RNA–Protein interactions for RNA: ENST00000563623.5

ABCA3-203, Transcript of ATP binding cassette subfamily A member 3, humanhuman

TSL 1 (best)

Gene ABCA3, Length 3,649 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3-203ENST00000563623 NAA25Q14CX7 972 aa12.8□□□□□ -0.36
ABCA3-203ENST00000563623 DOK7Q18PE1 504 aa12.8□□□□□ -0.36
ABCA3-203ENST00000563623 NT5DC3Q86UY8 548 aa12.8□□□□□ -0.36
ABCA3-203ENST00000563623 SLFN12Q8IYM2 578 aa12.8□□□□□ -0.36
ABCA3-203ENST00000563623 SHANK3Q9BYB0 1731 aa12.8□□□□□ -0.36
ABCA3-203ENST00000563623 SPATA31A1Q5TZJ5 1347 aa12.8□□□□□ -0.36
ABCA3-203ENST00000563623 FGFR4P22455 802 aa12.8□□□□□ -0.36
ABCA3-203ENST00000563623 SMARCA1P28370 1054 aa12.8□□□□□ -0.36
ABCA3-203ENST00000563623 SCTRP47872 440 aa12.8□□□□□ -0.36
ABCA3-203ENST00000563623 CLNS1AP54105 237 aaKnown RBP12.8□□□□□ -0.36
ABCA3-203ENST00000563623 PMS2P54278 862 aa12.8□□□□□ -0.36
ABCA3-203ENST00000563623 LRRC14Q15048 493 aa12.8□□□□□ -0.36
ABCA3-203ENST00000563623 GPATCH4Q5T3I0 446 aaKnown RBP12.8□□□□□ -0.36
ABCA3-203ENST00000563623 AGBL2Q5U5Z8 902 aa12.8□□□□□ -0.36
ABCA3-203ENST00000563623 SLFN13Q68D06 897 aa12.8□□□□□ -0.36
ABCA3-203ENST00000563623 KIRREL3Q8IZU9 778 aa12.8□□□□□ -0.36
ABCA3-203ENST00000563623 MTRF1LQ9UGC7 380 aaKnown RBP12.8□□□□□ -0.36
ABCA3-203ENST00000563623 FRMD4BQ9Y2L6 1034 aa12.8□□□□□ -0.36
ABCA3-203ENST00000563623 RHBDL3P58872 404 aa12.8□□□□□ -0.36
ABCA3-203ENST00000563623 TRAPPC3LQ5T215 181 aa12.8□□□□□ -0.36
ABCA3-203ENST00000563623 LRRC57Q8N9N7 239 aa12.8□□□□□ -0.36
ABCA3-203ENST00000563623 CCDC63Q8NA47 563 aa12.8□□□□□ -0.36
ABCA3-203ENST00000563623 NAP1L3Q99457 506 aaPredicted RBP12.8□□□□□ -0.36
ABCA3-203ENST00000563623 RUSC1Q9BVN2 902 aa12.8□□□□□ -0.36
ABCA3-203ENST00000563623 SUCLA2Q9P2R7 463 aaPredicted RBP12.8□□□□□ -0.36
ABCA3-203ENST00000563623 MYH14Q7Z406 1995 aaKnown RBP12.8□□□□□ -0.36
ABCA3-203ENST00000563623 SPOPO43791 374 aa12.79□□□□□ -0.36
ABCA3-203ENST00000563623 LMNB1P20700 586 aa12.79□□□□□ -0.36
ABCA3-203ENST00000563623 TM4SF1P30408 202 aa12.79□□□□□ -0.36
ABCA3-203ENST00000563623 VPS41P49754 854 aa12.79□□□□□ -0.36
ABCA3-203ENST00000563623 ANKRD20A8PQ5CZ79 823 aa12.79□□□□□ -0.36
ABCA3-203ENST00000563623 ARHGAP27Q6ZUM4 889 aa12.79□□□□□ -0.36
ABCA3-203ENST00000563623 FBXO25Q8TCJ0 367 aa12.79□□□□□ -0.36
ABCA3-203ENST00000563623 NAP1L4Q99733 375 aaKnown RBP12.79□□□□□ -0.36
ABCA3-203ENST00000563623 PCIF1Q9H4Z3 704 aa12.79□□□□□ -0.36
ABCA3-203ENST00000563623 TYW1Q9NV66 732 aaKnown RBP12.79□□□□□ -0.36
ABCA3-203ENST00000563623 DBR1Q9UK59 544 aaKnown RBP12.79□□□□□ -0.36
ABCA3-203ENST00000563623 STRCP1A6NGW2 1772 aa12.79□□□□□ -0.36
ABCA3-203ENST00000563623 SNED1Q8TER0 1413 aa12.79□□□□□ -0.36
ABCA3-203ENST00000563623 CCDC169A6NNP5 214 aa12.79□□□□□ -0.36
ABCA3-203ENST00000563623 ECHS1P30084 290 aa12.79□□□□□ -0.36
ABCA3-203ENST00000563623 NT5C2P49902 561 aa12.79□□□□□ -0.36
ABCA3-203ENST00000563623 SLC29A2Q14542 456 aa12.79□□□□□ -0.36
ABCA3-203ENST00000563623 COG2Q14746 738 aa12.79□□□□□ -0.36
ABCA3-203ENST00000563623 EPHA7Q15375 998 aa12.79□□□□□ -0.36
ABCA3-203ENST00000563623 NBPF9Q3BBW0 867 aa12.79□□□□□ -0.36
ABCA3-203ENST00000563623 NAIF1Q69YI7 327 aaPredicted RBP12.79□□□□□ -0.36
ABCA3-203ENST00000563623 CYP2W1Q8TAV3 490 aa12.79□□□□□ -0.36
ABCA3-203ENST00000563623 THAP2Q9H0W7 228 aa12.79□□□□□ -0.36
ABCA3-203ENST00000563623 SLC12A6Q9UHW9 1150 aa12.79□□□□□ -0.36
ABCA3-203ENST00000563623 ROBO3Q96MS0 1386 aa12.79□□□□□ -0.36
ABCA3-203ENST00000563623 DDX39AO00148 427 aaKnown RBP12.79□□□□□ -0.36
ABCA3-203ENST00000563623 SOX5P35711 763 aa12.79□□□□□ -0.36
ABCA3-203ENST00000563623 PSMC2P35998 433 aaKnown RBP12.79□□□□□ -0.36
ABCA3-203ENST00000563623 IFI35P80217 286 aaPredicted RBP12.79□□□□□ -0.36
ABCA3-203ENST00000563623 ZKSCAN8Q15776 578 aaPredicted RBP12.79□□□□□ -0.36
ABCA3-203ENST00000563623 FUKQ8N0W3 1084 aa12.79□□□□□ -0.36
ABCA3-203ENST00000563623 SPICE1Q8N0Z3 855 aa12.79□□□□□ -0.36
ABCA3-203ENST00000563623 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.79□□□□□ -0.36
ABCA3-203ENST00000563623 RFFLQ8WZ73 363 aa12.79□□□□□ -0.36
ABCA3-203ENST00000563623 SLC35C1Q96A29 364 aa12.79□□□□□ -0.36
ABCA3-203ENST00000563623 ARHGEF26Q96DR7 871 aa12.79□□□□□ -0.36
ABCA3-203ENST00000563623 PRMT1Q99873 361 aaKnown RBP12.79□□□□□ -0.36
ABCA3-203ENST00000563623 CPSF2Q9P2I0 782 aaKnown RBP12.79□□□□□ -0.36
ABCA3-203ENST00000563623 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.78□□□□□ -0.36
ABCA3-203ENST00000563623 H0YGN5 161 aa12.78□□□□□ -0.36
ABCA3-203ENST00000563623 PDXKO00764 312 aa12.78□□□□□ -0.36
ABCA3-203ENST00000563623 PPP1R12AO14974 1030 aaPredicted RBP12.78□□□□□ -0.36
ABCA3-203ENST00000563623 ATP2B4P23634 1241 aa12.78□□□□□ -0.36
ABCA3-203ENST00000563623 KCNJ1P48048 391 aa12.78□□□□□ -0.36
ABCA3-203ENST00000563623 SLC12A3P55017 1021 aa12.78□□□□□ -0.36
ABCA3-203ENST00000563623 SHROOM1Q2M3G4 852 aaPredicted RBP12.78□□□□□ -0.36
ABCA3-203ENST00000563623 CHADLQ6NUI6 762 aa12.78□□□□□ -0.36
ABCA3-203ENST00000563623 YTHDF3Q7Z739 585 aaKnown RBP12.78□□□□□ -0.36
ABCA3-203ENST00000563623 LRRC34Q8IZ02 419 aa12.78□□□□□ -0.36
ABCA3-203ENST00000563623 C18orf8Q96DM3 657 aa12.78□□□□□ -0.36
ABCA3-203ENST00000563623 HOOK2Q96ED9 719 aa12.78□□□□□ -0.36
ABCA3-203ENST00000563623 PAIP2Q9BPZ3 127 aaKnown RBP12.78□□□□□ -0.36
ABCA3-203ENST00000563623 DDX4Q9NQI0 724 aaKnown RBP12.78□□□□□ -0.36
ABCA3-203ENST00000563623 TAS2R14Q9NYV8 317 aa12.78□□□□□ -0.36
ABCA3-203ENST00000563623 TMEM59LQ9UK28 342 aa12.78□□□□□ -0.36
ABCA3-203ENST00000563623 TPX2Q9ULW0 747 aaKnown RBP12.78□□□□□ -0.36
ABCA3-203ENST00000563623 STK38LQ9Y2H1 464 aa12.78□□□□□ -0.36
ABCA3-203ENST00000563623 NFS1Q9Y697 457 aa12.78□□□□□ -0.36
ABCA3-203ENST00000563623 ZBTB39O15060 712 aa12.78□□□□□ -0.36
ABCA3-203ENST00000563623 CFBP00751 764 aa12.78□□□□□ -0.36
ABCA3-203ENST00000563623 SNX1Q13596 522 aa12.78□□□□□ -0.36
ABCA3-203ENST00000563623 SEL1L2Q5TEA6 688 aa12.78□□□□□ -0.36
ABCA3-203ENST00000563623 JAMLQ86YT9 394 aa12.78□□□□□ -0.36
ABCA3-203ENST00000563623 FAM178BQ8IXR5 827 aa12.78□□□□□ -0.36
ABCA3-203ENST00000563623 LNX1Q8TBB1 728 aaPredicted RBP12.78□□□□□ -0.36
ABCA3-203ENST00000563623 ERP44Q9BS26 406 aa12.78□□□□□ -0.36
ABCA3-203ENST00000563623 TAOK3Q9H2K8 898 aa12.78□□□□□ -0.36
ABCA3-203ENST00000563623 CNOT10Q9H9A5 744 aaKnown RBP12.78□□□□□ -0.36
ABCA3-203ENST00000563623 ERVK-5Q9HDB9 667 aa12.78□□□□□ -0.36
ABCA3-203ENST00000563623 PCDHA2Q9Y5H9 948 aa12.78□□□□□ -0.36
ABCA3-203ENST00000563623 TRIM37O94972 964 aa12.77□□□□□ -0.36
ABCA3-203ENST00000563623 ACSL3O95573 720 aa12.77□□□□□ -0.36
ABCA3-203ENST00000563623 KIAA1755Q5JYT7 1200 aa12.77□□□□□ -0.36
ABCA3-203ENST00000563623 ZFYVE27Q5T4F4 411 aa12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms