RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 U2AF1L4Q8WU68 220 aaKnown RBP17.68■□□□□ 0.42
SHMT2-232ENST00000557487 CTNNBL1Q8WYA6 563 aaPredicted RBP17.68■□□□□ 0.42
SHMT2-232ENST00000557487 VTI1AQ96AJ9 217 aa17.68■□□□□ 0.42
SHMT2-232ENST00000557487 REEP2Q9BRK0 252 aa17.68■□□□□ 0.42
SHMT2-232ENST00000557487 FAM129AQ9BZQ8 928 aa17.68■□□□□ 0.42
SHMT2-232ENST00000557487 PARP2Q9UGN5 583 aa17.68■□□□□ 0.42
SHMT2-232ENST00000557487 SERPINB13Q9UIV8 391 aa17.68■□□□□ 0.42
SHMT2-232ENST00000557487 UBE4BO95155 1302 aa17.67■□□□□ 0.42
SHMT2-232ENST00000557487 TBCAO75347 108 aaKnown RBP17.67■□□□□ 0.42
SHMT2-232ENST00000557487 FOSP01100 380 aaPredicted RBP17.67■□□□□ 0.42
SHMT2-232ENST00000557487 GSTA1P08263 222 aa17.67■□□□□ 0.42
SHMT2-232ENST00000557487 ITGA4P13612 1032 aa17.67■□□□□ 0.42
SHMT2-232ENST00000557487 DRD4P21917 467 aa17.67■□□□□ 0.42
SHMT2-232ENST00000557487 HOXD13P35453 343 aa17.67■□□□□ 0.42
SHMT2-232ENST00000557487 CASP5P51878 434 aa17.67■□□□□ 0.42
SHMT2-232ENST00000557487 HADHBP55084 474 aaKnown RBP17.67■□□□□ 0.42
SHMT2-232ENST00000557487 GPSM2P81274 684 aa17.67■□□□□ 0.42
SHMT2-232ENST00000557487 CACNB1Q02641 598 aaPredicted RBP17.67■□□□□ 0.42
SHMT2-232ENST00000557487 PPATQ06203 517 aa17.67■□□□□ 0.42
SHMT2-232ENST00000557487 WLSQ5T9L3 541 aa17.67■□□□□ 0.42
SHMT2-232ENST00000557487 DUPD1Q68J44 220 aa17.67■□□□□ 0.42
SHMT2-232ENST00000557487 ANKS4BQ8N8V4 417 aa17.67■□□□□ 0.42
SHMT2-232ENST00000557487 ETNPPLQ8TBG4 499 aa17.67■□□□□ 0.42
SHMT2-232ENST00000557487 ZKSCAN4Q969J2 545 aaPredicted RBP17.67■□□□□ 0.42
SHMT2-232ENST00000557487 CCDC17Q96LX7 622 aa17.67■□□□□ 0.42
SHMT2-232ENST00000557487 XPO6Q96QU8 1125 aaKnown RBP17.67■□□□□ 0.42
SHMT2-232ENST00000557487 ERP44Q9BS26 406 aa17.67■□□□□ 0.42
SHMT2-232ENST00000557487 OSBPL7Q9BZF2 842 aa17.67■□□□□ 0.42
SHMT2-232ENST00000557487 STMN4Q9H169 189 aaPredicted RBP17.67■□□□□ 0.42
SHMT2-232ENST00000557487 CNOT8Q9UFF9 292 aaKnown RBP17.67■□□□□ 0.42
SHMT2-232ENST00000557487 CNOT7Q9UIV1 285 aaKnown RBP17.67■□□□□ 0.42
SHMT2-232ENST00000557487 POTEFA5A3E0 1075 aa17.66■□□□□ 0.42
SHMT2-232ENST00000557487 USP17L10C9JJH3 530 aa17.66■□□□□ 0.42
SHMT2-232ENST00000557487 ASAP2O43150 1006 aa17.66■□□□□ 0.42
SHMT2-232ENST00000557487 FGGP02679 453 aa17.66■□□□□ 0.42
SHMT2-232ENST00000557487 POTEIP0CG38 1075 aa17.66■□□□□ 0.42
SHMT2-232ENST00000557487 PSMC2P35998 433 aaKnown RBP17.66■□□□□ 0.42
SHMT2-232ENST00000557487 DR1Q01658 176 aa17.66■□□□□ 0.42
SHMT2-232ENST00000557487 ITIH4Q14624 930 aa17.66■□□□□ 0.42
SHMT2-232ENST00000557487 TCEAL1Q15170 157 aa17.66■□□□□ 0.42
SHMT2-232ENST00000557487 TCERG1LQ5VWI1 586 aa17.66■□□□□ 0.42
SHMT2-232ENST00000557487 POTEGQ6S5H5 508 aa17.66■□□□□ 0.42
SHMT2-232ENST00000557487 POTEEQ6S8J3 1075 aa17.66■□□□□ 0.42
SHMT2-232ENST00000557487 PARP9Q8IXQ6 854 aa17.66■□□□□ 0.42
SHMT2-232ENST00000557487 FUKQ8N0W3 1084 aa17.66■□□□□ 0.42
SHMT2-232ENST00000557487 CRYGNQ8WXF5 182 aa17.66■□□□□ 0.42
SHMT2-232ENST00000557487 POLR3CQ9BUI4 534 aaPredicted RBP17.66■□□□□ 0.42
SHMT2-232ENST00000557487 TMEM109Q9BVC6 243 aa17.66■□□□□ 0.42
SHMT2-232ENST00000557487 PABPC3Q9H361 631 aaKnown RBP17.66■□□□□ 0.42
SHMT2-232ENST00000557487 POLD4Q9HCU8 107 aa17.66■□□□□ 0.42
SHMT2-232ENST00000557487 DAGLAQ9Y4D2 1042 aa17.66■□□□□ 0.42
SHMT2-232ENST00000557487 ASTN1O14525 1302 aa17.66■□□□□ 0.42
SHMT2-232ENST00000557487 DDX3YO15523 660 aaKnown RBP17.66■□□□□ 0.42
SHMT2-232ENST00000557487 C21orf2O43822 256 aa17.66■□□□□ 0.42
SHMT2-232ENST00000557487 GGPS1O95749 300 aa17.66■□□□□ 0.42
SHMT2-232ENST00000557487 SERPINB2P05120 415 aa17.66■□□□□ 0.42
SHMT2-232ENST00000557487 TMOD1P28289 359 aa17.66■□□□□ 0.42
SHMT2-232ENST00000557487 SLC8A1P32418 973 aa17.66■□□□□ 0.42
SHMT2-232ENST00000557487 FLT3P36888 993 aa17.66■□□□□ 0.42
SHMT2-232ENST00000557487 CYB5D1Q6P9G0 228 aa17.66■□□□□ 0.42
SHMT2-232ENST00000557487 NEK9Q8TD19 979 aa17.66■□□□□ 0.42
SHMT2-232ENST00000557487 ATP8B4Q8TF62 1192 aa17.66■□□□□ 0.42
SHMT2-232ENST00000557487 DCAF4Q8WV16 495 aa17.66■□□□□ 0.42
SHMT2-232ENST00000557487 BORCS6Q96GS4 357 aa17.66■□□□□ 0.42
SHMT2-232ENST00000557487 RUNDC3BQ96NL0 473 aa17.66■□□□□ 0.42
SHMT2-232ENST00000557487 GOLPH3Q9H4A6 298 aa17.66■□□□□ 0.42
SHMT2-232ENST00000557487 NRXN2Q9P2S2 1712 aa17.65■□□□□ 0.42
SHMT2-232ENST00000557487 MIF4GDA9UHW6 222 aaKnown RBP17.65■□□□□ 0.42
SHMT2-232ENST00000557487 EVI5O60447 810 aa17.65■□□□□ 0.42
SHMT2-232ENST00000557487 BUB1BO60566 1050 aaPredicted RBP17.65■□□□□ 0.42
SHMT2-232ENST00000557487 EYA4O95677 639 aa17.65■□□□□ 0.42
SHMT2-232ENST00000557487 SPATA31C1P0DKV0 1188 aa17.65■□□□□ 0.42
SHMT2-232ENST00000557487 SCTRP47872 440 aa17.65■□□□□ 0.42
SHMT2-232ENST00000557487 PLS1Q14651 629 aa17.65■□□□□ 0.42
SHMT2-232ENST00000557487 QPCTQ16769 361 aa17.65■□□□□ 0.42
SHMT2-232ENST00000557487 TTBK2Q6IQ55 1244 aa17.65■□□□□ 0.42
SHMT2-232ENST00000557487 RHOT2Q8IXI1 618 aa17.65■□□□□ 0.42
SHMT2-232ENST00000557487 CNBD1Q8NA66 436 aa17.65■□□□□ 0.42
SHMT2-232ENST00000557487 CCDC197Q8NCU1 140 aa17.65■□□□□ 0.42
SHMT2-232ENST00000557487 SLC35G2Q8TBE7 412 aa17.65■□□□□ 0.42
SHMT2-232ENST00000557487 CCT6BQ92526 530 aa17.65■□□□□ 0.42
SHMT2-232ENST00000557487 RPGRQ92834 1020 aaKnown RBP17.65■□□□□ 0.42
SHMT2-232ENST00000557487 JPH2Q9BR39 696 aaPredicted RBP17.65■□□□□ 0.42
SHMT2-232ENST00000557487 CXorf56Q9H5V9 222 aa17.65■□□□□ 0.42
SHMT2-232ENST00000557487 CCDC134Q9H6E4 229 aa17.65■□□□□ 0.42
SHMT2-232ENST00000557487 ZDHHC18Q9NUE0 388 aa17.65■□□□□ 0.42
SHMT2-232ENST00000557487 PFASO15067 1338 aa17.65■□□□□ 0.42
SHMT2-232ENST00000557487 PODXLO00592 558 aa17.64■□□□□ 0.42
SHMT2-232ENST00000557487 TGFB2P61812 414 aa17.64■□□□□ 0.42
SHMT2-232ENST00000557487 ARHGAP4P98171 946 aa17.64■□□□□ 0.42
SHMT2-232ENST00000557487 PABPC4Q13310 644 aaKnown RBP eCLIP17.64■□□□□ 0.428e-7■■■■■ 32.8
SHMT2-232ENST00000557487 DENND2CQ68D51 928 aa17.64■□□□□ 0.42
SHMT2-232ENST00000557487 BTNL9Q6UXG8 535 aa17.64■□□□□ 0.42
SHMT2-232ENST00000557487 STXBP4Q6ZWJ1 553 aa17.64■□□□□ 0.42
SHMT2-232ENST00000557487 CCDC24Q8N4L8 307 aa17.64■□□□□ 0.42
SHMT2-232ENST00000557487 LNX1Q8TBB1 728 aaPredicted RBP17.64■□□□□ 0.42
SHMT2-232ENST00000557487 GJA10Q969M2 543 aa17.64■□□□□ 0.42
SHMT2-232ENST00000557487 SYT11Q9BT88 431 aa17.64■□□□□ 0.42
SHMT2-232ENST00000557487 PCDHA1Q9Y5I3 950 aa17.64■□□□□ 0.42
SHMT2-232ENST00000557487 GREB1LQ9C091 1923 aaPredicted RBP17.64■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms