RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 MAGI1Q96QZ7 1491 aaPredicted RBP6.68□□□□□ -1.34
CLK3-212ENST00000563418 CEP170Q5SW79 1584 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 E7EWF7 191 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 KLHL2O95198 593 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 ZCCHC18P0CG32 403 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 IDO1P14902 403 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 POLGP54098 1239 aaPredicted RBP6.68□□□□□ -1.34
CLK3-212ENST00000563418 NR1H2P55055 460 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 C16orf72Q14CZ0 275 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 ZNF827Q17R98 1081 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 PPP4R4Q6NUP7 873 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 MINDY2Q8NBR6 621 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 COX4I2Q96KJ9 171 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 KRT82Q9NSB4 513 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 HACD3Q9P035 362 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 NOS1P29475 1434 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 PRR23AA6NEV1 266 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 ACSL3O95573 720 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 ARL1P40616 181 aaPredicted RBP6.67□□□□□ -1.34
CLK3-212ENST00000563418 PTDSS1P48651 473 aaKnown RBP6.67□□□□□ -1.34
CLK3-212ENST00000563418 SGO2Q562F6 1265 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 GALNT17Q6IS24 598 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 P2RX5Q93086 422 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 EBF2Q9HAK2 575 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 ZNF180Q9UJW8 692 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 MAP3K2Q9Y2U5 619 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 SAC3D1A6NKF1 404 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 MAP3K10Q02779 954 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 MPP3Q13368 585 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 LPCAT2Q7L5N7 544 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 PCGF5Q86SE9 256 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 CDH24Q86UP0 819 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 SCG3Q8WXD2 468 aaKnown RBP6.67□□□□□ -1.34
CLK3-212ENST00000563418 PBXIP1Q96AQ6 731 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 EME1Q96AY2 570 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 MCRS1Q96EZ8 462 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 SLC38A10Q9HBR0 1119 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 DMRT2Q9Y5R5 561 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 RAPGEF6Q8TEU7 1601 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 A2MP01023 1474 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 TAF4O00268 1085 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 PLS3P13797 630 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 CDK17Q00537 523 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 FLOT2Q14254 428 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 ANKLE2Q86XL3 938 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 GRPEL2Q8TAA5 225 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 DTX3LQ8TDB6 740 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 FAXDC2Q96IV6 333 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 TRPV6Q9H1D0 765 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 MBD2Q9UBB5 411 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 TUBE1Q9UJT0 475 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 A0A1W2PQJ5 194 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 TRIM43BA6NCK2 446 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 PSMC3P17980 439 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 CHN2P52757 468 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 THOC5Q13769 683 aaKnown RBP6.67□□□□□ -1.34
CLK3-212ENST00000563418 CDR2LQ86X02 465 aaPredicted RBP6.67□□□□□ -1.34
CLK3-212ENST00000563418 KBTBD3Q8NAB2 608 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 FNBP1Q96RU3 617 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 MRPL1Q9BYD6 325 aaKnown RBP6.67□□□□□ -1.34
CLK3-212ENST00000563418 BARX2Q9UMQ3 279 aaPredicted RBP6.67□□□□□ -1.34
CLK3-212ENST00000563418 SRPRBQ9Y5M8 271 aaKnown RBP6.67□□□□□ -1.34
CLK3-212ENST00000563418 IRF6O14896 467 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 SH3BP5O60239 455 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 UBOX5O94941 541 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 PARNO95453 639 aaKnown RBP6.67□□□□□ -1.34
CLK3-212ENST00000563418 PDIA3P30101 505 aaKnown RBP6.67□□□□□ -1.34
CLK3-212ENST00000563418 IGHMBP2P38935 993 aaKnown RBP6.67□□□□□ -1.34
CLK3-212ENST00000563418 BTN2A1Q7KYR7 527 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 NEK8Q86SG6 692 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 CCT6BQ92526 530 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 SNF8Q96H20 258 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 PRAM1Q96QH2 718 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 GLT8D2Q9H1C3 349 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 FTCDO95954 541 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 SLC5A1P13866 664 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 NSFP46459 744 aaKnown RBP6.67□□□□□ -1.34
CLK3-212ENST00000563418 METTL24Q5JXM2 366 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 SFR1Q86XK3 245 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 RSAD2Q8WXG1 361 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 SYMPKQ92797 1274 aaKnown RBP6.67□□□□□ -1.34
CLK3-212ENST00000563418 METTL5Q9NRN9 209 aaKnown RBP6.67□□□□□ -1.34
CLK3-212ENST00000563418 LEMD3Q9Y2U8 911 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 MAST3O60307 1309 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 AFF2P51816 1311 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 PDS5AQ29RF7 1337 aaKnown RBP6.67□□□□□ -1.34
CLK3-212ENST00000563418 WDR19Q8NEZ3 1342 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 ESYT3A0FGR9 886 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 POC1B-GALNT4F8VUJ3 575 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 RHOBTB1O94844 696 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 SCRN3Q0VDG4 424 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 PLEKHA7Q6IQ23 1121 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 PRR23CQ6ZRP0 262 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 GIN1Q9NXP7 522 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 RRN3Q9NYV6 651 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 LIMA1Q9UHB6 759 aaKnown RBP6.67□□□□□ -1.34
CLK3-212ENST00000563418 DTNAQ9Y4J8 743 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 AK5Q9Y6K8 562 aa6.67□□□□□ -1.34
CLK3-212ENST00000563418 SOS2Q07890 1332 aaPredicted RBP6.67□□□□□ -1.34
CLK3-212ENST00000563418 PI4KAP2A4QPH2 592 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms