VPS39-208ENST00000564994 TBKBP1A7MCY6 615 aa12.16□□□□□ -0.46
VPS39-208ENST00000564994 DDX11L8A8MPP1 907 aa12.16□□□□□ -0.46
VPS39-208ENST00000564994 H3BQ06 376 aaPredicted RBP12.16□□□□□ -0.46
VPS39-208ENST00000564994 WNT7AO00755 349 aa12.16□□□□□ -0.46
VPS39-208ENST00000564994 CENPBP07199 599 aaPredicted RBP12.16□□□□□ -0.46
VPS39-208ENST00000564994 FGFR1P11362 822 aa12.16□□□□□ -0.46
VPS39-208ENST00000564994 DARSP14868 501 aaKnown RBP12.16□□□□□ -0.46
VPS39-208ENST00000564994 KRT2P35908 639 aa12.16□□□□□ -0.46
VPS39-208ENST00000564994 QARSP47897 775 aaKnown RBP12.16□□□□□ -0.46
VPS39-208ENST00000564994 PSMC5P62195 406 aa12.16□□□□□ -0.46
VPS39-208ENST00000564994 SPIRE1Q08AE8 756 aa12.16□□□□□ -0.46
VPS39-208ENST00000564994 HYAL1Q12794 435 aa12.16□□□□□ -0.46
VPS39-208ENST00000564994 ZNF579Q8NAF0 562 aaKnown RBP12.16□□□□□ -0.46
VPS39-208ENST00000564994 KLHL23Q8NBE8 558 aa12.16□□□□□ -0.46
VPS39-208ENST00000564994 SPPL3Q8TCT6 385 aa12.16□□□□□ -0.46
VPS39-208ENST00000564994 PABPC5Q96DU9 382 aaKnown RBP12.16□□□□□ -0.46
VPS39-208ENST00000564994 RNF19AQ9NV58 838 aa12.16□□□□□ -0.46
VPS39-208ENST00000564994 TMEM161AQ9NX61 479 aa12.16□□□□□ -0.46
VPS39-208ENST00000564994 A0A087WZ62 844 aa12.15□□□□□ -0.46
VPS39-208ENST00000564994 BTBD18B2RXH4 712 aa12.15□□□□□ -0.46
VPS39-208ENST00000564994 TBX3O15119 743 aa12.15□□□□□ -0.46
VPS39-208ENST00000564994 MAFO75444 373 aaPredicted RBP12.15□□□□□ -0.46
VPS39-208ENST00000564994 CSDE1O75534 798 aaKnown RBP12.15□□□□□ -0.46
VPS39-208ENST00000564994 IL9P15248 144 aa12.15□□□□□ -0.46
VPS39-208ENST00000564994 GTF2F1P35269 517 aaKnown RBP eCLIP12.15□□□□□ -0.46
VPS39-208ENST00000564994 IRS1P35568 1242 aa12.15□□□□□ -0.46
VPS39-208ENST00000564994 LTBRP36941 435 aa12.15□□□□□ -0.46
VPS39-208ENST00000564994 FOSBP53539 338 aa12.15□□□□□ -0.46
VPS39-208ENST00000564994 NPEPPSP55786 919 aa12.15□□□□□ -0.46
VPS39-208ENST00000564994 CTC1Q2NKJ3 1217 aa12.15□□□□□ -0.46
VPS39-208ENST00000564994 NAALADL2Q58DX5 795 aa12.15□□□□□ -0.46
VPS39-208ENST00000564994 KSR1Q8IVT5 923 aa12.15□□□□□ -0.46
VPS39-208ENST00000564994 ZNF710Q8N1W2 664 aa12.15□□□□□ -0.46
VPS39-208ENST00000564994 NLRP7Q8WX94 980 aa12.15□□□□□ -0.46
VPS39-208ENST00000564994 FDXACB1Q9BRP7 624 aaPredicted RBP12.15□□□□□ -0.46
VPS39-208ENST00000564994 CWH43Q9H720 699 aa12.15□□□□□ -0.46
VPS39-208ENST00000564994 ELAC1Q9H777 363 aaKnown RBP12.15□□□□□ -0.46
VPS39-208ENST00000564994 ATP6V0A4Q9HBG4 840 aa12.15□□□□□ -0.46
VPS39-208ENST00000564994 CD320Q9NPF0 282 aa12.15□□□□□ -0.46
VPS39-208ENST00000564994 CYP26B1Q9NR63 512 aa12.15□□□□□ -0.46
VPS39-208ENST00000564994 RGL1Q9NZL6 768 aa12.15□□□□□ -0.46
VPS39-208ENST00000564994 EIF5BO60841 1220 aaKnown RBP12.14□□□□□ -0.47
VPS39-208ENST00000564994 P4HBP07237 508 aaKnown RBP12.14□□□□□ -0.47
VPS39-208ENST00000564994 ZSCAN20P17040 1043 aaPredicted RBP12.14□□□□□ -0.47
VPS39-208ENST00000564994 DLX2Q07687 328 aaPredicted RBP12.14□□□□□ -0.47
VPS39-208ENST00000564994 EPHA7Q15375 998 aa12.14□□□□□ -0.47
VPS39-208ENST00000564994 NCAPH2Q6IBW4 605 aa12.14□□□□□ -0.47
VPS39-208ENST00000564994 PTCRAQ6ISU1 281 aaPredicted RBP12.14□□□□□ -0.47
VPS39-208ENST00000564994 LRRC55Q6ZSA7 311 aa12.14□□□□□ -0.47
VPS39-208ENST00000564994 ECHDC2Q86YB7 292 aa12.14□□□□□ -0.47
VPS39-208ENST00000564994 DIS3L2Q8IYB7 885 aaKnown RBP12.14□□□□□ -0.47
VPS39-208ENST00000564994 POF1BQ8WVV4 589 aa12.14□□□□□ -0.47
VPS39-208ENST00000564994 KHSRPQ92945 711 aaKnown RBP eCLIP12.14□□□□□ -0.47
VPS39-208ENST00000564994 SCLT1Q96NL6 688 aa12.14□□□□□ -0.47
VPS39-208ENST00000564994 CASD1Q96PB1 797 aa12.14□□□□□ -0.47
VPS39-208ENST00000564994 KIF2CQ99661 725 aa12.14□□□□□ -0.47
VPS39-208ENST00000564994 NAP1L4Q99733 375 aaKnown RBP12.14□□□□□ -0.47
VPS39-208ENST00000564994 TYW1Q9NV66 732 aaKnown RBP12.14□□□□□ -0.47
VPS39-208ENST00000564994 CLDND1Q9NY35 253 aa12.14□□□□□ -0.47
VPS39-208ENST00000564994 SUCLA2Q9P2R7 463 aaPredicted RBP12.14□□□□□ -0.47
VPS39-208ENST00000564994 PCDHGC5Q9Y5F6 944 aa12.14□□□□□ -0.47
VPS39-208ENST00000564994 A0A0U1RQF3 1178 aa12.13□□□□□ -0.47
VPS39-208ENST00000564994 GRXCR2A6NFK2 248 aa12.13□□□□□ -0.47
VPS39-208ENST00000564994 ZBTB39O15060 712 aa12.13□□□□□ -0.47
VPS39-208ENST00000564994 LINC01565O15544 149 aa12.13□□□□□ -0.47
VPS39-208ENST00000564994 MARCH6O60337 910 aa12.13□□□□□ -0.47
VPS39-208ENST00000564994 ATF7P17544 494 aaPredicted RBP12.13□□□□□ -0.47
VPS39-208ENST00000564994 CYP4A11Q02928 519 aa12.13□□□□□ -0.47
VPS39-208ENST00000564994 CTTNQ14247 550 aaKnown RBP12.13□□□□□ -0.47
VPS39-208ENST00000564994 C8orf34Q49A92 452 aa12.13□□□□□ -0.47
VPS39-208ENST00000564994 CLLU1OSQ5K130 101 aa12.13□□□□□ -0.47
VPS39-208ENST00000564994 SPOUT1Q5T280 376 aaKnown RBP12.13□□□□□ -0.47
VPS39-208ENST00000564994 EP400NLQ6ZTU2 488 aa12.13□□□□□ -0.47
VPS39-208ENST00000564994 ADGRD2Q7Z7M1 963 aa12.13□□□□□ -0.47
VPS39-208ENST00000564994 ZNF598Q86UK7 904 aaKnown RBP12.13□□□□□ -0.47
VPS39-208ENST00000564994 RHPN2Q8IUC4 686 aa12.13□□□□□ -0.47
VPS39-208ENST00000564994 FAM178BQ8IXR5 827 aa12.13□□□□□ -0.47
VPS39-208ENST00000564994 C4orf19Q8IY42 314 aa12.13□□□□□ -0.47
VPS39-208ENST00000564994 COLGALT1Q8NBJ5 622 aa12.13□□□□□ -0.47
VPS39-208ENST00000564994 DYDC2Q96IM9 177 aa12.13□□□□□ -0.47
VPS39-208ENST00000564994 LXNQ9BS40 222 aa12.13□□□□□ -0.47
VPS39-208ENST00000564994 GCOM2Q9BZD3 368 aaPredicted RBP12.13□□□□□ -0.47
VPS39-208ENST00000564994 BRMS1Q9HCU9 246 aa12.13□□□□□ -0.47
VPS39-208ENST00000564994 RNF216Q9NWF9 866 aaPredicted RBP12.13□□□□□ -0.47
VPS39-208ENST00000564994 LIMCH1Q9UPQ0 1083 aa12.13□□□□□ -0.47
VPS39-208ENST00000564994 DKC1O60832 514 aaKnown RBP eCLIP12.12□□□□□ -0.47
VPS39-208ENST00000564994 TBX10O75333 385 aa12.12□□□□□ -0.47
VPS39-208ENST00000564994 SLITRK3O94933 977 aa12.12□□□□□ -0.47
VPS39-208ENST00000564994 YWHABP31946 246 aaKnown RBP12.12□□□□□ -0.47
VPS39-208ENST00000564994 DNM2P50570 870 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms