RNA–Protein interactions for RNA: ENST00000559886.1

HERC1-205, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 1 (best)

Gene HERC1, Length 2,462 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-205ENST00000559886 HSD3B7Q9H2F3 369 aa13.46□□□□□ -0.25
HERC1-205ENST00000559886 FRMPD3Q5JV73 1810 aa13.46□□□□□ -0.26
HERC1-205ENST00000559886 HAS3O00219 553 aa13.46□□□□□ -0.26
HERC1-205ENST00000559886 EIF3DO15371 548 aaKnown RBP eCLIP13.46□□□□□ -0.26
HERC1-205ENST00000559886 ADAMTS4O75173 837 aa13.46□□□□□ -0.26
HERC1-205ENST00000559886 GCNT3O95395 438 aa13.46□□□□□ -0.26
HERC1-205ENST00000559886 PGK1P00558 417 aa13.46□□□□□ -0.26
HERC1-205ENST00000559886 MYBP10242 640 aa13.46□□□□□ -0.26
HERC1-205ENST00000559886 ARL2P36404 184 aa13.46□□□□□ -0.26
HERC1-205ENST00000559886 PMS1P54277 932 aaKnown RBP13.46□□□□□ -0.26
HERC1-205ENST00000559886 BMT2Q1RMZ1 405 aa13.46□□□□□ -0.26
HERC1-205ENST00000559886 GNASQ5JWF2 1037 aa13.46□□□□□ -0.26
HERC1-205ENST00000559886 ZNF507Q8TCN5 953 aa13.46□□□□□ -0.26
HERC1-205ENST00000559886 TRAPPC12Q8WVT3 735 aa13.46□□□□□ -0.26
HERC1-205ENST00000559886 TMEM143Q96AN5 459 aa13.46□□□□□ -0.26
HERC1-205ENST00000559886 JPH2Q9BR39 696 aaPredicted RBP13.46□□□□□ -0.26
HERC1-205ENST00000559886 NTPCRQ9BSD7 190 aaKnown RBP13.46□□□□□ -0.26
HERC1-205ENST00000559886 STRA6Q9BX79 667 aa13.46□□□□□ -0.26
HERC1-205ENST00000559886 POLR3FQ9H1D9 316 aaPredicted RBP13.46□□□□□ -0.26
HERC1-205ENST00000559886 SEMA6BQ9H3T3 888 aa13.46□□□□□ -0.26
HERC1-205ENST00000559886 XPNPEP3Q9NQH7 507 aa13.46□□□□□ -0.26
HERC1-205ENST00000559886 DDX20Q9UHI6 824 aaKnown RBP13.46□□□□□ -0.26
HERC1-205ENST00000559886 PTPN22Q9Y2R2 807 aa13.46□□□□□ -0.26
HERC1-205ENST00000559886 SCN10AQ9Y5Y9 1956 aa13.46□□□□□ -0.26
HERC1-205ENST00000559886 BICDL2A1A5D9 508 aa13.45□□□□□ -0.26
HERC1-205ENST00000559886 MYL3P08590 195 aa13.45□□□□□ -0.26
HERC1-205ENST00000559886 PEX3P56589 373 aa13.45□□□□□ -0.26
HERC1-205ENST00000559886 PURAQ00577 322 aaKnown RBP13.45□□□□□ -0.26
HERC1-205ENST00000559886 KIAA0753Q2KHM9 967 aa13.45□□□□□ -0.26
HERC1-205ENST00000559886 TTI2Q6NXR4 508 aa13.45□□□□□ -0.26
HERC1-205ENST00000559886 FOXR2Q6PJQ5 311 aa13.45□□□□□ -0.26
HERC1-205ENST00000559886 SLC17A8Q8NDX2 589 aa13.45□□□□□ -0.26
HERC1-205ENST00000559886 SPIRE2Q8WWL2 714 aa13.45□□□□□ -0.26
HERC1-205ENST00000559886 BSNDQ8WZ55 320 aa13.45□□□□□ -0.26
HERC1-205ENST00000559886 ST6GALNAC4Q9H4F1 302 aa13.45□□□□□ -0.26
HERC1-205ENST00000559886 NFE2L3Q9Y4A8 694 aa13.45□□□□□ -0.26
HERC1-205ENST00000559886 TRIM49BA6NDI0 452 aa13.45□□□□□ -0.26
HERC1-205ENST00000559886 PPP1R37O75864 691 aa13.45□□□□□ -0.26
HERC1-205ENST00000559886 C22orf31O95567 290 aa13.45□□□□□ -0.26
HERC1-205ENST00000559886 HOXD13P35453 343 aa13.45□□□□□ -0.26
HERC1-205ENST00000559886 NCKAP1LP55160 1127 aa13.45□□□□□ -0.26
HERC1-205ENST00000559886 DMP1Q13316 513 aaPredicted RBP13.45□□□□□ -0.26
HERC1-205ENST00000559886 MFSD10Q14728 455 aa13.45□□□□□ -0.26
HERC1-205ENST00000559886 STXBP4Q6ZWJ1 553 aa13.45□□□□□ -0.26
HERC1-205ENST00000559886 KATNAL1Q9BW62 490 aa13.45□□□□□ -0.26
HERC1-205ENST00000559886 HMX1Q9NP08 348 aaPredicted RBP13.45□□□□□ -0.26
HERC1-205ENST00000559886 FANCLQ9NW38 375 aa13.45□□□□□ -0.26
HERC1-205ENST00000559886 KCNG1Q9UIX4 513 aa13.45□□□□□ -0.26
HERC1-205ENST00000559886 PCDHB13Q9Y5F0 798 aa13.45□□□□□ -0.26
HERC1-205ENST00000559886 UBE4BO95155 1302 aa13.44□□□□□ -0.26
HERC1-205ENST00000559886 TRIP12Q14669 1992 aaPredicted RBP13.44□□□□□ -0.26
HERC1-205ENST00000559886 MAGEB2O15479 319 aa13.44□□□□□ -0.26
HERC1-205ENST00000559886 MSCO60682 206 aa13.44□□□□□ -0.26
HERC1-205ENST00000559886 PRPF6O94906 941 aaKnown RBP13.44□□□□□ -0.26
HERC1-205ENST00000559886 CST5P28325 142 aaPredicted RBP13.44□□□□□ -0.26
HERC1-205ENST00000559886 NPTX2P47972 431 aa13.44□□□□□ -0.26
HERC1-205ENST00000559886 PSEN2P49810 448 aa13.44□□□□□ -0.26
HERC1-205ENST00000559886 SMTNP53814 917 aa13.44□□□□□ -0.26
HERC1-205ENST00000559886 TPM4P67936 248 aa13.44□□□□□ -0.26
HERC1-205ENST00000559886 PPFIA1Q13136 1202 aa13.44□□□□□ -0.26
HERC1-205ENST00000559886 MKRN4PQ13434 485 aaPredicted RBP13.44□□□□□ -0.26
HERC1-205ENST00000559886 ALCAMQ13740 583 aa13.44□□□□□ -0.26
HERC1-205ENST00000559886 ZC2HC1CQ53FD0 456 aaPredicted RBP13.44□□□□□ -0.26
HERC1-205ENST00000559886 IER5Q5VY09 327 aa13.44□□□□□ -0.26
HERC1-205ENST00000559886 ANKRD40Q6AI12 368 aa13.44□□□□□ -0.26
HERC1-205ENST00000559886 KLHDC9Q8NEP7 349 aa13.44□□□□□ -0.26
HERC1-205ENST00000559886 TCP11Q8WWU5 503 aa13.44□□□□□ -0.26
HERC1-205ENST00000559886 IFT74Q96LB3 600 aa13.44□□□□□ -0.26
HERC1-205ENST00000559886 KCTD10Q9H3F6 313 aa13.44□□□□□ -0.26
HERC1-205ENST00000559886 RRN3P2A6NIE6 340 aa13.44□□□□□ -0.26
HERC1-205ENST00000559886 K7ENM7 598 aa13.44□□□□□ -0.26
HERC1-205ENST00000559886 ZEB2O60315 1214 aa13.44□□□□□ -0.26
HERC1-205ENST00000559886 GLRA2P23416 452 aa13.44□□□□□ -0.26
HERC1-205ENST00000559886 KLRC1P26715 233 aa13.44□□□□□ -0.26
HERC1-205ENST00000559886 IGBP1P78318 339 aa13.44□□□□□ -0.26
HERC1-205ENST00000559886 LRRC63Q05C16 580 aa13.44□□□□□ -0.26
HERC1-205ENST00000559886 DRP2Q13474 957 aa13.44□□□□□ -0.26
HERC1-205ENST00000559886 GRIK4Q16099 956 aa13.44□□□□□ -0.26
HERC1-205ENST00000559886 KNOP1Q1ED39 458 aaKnown RBP13.44□□□□□ -0.26
HERC1-205ENST00000559886 ZCWPW2Q504Y3 356 aa13.44□□□□□ -0.26
HERC1-205ENST00000559886 HAUS6Q7Z4H7 955 aa13.44□□□□□ -0.26
HERC1-205ENST00000559886 NELFCDQ8IXH7 590 aa13.44□□□□□ -0.26
HERC1-205ENST00000559886 DUSP9Q99956 384 aaKnown RBP13.44□□□□□ -0.26
HERC1-205ENST00000559886 SUGCTQ9HAC7 445 aa13.44□□□□□ -0.26
HERC1-205ENST00000559886 CCDC169A6NNP5 214 aa13.43□□□□□ -0.26
HERC1-205ENST00000559886 SMIM10L2AP0DMW4 78 aa13.43□□□□□ -0.26
HERC1-205ENST00000559886 SMIM10L2BP0DMW5 78 aa13.43□□□□□ -0.26
HERC1-205ENST00000559886 ZNF18P17022 549 aa13.43□□□□□ -0.26
HERC1-205ENST00000559886 GTF2BQ00403 316 aa13.43□□□□□ -0.26
HERC1-205ENST00000559886 PPP2R5AQ15172 486 aa13.43□□□□□ -0.26
HERC1-205ENST00000559886 MARCH8Q5T0T0 291 aa13.43□□□□□ -0.26
HERC1-205ENST00000559886 CCSAPQ6IQ19 270 aaPredicted RBP13.43□□□□□ -0.26
HERC1-205ENST00000559886 EFCAB12Q6NXP0 572 aa13.43□□□□□ -0.26
HERC1-205ENST00000559886 LRRC71Q8N4P6 559 aa13.43□□□□□ -0.26
HERC1-205ENST00000559886 RETREG2Q8NC44 543 aa13.43□□□□□ -0.26
HERC1-205ENST00000559886 TMEM161BQ8NDZ6 487 aa13.43□□□□□ -0.26
HERC1-205ENST00000559886 ASAP3Q8TDY4 903 aa13.43□□□□□ -0.26
HERC1-205ENST00000559886 MTG1Q9BT17 334 aaPredicted RBP13.43□□□□□ -0.26
HERC1-205ENST00000559886 KMT5AQ9NQR1 393 aa13.43□□□□□ -0.26
HERC1-205ENST00000559886 NRCAMQ92823 1304 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms