RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 DRAP1Q14919 205 aaPredicted RBP14.34□□□□□ -0.11
CLN3-210ENST00000563874 FAM196AQ6ZSG2 479 aa14.34□□□□□ -0.11
CLN3-210ENST00000563874 CERS5Q8N5B7 392 aa14.34□□□□□ -0.11
CLN3-210ENST00000563874 ERMNQ8TAM6 284 aa14.34□□□□□ -0.11
CLN3-210ENST00000563874 MYCBPQ99417 103 aaPredicted RBP14.34□□□□□ -0.11
CLN3-210ENST00000563874 PSMD1Q99460 953 aa14.34□□□□□ -0.11
CLN3-210ENST00000563874 HAUS2Q9NVX0 235 aa14.34□□□□□ -0.11
CLN3-210ENST00000563874 NHSQ6T4R5 1651 aa14.34□□□□□ -0.11
CLN3-210ENST00000563874 TGFB1I1O43294 461 aa14.33□□□□□ -0.11
CLN3-210ENST00000563874 TRIM49P0CI25 452 aa14.33□□□□□ -0.11
CLN3-210ENST00000563874 TRIM49CP0CI26 452 aa14.33□□□□□ -0.11
CLN3-210ENST00000563874 SMTNP53814 917 aa14.33□□□□□ -0.11
CLN3-210ENST00000563874 PLTPP55058 493 aa14.33□□□□□ -0.11
CLN3-210ENST00000563874 TCP10Q12799 353 aa14.33□□□□□ -0.11
CLN3-210ENST00000563874 IKQ13123 557 aaPredicted RBP14.33□□□□□ -0.11
CLN3-210ENST00000563874 ARHGAP44Q17R89 818 aa14.33□□□□□ -0.11
CLN3-210ENST00000563874 UBAP2Q5T6F2 1119 aaKnown RBP14.33□□□□□ -0.11
CLN3-210ENST00000563874 CACNA2D3Q8IZS8 1091 aa14.33□□□□□ -0.11
CLN3-210ENST00000563874 DNAJC12Q9UKB3 198 aa14.33□□□□□ -0.11
CLN3-210ENST00000563874 SNX24Q9Y343 169 aa14.33□□□□□ -0.11
CLN3-210ENST00000563874 EML1O00423 815 aa14.33□□□□□ -0.12
CLN3-210ENST00000563874 CHMP2AO43633 222 aa14.33□□□□□ -0.12
CLN3-210ENST00000563874 LRRN2O75325 713 aa14.33□□□□□ -0.12
CLN3-210ENST00000563874 RASSF9O75901 435 aa14.33□□□□□ -0.12
CLN3-210ENST00000563874 DR1Q01658 176 aa14.33□□□□□ -0.12
CLN3-210ENST00000563874 POU5F1Q01860 360 aaKnown RBP14.33□□□□□ -0.12
CLN3-210ENST00000563874 CTTNQ14247 550 aaKnown RBP14.33□□□□□ -0.12
CLN3-210ENST00000563874 AGBL2Q5U5Z8 902 aa14.33□□□□□ -0.12
CLN3-210ENST00000563874 FAM186BQ8IYM0 893 aa14.33□□□□□ -0.12
CLN3-210ENST00000563874 RDH13Q8NBN7 331 aa14.33□□□□□ -0.12
CLN3-210ENST00000563874 OLIG1Q8TAK6 271 aa14.33□□□□□ -0.12
CLN3-210ENST00000563874 CTNNBL1Q8WYA6 563 aaPredicted RBP14.33□□□□□ -0.12
CLN3-210ENST00000563874 LENG9Q96B70 501 aa14.33□□□□□ -0.12
CLN3-210ENST00000563874 NAP1L4Q99733 375 aaKnown RBP14.33□□□□□ -0.12
CLN3-210ENST00000563874 THAP2Q9H0W7 228 aa14.33□□□□□ -0.12
CLN3-210ENST00000563874 METTL14Q9HCE5 456 aaKnown RBP14.33□□□□□ -0.12
CLN3-210ENST00000563874 FAM114A2Q9NRY5 505 aa14.33□□□□□ -0.12
CLN3-210ENST00000563874 ARFGEF1Q9Y6D6 1849 aa14.33□□□□□ -0.12
CLN3-210ENST00000563874 EEF2P13639 858 aaKnown RBP14.33□□□□□ -0.12
CLN3-210ENST00000563874 KRT13P13646 458 aa14.33□□□□□ -0.12
CLN3-210ENST00000563874 FERP16591 822 aa14.33□□□□□ -0.12
CLN3-210ENST00000563874 MAP2K2P36507 400 aa14.33□□□□□ -0.12
CLN3-210ENST00000563874 CYP2J2P51589 502 aa14.33□□□□□ -0.12
CLN3-210ENST00000563874 CDR1P51861 262 aa14.33□□□□□ -0.12
CLN3-210ENST00000563874 MYCT1Q8N699 235 aa14.33□□□□□ -0.12
CLN3-210ENST00000563874 ZKSCAN4Q969J2 545 aaPredicted RBP14.33□□□□□ -0.12
CLN3-210ENST00000563874 SELENOSQ9BQE4 189 aa14.33□□□□□ -0.12
CLN3-210ENST00000563874 GEMIN8Q9NWZ8 242 aaKnown RBP14.33□□□□□ -0.12
CLN3-210ENST00000563874 COL24A1Q17RW2 1714 aa14.32□□□□□ -0.12
CLN3-210ENST00000563874 MYO3BQ8WXR4 1341 aa14.32□□□□□ -0.12
CLN3-210ENST00000563874 CYP3A7-CYP3A51PA0A087WV96 503 aa14.32□□□□□ -0.12
CLN3-210ENST00000563874 A0A0A6YYK5 440 aaPredicted RBP14.32□□□□□ -0.12
CLN3-210ENST00000563874 MSH4O15457 936 aa14.32□□□□□ -0.12
CLN3-210ENST00000563874 DDX3YO15523 660 aaKnown RBP14.32□□□□□ -0.12
CLN3-210ENST00000563874 CTNND1O60716 968 aaKnown RBP14.32□□□□□ -0.12
CLN3-210ENST00000563874 CYP3A7P24462 503 aa14.32□□□□□ -0.12
CLN3-210ENST00000563874 SOX5P35711 763 aa14.32□□□□□ -0.12
CLN3-210ENST00000563874 CBWD6Q4V339 395 aa14.32□□□□□ -0.12
CLN3-210ENST00000563874 ANKRD20A8PQ5CZ79 823 aa14.32□□□□□ -0.12
CLN3-210ENST00000563874 CBWD3Q5JTY5 395 aa14.32□□□□□ -0.12
CLN3-210ENST00000563874 CBWD5Q5RIA9 395 aa14.32□□□□□ -0.12
CLN3-210ENST00000563874 ALG3Q92685 438 aa14.32□□□□□ -0.12
CLN3-210ENST00000563874 RABGAP1Q9Y3P9 1069 aa14.32□□□□□ -0.12
CLN3-210ENST00000563874 TMEM110-MUSTN1A8MSY1 372 aa14.32□□□□□ -0.12
CLN3-210ENST00000563874 GKAP1Q5VSY0 366 aaPredicted RBP14.32□□□□□ -0.12
CLN3-210ENST00000563874 SLFN13Q68D06 897 aa14.32□□□□□ -0.12
CLN3-210ENST00000563874 SLC30A5Q8TAD4 765 aa14.32□□□□□ -0.12
CLN3-210ENST00000563874 RFFLQ8WZ73 363 aa14.32□□□□□ -0.12
CLN3-210ENST00000563874 SEC14L1Q92503 715 aa14.32□□□□□ -0.12
CLN3-210ENST00000563874 TATDN2Q93075 761 aa14.32□□□□□ -0.12
CLN3-210ENST00000563874 DOK7Q18PE1 504 aa14.31□□□□□ -0.12
CLN3-210ENST00000563874 CEP57Q86XR8 500 aa14.31□□□□□ -0.12
CLN3-210ENST00000563874 TPH2Q8IWU9 490 aa14.31□□□□□ -0.12
CLN3-210ENST00000563874 FBXO25Q8TCJ0 367 aa14.31□□□□□ -0.12
CLN3-210ENST00000563874 C18orf8Q96DM3 657 aa14.31□□□□□ -0.12
CLN3-210ENST00000563874 EIF2AK1Q9BQI3 630 aaKnown RBP14.31□□□□□ -0.12
CLN3-210ENST00000563874 DNAJC18Q9H819 358 aa14.31□□□□□ -0.12
CLN3-210ENST00000563874 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.31□□□□□ -0.126e-9■■■■■ 134.6
CLN3-210ENST00000563874 GGA2Q9UJY4 613 aa14.31□□□□□ -0.12
CLN3-210ENST00000563874 COG5Q9UP83 839 aa14.31□□□□□ -0.12
CLN3-210ENST00000563874 DAAM1Q9Y4D1 1078 aa14.31□□□□□ -0.12
CLN3-210ENST00000563874 SRRM3A6NNA2 597 aaPredicted RBP14.31□□□□□ -0.12
CLN3-210ENST00000563874 OPLAHO14841 1288 aa14.31□□□□□ -0.12
CLN3-210ENST00000563874 PTENP60484 403 aa14.31□□□□□ -0.12
CLN3-210ENST00000563874 DDR1Q08345 913 aa14.31□□□□□ -0.12
CLN3-210ENST00000563874 MKRN4PQ13434 485 aaPredicted RBP14.31□□□□□ -0.12
CLN3-210ENST00000563874 PLS1Q14651 629 aa14.31□□□□□ -0.12
CLN3-210ENST00000563874 CDC42EP5Q6NZY7 148 aa14.31□□□□□ -0.12
CLN3-210ENST00000563874 MBOAT7Q96N66 472 aa14.31□□□□□ -0.12
CLN3-210ENST00000563874 SCLT1Q96NL6 688 aa14.31□□□□□ -0.12
CLN3-210ENST00000563874 PCDHAC2Q9Y5I4 1007 aa14.31□□□□□ -0.12
CLN3-210ENST00000563874 SLC16A3O15427 465 aaKnown RBP14.3□□□□□ -0.12
CLN3-210ENST00000563874 PPFIA2O75334 1257 aa14.3□□□□□ -0.12
CLN3-210ENST00000563874 FAM13AO94988 1023 aa14.3□□□□□ -0.12
CLN3-210ENST00000563874 HLA-DOAP06340 250 aa14.3□□□□□ -0.12
CLN3-210ENST00000563874 DRD4P21917 467 aa14.3□□□□□ -0.12
CLN3-210ENST00000563874 RDXP35241 583 aaKnown RBP14.3□□□□□ -0.12
CLN3-210ENST00000563874 ZNF76P36508 570 aa14.3□□□□□ -0.12
CLN3-210ENST00000563874 SLCO1A2P46721 670 aa14.3□□□□□ -0.12
CLN3-210ENST00000563874 SCTRP47872 440 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms