RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, human

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-233	ENST00000557529	PEX3	P56589	373 aa		13.71	□□□□□ -0.21
SHMT2-233	ENST00000557529	GTF2B	Q00403	316 aa		13.71	□□□□□ -0.21
SHMT2-233	ENST00000557529	KCNA1	Q09470	495 aa		13.71	□□□□□ -0.21
SHMT2-233	ENST00000557529	LAMC2	Q13753	1193 aa		13.71	□□□□□ -0.21
SHMT2-233	ENST00000557529	MTERF2	Q49AM1	385 aa		13.71	□□□□□ -0.21
SHMT2-233	ENST00000557529	FIGN	Q5HY92	759 aa		13.71	□□□□□ -0.21
SHMT2-233	ENST00000557529	PLPPR4	Q7Z2D5	763 aa		13.71	□□□□□ -0.21
SHMT2-233	ENST00000557529	HAUS6	Q7Z4H7	955 aa		13.71	□□□□□ -0.21
SHMT2-233	ENST00000557529	EMSY	Q7Z589	1322 aa		13.71	□□□□□ -0.21
SHMT2-233	ENST00000557529	EXOC8	Q8IYI6	725 aa		13.71	□□□□□ -0.21
SHMT2-233	ENST00000557529	HHIPL1	Q96JK4	782 aa		13.71	□□□□□ -0.21
SHMT2-233	ENST00000557529	MAML3	Q96JK9	1138 aa		13.71	□□□□□ -0.21
SHMT2-233	ENST00000557529	IFT74	Q96LB3	600 aa		13.71	□□□□□ -0.21
SHMT2-233	ENST00000557529	PCYT2	Q99447	389 aa		13.71	□□□□□ -0.21
SHMT2-233	ENST00000557529	BAG1	Q99933	345 aa	Predicted RBP	13.71	□□□□□ -0.21
SHMT2-233	ENST00000557529	NTPCR	Q9BSD7	190 aa	Known RBP	13.71	□□□□□ -0.21
SHMT2-233	ENST00000557529	MKNK1	Q9BUB5	465 aa		13.71	□□□□□ -0.21
SHMT2-233	ENST00000557529	GPRC5C	Q9NQ84	441 aa		13.71	□□□□□ -0.21
SHMT2-233	ENST00000557529	KCND1	Q9NSA2	647 aa		13.71	□□□□□ -0.21
SHMT2-233	ENST00000557529	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	13.71	□□□□□ -0.21
SHMT2-233	ENST00000557529	ZNFX1	Q9P2E3	1918 aa	Known RBP	13.71	□□□□□ -0.21
SHMT2-233	ENST00000557529	ZMYM2	Q9UBW7	1377 aa		13.71	□□□□□ -0.21
SHMT2-233	ENST00000557529	ARMCX3	Q9UH62	379 aa	Predicted RBP	13.71	□□□□□ -0.21
SHMT2-233	ENST00000557529	CPA4	Q9UI42	421 aa		13.71	□□□□□ -0.21
SHMT2-233	ENST00000557529	EXOC7	Q9UPT5	735 aa		13.71	□□□□□ -0.21
SHMT2-233	ENST00000557529	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	13.71	□□□□□ -0.21
SHMT2-233	ENST00000557529	ARHGAP6	O43182	974 aa		13.71	□□□□□ -0.22
SHMT2-233	ENST00000557529	GH1	P01241	217 aa		13.71	□□□□□ -0.22
SHMT2-233	ENST00000557529	CASP14	P31944	242 aa		13.71	□□□□□ -0.22
SHMT2-233	ENST00000557529	EMC2	Q15006	297 aa		13.71	□□□□□ -0.22
SHMT2-233	ENST00000557529	SYCP1	Q15431	976 aa		13.71	□□□□□ -0.22
SHMT2-233	ENST00000557529	TAPT1	Q6NXT6	567 aa		13.71	□□□□□ -0.22
SHMT2-233	ENST00000557529	SLC9A9	Q8IVB4	645 aa		13.71	□□□□□ -0.22
SHMT2-233	ENST00000557529	TMEM174	Q8WUU8	243 aa		13.71	□□□□□ -0.22
SHMT2-233	ENST00000557529	SLC7A3	Q8WY07	619 aa		13.71	□□□□□ -0.22
SHMT2-233	ENST00000557529	BBX	Q8WY36	941 aa	Predicted RBP	13.71	□□□□□ -0.22
SHMT2-233	ENST00000557529	GLG1	Q92896	1179 aa		13.71	□□□□□ -0.22
SHMT2-233	ENST00000557529	PCMTD1	Q96MG8	357 aa	Predicted RBP	13.71	□□□□□ -0.22
SHMT2-233	ENST00000557529	ZFYVE28	Q9HCC9	887 aa		13.71	□□□□□ -0.22
SHMT2-233	ENST00000557529	XPNPEP1	Q9NQW7	623 aa		13.71	□□□□□ -0.22
SHMT2-233	ENST00000557529	AGPAT3	Q9NRZ7	376 aa		13.71	□□□□□ -0.22
SHMT2-233	ENST00000557529	LUC7L2	Q9Y383	392 aa	Known RBP	13.71	□□□□□ -0.22
SHMT2-233	ENST00000557529	DOCK5	Q9H7D0	1870 aa		13.7	□□□□□ -0.22
SHMT2-233	ENST00000557529	ZNF236	Q9UL36	1845 aa		13.7	□□□□□ -0.22
SHMT2-233	ENST00000557529	MYH11	P35749	1972 aa		13.7	□□□□□ -0.22
SHMT2-233	ENST00000557529	WDR81	Q562E7	1941 aa		13.7	□□□□□ -0.22
SHMT2-233	ENST00000557529	CCDC169	A6NNP5	214 aa		13.7	□□□□□ -0.22
SHMT2-233	ENST00000557529	FAM155A	B1AL88	458 aa	Predicted RBP	13.7	□□□□□ -0.22
SHMT2-233	ENST00000557529	SLC16A4	O15374	487 aa		13.7	□□□□□ -0.22
SHMT2-233	ENST00000557529	CCP110	O43303	1012 aa		13.7	□□□□□ -0.22
SHMT2-233	ENST00000557529	TLR2	O60603	784 aa		13.7	□□□□□ -0.22
SHMT2-233	ENST00000557529	TRIM21	P19474	475 aa	Known RBP	13.7	□□□□□ -0.22
SHMT2-233	ENST00000557529	PSMC2	P35998	433 aa	Known RBP	13.7	□□□□□ -0.22
SHMT2-233	ENST00000557529	NPTX2	P47972	431 aa		13.7	□□□□□ -0.22
SHMT2-233	ENST00000557529	FXR1	P51114	621 aa	Known RBP eCLIP	13.7	□□□□□ -0.22
SHMT2-233	ENST00000557529	GOLGA8F	Q08AF8	430 aa		13.7	□□□□□ -0.22
SHMT2-233	ENST00000557529	GOLGA8DP	Q0D2H9	430 aa		13.7	□□□□□ -0.22
SHMT2-233	ENST00000557529	IRF5	Q13568	498 aa		13.7	□□□□□ -0.22
SHMT2-233	ENST00000557529	PPP2R5A	Q15172	486 aa		13.7	□□□□□ -0.22
SHMT2-233	ENST00000557529	TARBP2	Q15633	366 aa	Known RBP	13.7	□□□□□ -0.22
SHMT2-233	ENST00000557529	HSDL1	Q3SXM5	330 aa		13.7	□□□□□ -0.22
SHMT2-233	ENST00000557529	CEP135	Q66GS9	1140 aa		13.7	□□□□□ -0.22
SHMT2-233	ENST00000557529	C17orf99	Q6UX52	265 aa		13.7	□□□□□ -0.22
SHMT2-233	ENST00000557529	C12orf56	Q8IXR9	622 aa		13.7	□□□□□ -0.22
SHMT2-233	ENST00000557529	TMEM161B	Q8NDZ6	487 aa		13.7	□□□□□ -0.22
SHMT2-233	ENST00000557529	CPLX3	Q8WVH0	158 aa		13.7	□□□□□ -0.22
SHMT2-233	ENST00000557529	POLR3F	Q9H1D9	316 aa	Predicted RBP	13.7	□□□□□ -0.22
SHMT2-233	ENST00000557529	ABHD16B	Q9H3Z7	469 aa		13.7	□□□□□ -0.22
SHMT2-233	ENST00000557529	SMARCAD1	Q9H4L7	1026 aa		13.7	□□□□□ -0.22
SHMT2-233	ENST00000557529	DHX33	Q9H6R0	707 aa	Known RBP	13.7	□□□□□ -0.22
SHMT2-233	ENST00000557529	KMT5A	Q9NQR1	393 aa		13.7	□□□□□ -0.22
SHMT2-233	ENST00000557529	PDGFC	Q9NRA1	345 aa		13.7	□□□□□ -0.22
SHMT2-233	ENST00000557529	ABT1	Q9ULW3	272 aa	Known RBP	13.7	□□□□□ -0.22
SHMT2-233	ENST00000557529	CAPN11	Q9UMQ6	739 aa		13.7	□□□□□ -0.22
SHMT2-233	ENST00000557529	FRMD4B	Q9Y2L6	1034 aa		13.7	□□□□□ -0.22
SHMT2-233	ENST00000557529		A0A1W2PQJ5	194 aa		13.69	□□□□□ -0.22
SHMT2-233	ENST00000557529	TMEM88B	A6NKF7	163 aa		13.69	□□□□□ -0.22
SHMT2-233	ENST00000557529	CLIC2	O15247	247 aa		13.69	□□□□□ -0.22
SHMT2-233	ENST00000557529	GAS2	O43903	313 aa	Known RBP	13.69	□□□□□ -0.22
SHMT2-233	ENST00000557529	AKAP3	O75969	853 aa		13.69	□□□□□ -0.22
SHMT2-233	ENST00000557529	SNAI1	O95863	264 aa	Predicted RBP	13.69	□□□□□ -0.22
SHMT2-233	ENST00000557529	XRCC5	P13010	732 aa	Known RBP	13.69	□□□□□ -0.22
SHMT2-233	ENST00000557529	FECH	P22830	423 aa		13.69	□□□□□ -0.22
SHMT2-233	ENST00000557529	ARHGAP1	Q07960	439 aa		13.69	□□□□□ -0.22
SHMT2-233	ENST00000557529	MAP2K5	Q13163	448 aa		13.69	□□□□□ -0.22
SHMT2-233	ENST00000557529	TSR1	Q2NL82	804 aa	Known RBP	13.69	□□□□□ -0.22
SHMT2-233	ENST00000557529	MORN1	Q5T089	497 aa		13.69	□□□□□ -0.22
SHMT2-233	ENST00000557529	TMEM139	Q8IV31	216 aa		13.69	□□□□□ -0.22
SHMT2-233	ENST00000557529	KSR1	Q8IVT5	923 aa		13.69	□□□□□ -0.22
SHMT2-233	ENST00000557529	C17orf53	Q8N3J3	647 aa	Predicted RBP	13.69	□□□□□ -0.22
SHMT2-233	ENST00000557529	ZNF397	Q8NF99	534 aa	Predicted RBP	13.69	□□□□□ -0.22
SHMT2-233	ENST00000557529	ATP8B4	Q8TF62	1192 aa		13.69	□□□□□ -0.22
SHMT2-233	ENST00000557529	KCNN1	Q92952	543 aa		13.69	□□□□□ -0.22
SHMT2-233	ENST00000557529	EMID1	Q96A84	441 aa	Predicted RBP	13.69	□□□□□ -0.22
SHMT2-233	ENST00000557529	TINF2	Q9BSI4	451 aa		13.69	□□□□□ -0.22
SHMT2-233	ENST00000557529	EDEM3	Q9BZQ6	932 aa		13.69	□□□□□ -0.22
SHMT2-233	ENST00000557529	KATNBL1	Q9H079	304 aa		13.69	□□□□□ -0.22
SHMT2-233	ENST00000557529	DMAC2	Q9NW81	257 aa		13.69	□□□□□ -0.22
SHMT2-233	ENST00000557529	TBX20	Q9UMR3	447 aa		13.69	□□□□□ -0.22
SHMT2-233	ENST00000557529	SIK3	Q9Y2K2	1263 aa		13.69	□□□□□ -0.22

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