RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 NOX5Q96PH1 765 aa11.61□□□□□ -0.55
CUX1-217ENST00000558836 ALS2CR12Q96Q35 445 aa11.61□□□□□ -0.55
CUX1-217ENST00000558836 PXMP2Q9NR77 195 aa11.61□□□□□ -0.55
CUX1-217ENST00000558836 PICK1Q9NRD5 415 aa11.61□□□□□ -0.55
CUX1-217ENST00000558836 RAB21Q9UL25 225 aa11.61□□□□□ -0.55
CUX1-217ENST00000558836 GOLGA8IPA6NC78 632 aa11.61□□□□□ -0.55
CUX1-217ENST00000558836 GOLGA8JA6NMD2 632 aa11.61□□□□□ -0.55
CUX1-217ENST00000558836 SLC16A4O15374 487 aa11.61□□□□□ -0.55
CUX1-217ENST00000558836 PEX3P56589 373 aa11.61□□□□□ -0.55
CUX1-217ENST00000558836 SMC1AQ14683 1233 aaKnown RBP11.61□□□□□ -0.55
CUX1-217ENST00000558836 BRD3Q15059 726 aa11.61□□□□□ -0.55
CUX1-217ENST00000558836 ARHGAP44Q17R89 818 aa11.61□□□□□ -0.55
CUX1-217ENST00000558836 METTL14Q9HCE5 456 aaKnown RBP11.61□□□□□ -0.55
CUX1-217ENST00000558836 FRMD4BQ9Y2L6 1034 aa11.61□□□□□ -0.55
CUX1-217ENST00000558836 RBBP6Q7Z6E9 1792 aaKnown RBP11.6□□□□□ -0.55
CUX1-217ENST00000558836 FZD9O00144 591 aa11.6□□□□□ -0.55
CUX1-217ENST00000558836 EIF3DO15371 548 aaKnown RBP eCLIP11.6□□□□□ -0.55
CUX1-217ENST00000558836 N4BP1O75113 896 aaKnown RBP11.6□□□□□ -0.55
CUX1-217ENST00000558836 FMO5P49326 533 aa11.6□□□□□ -0.55
CUX1-217ENST00000558836 USP14P54578 494 aa11.6□□□□□ -0.55
CUX1-217ENST00000558836 XKR9Q5GH70 373 aa11.6□□□□□ -0.55
CUX1-217ENST00000558836 FAM102BQ5T8I3 360 aa11.6□□□□□ -0.55
CUX1-217ENST00000558836 SCYL3Q8IZE3 742 aa11.6□□□□□ -0.55
CUX1-217ENST00000558836 SYN2Q92777 582 aaPredicted RBP11.6□□□□□ -0.55
CUX1-217ENST00000558836 NUCKS1Q9H1E3 243 aaKnown RBP11.6□□□□□ -0.55
CUX1-217ENST00000558836 GGA3Q9NZ52 723 aa11.6□□□□□ -0.55
CUX1-217ENST00000558836 ANO9A1A5B4 782 aa11.6□□□□□ -0.55
CUX1-217ENST00000558836 PJA2O43164 708 aa11.6□□□□□ -0.55
CUX1-217ENST00000558836 MYBL2P10244 700 aa11.6□□□□□ -0.55
CUX1-217ENST00000558836 OAS2P29728 719 aaKnown RBP11.6□□□□□ -0.55
CUX1-217ENST00000558836 NOP2P46087 812 aaKnown RBP11.6□□□□□ -0.55
CUX1-217ENST00000558836 LRRC1Q9BTT6 524 aa11.6□□□□□ -0.55
CUX1-217ENST00000558836 PDE11AQ9HCR9 933 aa11.6□□□□□ -0.55
CUX1-217ENST00000558836 ZHX1Q9UKY1 873 aaPredicted RBP11.6□□□□□ -0.55
CUX1-217ENST00000558836 ODF2LQ9ULJ1 636 aa11.6□□□□□ -0.55
CUX1-217ENST00000558836 USP20Q9Y2K6 914 aa11.6□□□□□ -0.55
CUX1-217ENST00000558836 CCDC169A6NNP5 214 aa11.59□□□□□ -0.55
CUX1-217ENST00000558836 RBAK-RBAKDNI3L0D1 243 aa11.59□□□□□ -0.55
CUX1-217ENST00000558836 SLC16A3O15427 465 aaKnown RBP11.59□□□□□ -0.55
CUX1-217ENST00000558836 PPP1R12BO60237 982 aaPredicted RBP11.59□□□□□ -0.55
CUX1-217ENST00000558836 BCRP11274 1271 aa11.59□□□□□ -0.55
CUX1-217ENST00000558836 GUCY2CP25092 1073 aa11.59□□□□□ -0.55
CUX1-217ENST00000558836 RPS12P25398 132 aaKnown RBP11.59□□□□□ -0.55
CUX1-217ENST00000558836 HIRAP54198 1017 aaPredicted RBP11.59□□□□□ -0.55
CUX1-217ENST00000558836 TMEM132BQ14DG7 1078 aa11.59□□□□□ -0.55
CUX1-217ENST00000558836 FAM84AQ96KN4 292 aa11.59□□□□□ -0.55
CUX1-217ENST00000558836 PLCB1Q9NQ66 1216 aa11.59□□□□□ -0.55
CUX1-217ENST00000558836 POLR2AP24928 1970 aaKnown RBP11.59□□□□□ -0.55
CUX1-217ENST00000558836 H3BQF6 201 aa11.59□□□□□ -0.55
CUX1-217ENST00000558836 PHACTR2O75167 634 aa11.59□□□□□ -0.55
CUX1-217ENST00000558836 NR3C2P08235 984 aa11.59□□□□□ -0.55
CUX1-217ENST00000558836 GCLMP48507 274 aa11.59□□□□□ -0.55
CUX1-217ENST00000558836 FSTL1Q12841 308 aa11.59□□□□□ -0.55
CUX1-217ENST00000558836 TERF2Q15554 542 aa11.59□□□□□ -0.55
CUX1-217ENST00000558836 CCDC181Q5TID7 509 aa11.59□□□□□ -0.55
CUX1-217ENST00000558836 ALKBH5Q6P6C2 394 aaKnown RBP11.59□□□□□ -0.55
CUX1-217ENST00000558836 LARSQ9P2J5 1176 aaKnown RBP11.59□□□□□ -0.55
CUX1-217ENST00000558836 DNAJC12Q9UKB3 198 aa11.59□□□□□ -0.55
CUX1-217ENST00000558836 L1RE1Q9UN81 338 aa11.59□□□□□ -0.55
CUX1-217ENST00000558836 DRAP1Q14919 205 aaPredicted RBP11.58□□□□□ -0.55
CUX1-217ENST00000558836 NAB2Q15742 525 aa11.58□□□□□ -0.55
CUX1-217ENST00000558836 ANO5Q75V66 913 aa11.58□□□□□ -0.55
CUX1-217ENST00000558836 HAUS6Q7Z4H7 955 aa11.58□□□□□ -0.55
CUX1-217ENST00000558836 SPATA4Q8NEY3 305 aa11.58□□□□□ -0.55
CUX1-217ENST00000558836 SEPT11Q9NVA2 429 aaKnown RBP11.58□□□□□ -0.55
CUX1-217ENST00000558836 DMGDHQ9UI17 866 aaKnown RBP11.58□□□□□ -0.55
CUX1-217ENST00000558836 NAGPAQ9UK23 515 aa11.58□□□□□ -0.55
CUX1-217ENST00000558836 LRRIQ3A6PVS8 624 aaPredicted RBP11.58□□□□□ -0.56
CUX1-217ENST00000558836 EVI5O60447 810 aa11.58□□□□□ -0.56
CUX1-217ENST00000558836 RGS20O76081 388 aa11.58□□□□□ -0.56
CUX1-217ENST00000558836 TNNT3P45378 269 aaPredicted RBP11.58□□□□□ -0.56
CUX1-217ENST00000558836 CKAP4Q07065 602 aaKnown RBP11.58□□□□□ -0.56
CUX1-217ENST00000558836 DCAF15Q66K64 600 aa11.58□□□□□ -0.56
CUX1-217ENST00000558836 ZNF771Q7L3S4 317 aaPredicted RBP11.58□□□□□ -0.56
CUX1-217ENST00000558836 GLYCTKQ8IVS8 523 aa11.58□□□□□ -0.56
CUX1-217ENST00000558836 PROCA1Q8NCQ7 364 aaPredicted RBP11.58□□□□□ -0.56
CUX1-217ENST00000558836 U2AF1L4Q8WU68 220 aaKnown RBP11.58□□□□□ -0.56
CUX1-217ENST00000558836 BBXQ8WY36 941 aaPredicted RBP11.58□□□□□ -0.56
CUX1-217ENST00000558836 SAAL1Q96ER3 474 aa11.58□□□□□ -0.56
CUX1-217ENST00000558836 TBC1D22BQ9NU19 505 aa11.58□□□□□ -0.56
CUX1-217ENST00000558836 GABBR1Q9UBS5 961 aa11.58□□□□□ -0.56
CUX1-217ENST00000558836 SEL1LQ9UBV2 794 aa11.58□□□□□ -0.56
CUX1-217ENST00000558836 ZNF214Q9UL59 606 aaPredicted RBP11.58□□□□□ -0.56
CUX1-217ENST00000558836 POTEB2H3BUK9 544 aa11.58□□□□□ -0.56
CUX1-217ENST00000558836 ERLIN1O75477 346 aa11.58□□□□□ -0.56
CUX1-217ENST00000558836 PPP1R37O75864 691 aa11.58□□□□□ -0.56
CUX1-217ENST00000558836 ABCB4P21439 1286 aa11.58□□□□□ -0.56
CUX1-217ENST00000558836 BFSP1Q12934 665 aa11.58□□□□□ -0.56
CUX1-217ENST00000558836 CASP8Q14790 479 aa11.58□□□□□ -0.56
CUX1-217ENST00000558836 PHLDB3Q6NSJ2 640 aa11.58□□□□□ -0.56
CUX1-217ENST00000558836 SWSAP1Q6NVH7 229 aa11.58□□□□□ -0.56
CUX1-217ENST00000558836 ARHGAP27Q6ZUM4 889 aa11.58□□□□□ -0.56
CUX1-217ENST00000558836 STXBP4Q6ZWJ1 553 aa11.58□□□□□ -0.56
CUX1-217ENST00000558836 CCDC127Q96BQ5 260 aa11.58□□□□□ -0.56
CUX1-217ENST00000558836 POP1Q99575 1024 aaKnown RBP11.58□□□□□ -0.56
CUX1-217ENST00000558836 ACP6Q9NPH0 428 aa11.58□□□□□ -0.56
CUX1-217ENST00000558836 RBM12Q9NTZ6 932 aaKnown RBP11.58□□□□□ -0.56
CUX1-217ENST00000558836 DMAC2Q9NW81 257 aa11.58□□□□□ -0.56
CUX1-217ENST00000558836 HYOU1Q9Y4L1 999 aa11.58□□□□□ -0.56
CUX1-217ENST00000558836 DOCK5Q9H7D0 1870 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms