RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 KIZQ2M2Z5 673 aa14.46□□□□□ -0.09
NEDD8-208ENST00000560427 RHPN2Q8IUC4 686 aa14.46□□□□□ -0.09
NEDD8-208ENST00000560427 NLRP7Q8WX94 980 aa14.46□□□□□ -0.09
NEDD8-208ENST00000560427 SCLT1Q96NL6 688 aa14.46□□□□□ -0.09
NEDD8-208ENST00000560427 OSMRQ99650 979 aa14.46□□□□□ -0.09
NEDD8-208ENST00000560427 INO80BQ9C086 356 aaPredicted RBP14.46□□□□□ -0.09
NEDD8-208ENST00000560427 CSRNP2Q9H175 543 aa14.46□□□□□ -0.09
NEDD8-208ENST00000560427 BHMT2Q9H2M3 363 aa14.46□□□□□ -0.09
NEDD8-208ENST00000560427 XPNPEP1Q9NQW7 623 aa14.46□□□□□ -0.09
NEDD8-208ENST00000560427 KCND2Q9NZV8 630 aa14.46□□□□□ -0.09
NEDD8-208ENST00000560427 GINS2Q9Y248 185 aa14.46□□□□□ -0.09
NEDD8-208ENST00000560427 ZDHHC9Q9Y397 364 aa14.46□□□□□ -0.09
NEDD8-208ENST00000560427 COL4A3BPQ9Y5P4 624 aa14.46□□□□□ -0.09
NEDD8-208ENST00000560427 RANBP2P49792 3224 aaKnown RBP14.45□□□□□ -0.1
NEDD8-208ENST00000560427 HSFX4A0A1B0GTS1 333 aaPredicted RBP14.45□□□□□ -0.1
NEDD8-208ENST00000560427 HSFX3A0A1B0GWH4 333 aaPredicted RBP14.45□□□□□ -0.1
NEDD8-208ENST00000560427 ZBBXA8MT70 800 aa14.45□□□□□ -0.1
NEDD8-208ENST00000560427 USO1O60763 962 aaKnown RBP14.45□□□□□ -0.1
NEDD8-208ENST00000560427 RPS6KA5O75582 802 aa14.45□□□□□ -0.1
NEDD8-208ENST00000560427 DARSP14868 501 aaKnown RBP14.45□□□□□ -0.1
NEDD8-208ENST00000560427 CYP11B2P19099 503 aa14.45□□□□□ -0.1
NEDD8-208ENST00000560427 SMAD3P84022 425 aaKnown RBP14.45□□□□□ -0.1
NEDD8-208ENST00000560427 DNM1Q05193 864 aaKnown RBP14.45□□□□□ -0.1
NEDD8-208ENST00000560427 GRIN1Q05586 938 aa14.45□□□□□ -0.1
NEDD8-208ENST00000560427 POU5F1BQ06416 359 aa14.45□□□□□ -0.1
NEDD8-208ENST00000560427 GRB10Q13322 594 aa14.45□□□□□ -0.1
NEDD8-208ENST00000560427 TFDP1Q14186 410 aa14.45□□□□□ -0.1
NEDD8-208ENST00000560427 PCBP1Q15365 356 aaKnown RBP eCLIP14.45□□□□□ -0.1
NEDD8-208ENST00000560427 PADI6Q6TGC4 694 aa14.45□□□□□ -0.1
NEDD8-208ENST00000560427 RASSF8Q8NHQ8 419 aa14.45□□□□□ -0.1
NEDD8-208ENST00000560427 TMEM40Q8WWA1 233 aa14.45□□□□□ -0.1
NEDD8-208ENST00000560427 TMEM143Q96AN5 459 aa14.45□□□□□ -0.1
NEDD8-208ENST00000560427 PNMA5Q96PV4 448 aa14.45□□□□□ -0.1
NEDD8-208ENST00000560427 TIPINQ9BVW5 301 aa14.45□□□□□ -0.1
NEDD8-208ENST00000560427 GCOM2Q9BZD3 368 aaPredicted RBP14.45□□□□□ -0.1
NEDD8-208ENST00000560427 CXXC1Q9P0U4 656 aaPredicted RBP14.45□□□□□ -0.1
NEDD8-208ENST00000560427 CCDC39Q9UFE4 941 aa14.45□□□□□ -0.1
NEDD8-208ENST00000560427 CIZ1Q9ULV3 898 aaPredicted RBP14.45□□□□□ -0.1
NEDD8-208ENST00000560427 SLC4A7Q9Y6M7 1214 aa14.45□□□□□ -0.1
NEDD8-208ENST00000560427 TRIOBPQ9H2D6 2365 aa14.44□□□□□ -0.1
NEDD8-208ENST00000560427 AMHP03971 560 aa14.44□□□□□ -0.1
NEDD8-208ENST00000560427 SFPQP23246 707 aaKnown RBP eCLIP14.44□□□□□ -0.1
NEDD8-208ENST00000560427 CD52P31358 61 aa14.44□□□□□ -0.1
NEDD8-208ENST00000560427 ARL2P36404 184 aa14.44□□□□□ -0.1
NEDD8-208ENST00000560427 WDR5P61964 334 aaKnown RBP14.44□□□□□ -0.1
NEDD8-208ENST00000560427 ZRSR1Q15695 479 aaKnown RBP14.44□□□□□ -0.1
NEDD8-208ENST00000560427 PRPF31Q8WWY3 499 aaKnown RBP14.44□□□□□ -0.1
NEDD8-208ENST00000560427 SYMPKQ92797 1274 aaKnown RBP14.44□□□□□ -0.1
NEDD8-208ENST00000560427 KIFAP3Q92845 792 aa14.44□□□□□ -0.1
NEDD8-208ENST00000560427 NLRP4Q96MN2 994 aa14.44□□□□□ -0.1
NEDD8-208ENST00000560427 NFKBIZQ9BYH8 718 aa14.44□□□□□ -0.1
NEDD8-208ENST00000560427 AGO3Q9H9G7 860 aaKnown RBP14.44□□□□□ -0.1
NEDD8-208ENST00000560427 ERVK-5Q9HDB9 667 aa14.44□□□□□ -0.1
NEDD8-208ENST00000560427 TFIP11Q9UBB9 837 aaKnown RBP14.44□□□□□ -0.1
NEDD8-208ENST00000560427 STK17AQ9UEE5 414 aa14.44□□□□□ -0.1
NEDD8-208ENST00000560427 PADI3Q9ULW8 664 aa14.44□□□□□ -0.1
NEDD8-208ENST00000560427 E9PMD0 336 aa14.43□□□□□ -0.1
NEDD8-208ENST00000560427 CUTAO60888 179 aa14.43□□□□□ -0.1
NEDD8-208ENST00000560427 ATP2A2P16615 1042 aaKnown RBP14.43□□□□□ -0.1
NEDD8-208ENST00000560427 GUCY2CP25092 1073 aa14.43□□□□□ -0.1
NEDD8-208ENST00000560427 LAMTOR4Q0VGL1 99 aa14.43□□□□□ -0.1
NEDD8-208ENST00000560427 GPR153Q6NV75 609 aa14.43□□□□□ -0.1
NEDD8-208ENST00000560427 KCNK18Q7Z418 384 aa14.43□□□□□ -0.1
NEDD8-208ENST00000560427 SRGAP1Q7Z6B7 1085 aa14.43□□□□□ -0.1
NEDD8-208ENST00000560427 FAM228AQ86W67 206 aa14.43□□□□□ -0.1
NEDD8-208ENST00000560427 IFNLR1Q8IU57 520 aaPredicted RBP14.43□□□□□ -0.1
NEDD8-208ENST00000560427 SYT2Q8N9I0 419 aaPredicted RBP14.43□□□□□ -0.1
NEDD8-208ENST00000560427 PPP1R16BQ96T49 567 aa14.43□□□□□ -0.1
NEDD8-208ENST00000560427 OSBPL7Q9BZF2 842 aa14.43□□□□□ -0.1
NEDD8-208ENST00000560427 SCAND2PQ9GZW5 306 aaPredicted RBP14.43□□□□□ -0.1
NEDD8-208ENST00000560427 POLR3FQ9H1D9 316 aaPredicted RBP14.43□□□□□ -0.1
NEDD8-208ENST00000560427 CDHR5Q9HBB8 845 aa14.43□□□□□ -0.1
NEDD8-208ENST00000560427 BMP2KQ9NSY1 1161 aaPredicted RBP14.43□□□□□ -0.1
NEDD8-208ENST00000560427 RNF216Q9NWF9 866 aaPredicted RBP14.43□□□□□ -0.1
NEDD8-208ENST00000560427 RCOR1Q9UKL0 485 aa14.43□□□□□ -0.1
NEDD8-208ENST00000560427 NOC2LQ9Y3T9 749 aaKnown RBP14.43□□□□□ -0.1
NEDD8-208ENST00000560427 A0A087WWV3 80 aa14.42□□□□□ -0.1
NEDD8-208ENST00000560427 A0A087WZ62 844 aa14.42□□□□□ -0.1
NEDD8-208ENST00000560427 PLA2G4BP0C869 781 aa14.42□□□□□ -0.1
NEDD8-208ENST00000560427 PLCG1P19174 1290 aa14.42□□□□□ -0.1
NEDD8-208ENST00000560427 PHKA2P46019 1235 aa14.42□□□□□ -0.1
NEDD8-208ENST00000560427 NFX1Q12986 1120 aaKnown RBP14.42□□□□□ -0.1
NEDD8-208ENST00000560427 KARSQ15046 597 aaKnown RBP14.42□□□□□ -0.1
NEDD8-208ENST00000560427 PPP2R5AQ15172 486 aa14.42□□□□□ -0.1
NEDD8-208ENST00000560427 RAB30Q15771 203 aa14.42□□□□□ -0.1
NEDD8-208ENST00000560427 TCTN1Q2MV58 587 aa14.42□□□□□ -0.1
NEDD8-208ENST00000560427 FOXD4L6Q3SYB3 417 aaPredicted RBP14.42□□□□□ -0.1
NEDD8-208ENST00000560427 FOXD4L3Q6VB84 417 aaPredicted RBP14.42□□□□□ -0.1
NEDD8-208ENST00000560427 CCDC73Q6ZRK6 1079 aa14.42□□□□□ -0.1
NEDD8-208ENST00000560427 EPSTI1Q96J88 318 aa14.42□□□□□ -0.1
NEDD8-208ENST00000560427 DRC1Q96MC2 740 aa14.42□□□□□ -0.1
NEDD8-208ENST00000560427 CLIC6Q96NY7 704 aa14.42□□□□□ -0.1
NEDD8-208ENST00000560427 FDXACB1Q9BRP7 624 aaPredicted RBP14.42□□□□□ -0.1
NEDD8-208ENST00000560427 TSPYL2Q9H2G4 693 aaPredicted RBP14.42□□□□□ -0.1
NEDD8-208ENST00000560427 C17orf75Q9HAS0 396 aa14.42□□□□□ -0.1
NEDD8-208ENST00000560427 IFT122Q9HBG6 1241 aa14.42□□□□□ -0.1
NEDD8-208ENST00000560427 C1orf112Q9NSG2 853 aa14.42□□□□□ -0.1
NEDD8-208ENST00000560427 ST3GAL5Q9UNP4 418 aa14.42□□□□□ -0.1
NEDD8-208ENST00000560427 EVPLQ92817 2033 aa14.42□□□□□ -0.1
NEDD8-208ENST00000560427 TET1Q8NFU7 2136 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms