RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 BLIDQ8IZY5 108 aa12.48□□□□□ -0.41
CCDC88C-213ENST00000557455 COLGALT1Q8NBJ5 622 aa12.48□□□□□ -0.41
CCDC88C-213ENST00000557455 RDM1Q8NG50 284 aa12.48□□□□□ -0.41
CCDC88C-213ENST00000557455 ZNF668Q96K58 619 aaPredicted RBP12.48□□□□□ -0.41
CCDC88C-213ENST00000557455 MSLNLQ96KJ4 702 aa12.48□□□□□ -0.41
CCDC88C-213ENST00000557455 SCLT1Q96NL6 688 aa12.48□□□□□ -0.41
CCDC88C-213ENST00000557455 LARP6Q9BRS8 491 aaKnown RBP12.48□□□□□ -0.41
CCDC88C-213ENST00000557455 TM6SF1Q9BZW5 370 aa12.48□□□□□ -0.41
CCDC88C-213ENST00000557455 TMEM117Q9H0C3 514 aa12.48□□□□□ -0.41
CCDC88C-213ENST00000557455 ADAMTS10Q9H324 1103 aa12.48□□□□□ -0.41
CCDC88C-213ENST00000557455 TLE6Q9H808 572 aa12.48□□□□□ -0.41
CCDC88C-213ENST00000557455 TLR9Q9NR96 1032 aa12.48□□□□□ -0.41
CCDC88C-213ENST00000557455 HCSTQ9UBK5 93 aa12.48□□□□□ -0.41
CCDC88C-213ENST00000557455 PCDHGC5Q9Y5F6 944 aa12.48□□□□□ -0.41
CCDC88C-213ENST00000557455 CYP3A7-CYP3A51PA0A087WV96 503 aa12.47□□□□□ -0.41
CCDC88C-213ENST00000557455 TDP2O95551 362 aa12.47□□□□□ -0.41
CCDC88C-213ENST00000557455 EYA4O95677 639 aa12.47□□□□□ -0.41
CCDC88C-213ENST00000557455 CYP3A7P24462 503 aa12.47□□□□□ -0.41
CCDC88C-213ENST00000557455 COASYQ13057 564 aa12.47□□□□□ -0.41
CCDC88C-213ENST00000557455 GALNT17Q6IS24 598 aa12.47□□□□□ -0.41
CCDC88C-213ENST00000557455 PDE12Q6L8Q7 609 aaKnown RBP12.47□□□□□ -0.41
CCDC88C-213ENST00000557455 ABI1Q8IZP0 508 aa12.47□□□□□ -0.41
CCDC88C-213ENST00000557455 FAM177A1Q8N128 213 aaPredicted RBP12.47□□□□□ -0.41
CCDC88C-213ENST00000557455 DAGLBQ8NCG7 672 aa12.47□□□□□ -0.41
CCDC88C-213ENST00000557455 NLRP7Q8WX94 980 aa12.47□□□□□ -0.41
CCDC88C-213ENST00000557455 CWH43Q9H720 699 aa12.47□□□□□ -0.41
CCDC88C-213ENST00000557455 PDRG1Q9NUG6 133 aa12.47□□□□□ -0.41
CCDC88C-213ENST00000557455 CLEC1BQ9P126 229 aa12.47□□□□□ -0.41
CCDC88C-213ENST00000557455 SEPT9Q9UHD8 586 aaPredicted RBP12.47□□□□□ -0.41
CCDC88C-213ENST00000557455 FSD2A1L4K1 749 aa12.46□□□□□ -0.41
CCDC88C-213ENST00000557455 M0R2N6 131 aa12.46□□□□□ -0.41
CCDC88C-213ENST00000557455 PER2O15055 1255 aa12.46□□□□□ -0.41
CCDC88C-213ENST00000557455 GLP2RO95838 553 aa12.46□□□□□ -0.41
CCDC88C-213ENST00000557455 DARSP14868 501 aaKnown RBP12.46□□□□□ -0.41
CCDC88C-213ENST00000557455 DNM2P50570 870 aa12.46□□□□□ -0.41
CCDC88C-213ENST00000557455 ERVFC1P60507 584 aa12.46□□□□□ -0.41
CCDC88C-213ENST00000557455 CDC42EP1Q00587 391 aa12.46□□□□□ -0.41
CCDC88C-213ENST00000557455 PLCB3Q01970 1234 aa12.46□□□□□ -0.41
CCDC88C-213ENST00000557455 NONOQ15233 471 aaKnown RBP eCLIP12.46□□□□□ -0.41
CCDC88C-213ENST00000557455 TARBP2Q15633 366 aaKnown RBP12.46□□□□□ -0.41
CCDC88C-213ENST00000557455 MTERF2Q49AM1 385 aa12.46□□□□□ -0.41
CCDC88C-213ENST00000557455 XKR3Q5GH77 459 aa12.46□□□□□ -0.41
CCDC88C-213ENST00000557455 MOXD1Q6UVY6 613 aa12.46□□□□□ -0.41
CCDC88C-213ENST00000557455 ECHDC2Q86YB7 292 aa12.46□□□□□ -0.41
CCDC88C-213ENST00000557455 LRRC43Q8N309 656 aa12.46□□□□□ -0.41
CCDC88C-213ENST00000557455 RNF169Q8NCN4 708 aa12.46□□□□□ -0.41
CCDC88C-213ENST00000557455 SMRP1Q8NCR6 262 aa12.46□□□□□ -0.41
CCDC88C-213ENST00000557455 CASD1Q96PB1 797 aa12.46□□□□□ -0.41
CCDC88C-213ENST00000557455 NIFKQ9BYG3 293 aaKnown RBP12.46□□□□□ -0.41
CCDC88C-213ENST00000557455 DACT1Q9NYF0 836 aa12.46□□□□□ -0.41
CCDC88C-213ENST00000557455 DDX25Q9UHL0 483 aaKnown RBP12.46□□□□□ -0.41
CCDC88C-213ENST00000557455 PUF60Q9UHX1 559 aaKnown RBP12.46□□□□□ -0.41
CCDC88C-213ENST00000557455 BARX2Q9UMQ3 279 aaPredicted RBP12.46□□□□□ -0.41
CCDC88C-213ENST00000557455 LZTS1Q9Y250 596 aa12.46□□□□□ -0.41
CCDC88C-213ENST00000557455 CDKL5O76039 1030 aa12.45□□□□□ -0.42
CCDC88C-213ENST00000557455 FGFR4P22455 802 aa12.45□□□□□ -0.42
CCDC88C-213ENST00000557455 DRP2Q13474 957 aa12.45□□□□□ -0.42
CCDC88C-213ENST00000557455 NPY5RQ15761 445 aa12.45□□□□□ -0.42
CCDC88C-213ENST00000557455 DUSP6Q16828 381 aa12.45□□□□□ -0.42
CCDC88C-213ENST00000557455 INF2Q27J81 1249 aa12.45□□□□□ -0.42
CCDC88C-213ENST00000557455 PLPP4Q5VZY2 271 aa12.45□□□□□ -0.42
CCDC88C-213ENST00000557455 KCNT2Q6UVM3 1135 aa12.45□□□□□ -0.42
CCDC88C-213ENST00000557455 B3GNT9Q6UX72 402 aa12.45□□□□□ -0.42
CCDC88C-213ENST00000557455 LRRC55Q6ZSA7 311 aa12.45□□□□□ -0.42
CCDC88C-213ENST00000557455 KRT25Q7Z3Z0 450 aa12.45□□□□□ -0.42
CCDC88C-213ENST00000557455 RNF135Q8IUD6 432 aa12.45□□□□□ -0.42
CCDC88C-213ENST00000557455 ETNPPLQ8TBG4 499 aa12.45□□□□□ -0.42
CCDC88C-213ENST00000557455 MRPS27Q92552 414 aaKnown RBP12.45□□□□□ -0.42
CCDC88C-213ENST00000557455 MBOAT7Q96N66 472 aa12.45□□□□□ -0.42
CCDC88C-213ENST00000557455 ZNF558Q96NG5 402 aa12.45□□□□□ -0.42
CCDC88C-213ENST00000557455 AIFM3Q96NN9 605 aa12.45□□□□□ -0.42
CCDC88C-213ENST00000557455 CDCA3Q99618 268 aaPredicted RBP12.45□□□□□ -0.42
CCDC88C-213ENST00000557455 SH2D3AQ9BRG2 576 aa12.45□□□□□ -0.42
CCDC88C-213ENST00000557455 GCOM2Q9BZD3 368 aaPredicted RBP12.45□□□□□ -0.42
CCDC88C-213ENST00000557455 ENTPD7Q9NQZ7 604 aa12.45□□□□□ -0.42
CCDC88C-213ENST00000557455 RNF19AQ9NV58 838 aa12.45□□□□□ -0.42
CCDC88C-213ENST00000557455 MUTYHQ9UIF7 546 aa12.45□□□□□ -0.42
CCDC88C-213ENST00000557455 KCNJ14Q9UNX9 436 aa12.45□□□□□ -0.42
CCDC88C-213ENST00000557455 IGKV6-21A0A0C4DH24 114 aa12.44□□□□□ -0.42
CCDC88C-213ENST00000557455 A0A0U1RQF3 1178 aa12.44□□□□□ -0.42
CCDC88C-213ENST00000557455 CCDC194A0A1B0GVG4 234 aa12.44□□□□□ -0.42
CCDC88C-213ENST00000557455 TMEM150BA6NC51 233 aa12.44□□□□□ -0.42
CCDC88C-213ENST00000557455 DDX11L8A8MPP1 907 aa12.44□□□□□ -0.42
CCDC88C-213ENST00000557455 FSCN2O14926 492 aa12.44□□□□□ -0.42
CCDC88C-213ENST00000557455 CSDE1O75534 798 aaKnown RBP12.44□□□□□ -0.42
CCDC88C-213ENST00000557455 STBD1O95210 358 aa12.44□□□□□ -0.42
CCDC88C-213ENST00000557455 EOMESO95936 686 aa12.44□□□□□ -0.42
CCDC88C-213ENST00000557455 SRGAP2BP0DMP2 458 aa12.44□□□□□ -0.42
CCDC88C-213ENST00000557455 XBP1P17861 261 aa12.44□□□□□ -0.42
CCDC88C-213ENST00000557455 PPM1AP35813 382 aa12.44□□□□□ -0.42
CCDC88C-213ENST00000557455 KRT17Q04695 432 aa12.44□□□□□ -0.42
CCDC88C-213ENST00000557455 LETM2Q2VYF4 491 aa12.44□□□□□ -0.42
CCDC88C-213ENST00000557455 CLLU1OSQ5K130 101 aa12.44□□□□□ -0.42
CCDC88C-213ENST00000557455 CEP89Q96ST8 783 aa12.44□□□□□ -0.42
CCDC88C-213ENST00000557455 TCF25Q9BQ70 676 aa12.44□□□□□ -0.42
CCDC88C-213ENST00000557455 SLKQ9H2G2 1235 aaPredicted RBP12.44□□□□□ -0.42
CCDC88C-213ENST00000557455 NGRNQ9NPE2 291 aaKnown RBP12.44□□□□□ -0.42
CCDC88C-213ENST00000557455 CHST12Q9NRB3 414 aa12.44□□□□□ -0.42
CCDC88C-213ENST00000557455 USP15Q9Y4E8 981 aaPredicted RBP12.44□□□□□ -0.42
CCDC88C-213ENST00000557455 TRIOO75962 3097 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms