RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 FERMT3Q86UX7 667 aa12.95□□□□□ -0.34
CCDC88C-208ENST00000554165 CATSPER3Q86XQ3 398 aa12.95□□□□□ -0.34
CCDC88C-208ENST00000554165 RHPN2Q8IUC4 686 aa12.95□□□□□ -0.34
CCDC88C-208ENST00000554165 CRIPAKQ8N1N5 446 aa12.95□□□□□ -0.34
CCDC88C-208ENST00000554165 MAFAQ8NHW3 353 aaPredicted RBP12.95□□□□□ -0.34
CCDC88C-208ENST00000554165 NLRP7Q8WX94 980 aa12.95□□□□□ -0.34
CCDC88C-208ENST00000554165 PPM1EQ8WY54 764 aa12.95□□□□□ -0.34
CCDC88C-208ENST00000554165 SCLT1Q96NL6 688 aa12.95□□□□□ -0.34
CCDC88C-208ENST00000554165 YME1L1Q96TA2 773 aa12.95□□□□□ -0.34
CCDC88C-208ENST00000554165 ADAM2Q99965 735 aa12.95□□□□□ -0.34
CCDC88C-208ENST00000554165 FDXACB1Q9BRP7 624 aaPredicted RBP12.95□□□□□ -0.34
CCDC88C-208ENST00000554165 DHX33Q9H6R0 707 aaKnown RBP12.95□□□□□ -0.34
CCDC88C-208ENST00000554165 XPNPEP1Q9NQW7 623 aa12.95□□□□□ -0.34
CCDC88C-208ENST00000554165 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.95□□□□□ -0.34
CCDC88C-208ENST00000554165 KIF3AQ9Y496 699 aa12.95□□□□□ -0.34
CCDC88C-208ENST00000554165 INSL6Q9Y581 213 aa12.95□□□□□ -0.34
CCDC88C-208ENST00000554165 MYO7AQ13402 2215 aa12.94□□□□□ -0.34
CCDC88C-208ENST00000554165 COL4A6Q14031 1691 aa12.94□□□□□ -0.34
CCDC88C-208ENST00000554165 LYPLA2O95372 231 aa12.94□□□□□ -0.34
CCDC88C-208ENST00000554165 EIF4BP23588 611 aaKnown RBP12.94□□□□□ -0.34
CCDC88C-208ENST00000554165 CDC25AP30304 524 aa12.94□□□□□ -0.34
CCDC88C-208ENST00000554165 POLGP54098 1239 aaPredicted RBP12.94□□□□□ -0.34
CCDC88C-208ENST00000554165 DSC3Q14574 896 aa12.94□□□□□ -0.34
CCDC88C-208ENST00000554165 EMC2Q15006 297 aa12.94□□□□□ -0.34
CCDC88C-208ENST00000554165 CCDC85BQ15834 202 aaPredicted RBP12.94□□□□□ -0.34
CCDC88C-208ENST00000554165 SP7Q8TDD2 431 aaPredicted RBP12.94□□□□□ -0.34
CCDC88C-208ENST00000554165 GDPD5Q8WTR4 605 aa12.94□□□□□ -0.34
CCDC88C-208ENST00000554165 PRPF31Q8WWY3 499 aaKnown RBP12.94□□□□□ -0.34
CCDC88C-208ENST00000554165 NLRP4Q96MN2 994 aa12.94□□□□□ -0.34
CCDC88C-208ENST00000554165 PRDM6Q9NQX0 595 aa12.94□□□□□ -0.34
CCDC88C-208ENST00000554165 DENND3A2RUS2 1198 aa12.93□□□□□ -0.34
CCDC88C-208ENST00000554165 VPS37CA5D8V6 355 aaPredicted RBP12.93□□□□□ -0.34
CCDC88C-208ENST00000554165 C9IYK1 514 aa12.93□□□□□ -0.34
CCDC88C-208ENST00000554165 K7ELQ4 463 aaPredicted RBP12.93□□□□□ -0.34
CCDC88C-208ENST00000554165 GPR182O15218 404 aa12.93□□□□□ -0.34
CCDC88C-208ENST00000554165 LPXNO60711 386 aa12.93□□□□□ -0.34
CCDC88C-208ENST00000554165 DKC1O60832 514 aaKnown RBP eCLIP12.93□□□□□ -0.345e-9■■■■■ 40.8
CCDC88C-208ENST00000554165 SRGAP2CP0DJJ0 459 aa12.93□□□□□ -0.34
CCDC88C-208ENST00000554165 DNM2P50570 870 aa12.93□□□□□ -0.34
CCDC88C-208ENST00000554165 ERVK-21P61565 698 aa12.93□□□□□ -0.34
CCDC88C-208ENST00000554165 GRB10Q13322 594 aa12.93□□□□□ -0.34
CCDC88C-208ENST00000554165 PAN2Q504Q3 1202 aaKnown RBP12.93□□□□□ -0.34
CCDC88C-208ENST00000554165 OTUD6AQ7L8S5 288 aa12.93□□□□□ -0.34
CCDC88C-208ENST00000554165 ASAP3Q8TDY4 903 aa12.93□□□□□ -0.34
CCDC88C-208ENST00000554165 SLC7A3Q8WY07 619 aa12.93□□□□□ -0.34
CCDC88C-208ENST00000554165 TGS1Q96RS0 853 aaKnown RBP12.93□□□□□ -0.34
CCDC88C-208ENST00000554165 GAS2L1Q99501 681 aaPredicted RBP12.93□□□□□ -0.34
CCDC88C-208ENST00000554165 FTHL17Q9BXU8 183 aa12.93□□□□□ -0.34
CCDC88C-208ENST00000554165 MINDY3Q9H8M7 445 aa12.93□□□□□ -0.34
CCDC88C-208ENST00000554165 RC3H2Q9HBD1 1191 aaKnown RBP12.93□□□□□ -0.34
CCDC88C-208ENST00000554165 POLD4Q9HCU8 107 aa12.93□□□□□ -0.34
CCDC88C-208ENST00000554165 HCSTQ9UBK5 93 aa12.93□□□□□ -0.34
CCDC88C-208ENST00000554165 A0A0C4DFX4 3053 aa12.92□□□□□ -0.34
CCDC88C-208ENST00000554165 DGKIO75912 1065 aa12.92□□□□□ -0.34
CCDC88C-208ENST00000554165 LINC00271P0C7V0 271 aa12.92□□□□□ -0.34
CCDC88C-208ENST00000554165 FGFR1P11362 822 aa12.92□□□□□ -0.34
CCDC88C-208ENST00000554165 SYT1P21579 422 aa12.92□□□□□ -0.34
CCDC88C-208ENST00000554165 RFC5P40937 340 aa12.92□□□□□ -0.34
CCDC88C-208ENST00000554165 RARRES1P49788 294 aa12.92□□□□□ -0.34
CCDC88C-208ENST00000554165 FXR2P51116 673 aaKnown RBP eCLIP12.92□□□□□ -0.34
CCDC88C-208ENST00000554165 LAMTOR4Q0VGL1 99 aa12.92□□□□□ -0.34
CCDC88C-208ENST00000554165 ORC2Q13416 577 aaPredicted RBP12.92□□□□□ -0.34
CCDC88C-208ENST00000554165 FAM102BQ5T8I3 360 aa12.92□□□□□ -0.34
CCDC88C-208ENST00000554165 FAM173BQ6P4H8 233 aa12.92□□□□□ -0.34
CCDC88C-208ENST00000554165 MAEAQ7L5Y9 396 aa12.92□□□□□ -0.34
CCDC88C-208ENST00000554165 NPAS4Q8IUM7 802 aa12.92□□□□□ -0.34
CCDC88C-208ENST00000554165 MICALL1Q8N3F8 863 aa12.92□□□□□ -0.34
CCDC88C-208ENST00000554165 NEK9Q8TD19 979 aa12.92□□□□□ -0.34
CCDC88C-208ENST00000554165 ZNF689Q96CS4 500 aaPredicted RBP12.92□□□□□ -0.34
CCDC88C-208ENST00000554165 POLR3CQ9BUI4 534 aaPredicted RBP12.92□□□□□ -0.34
CCDC88C-208ENST00000554165 GCOM2Q9BZD3 368 aaPredicted RBP12.92□□□□□ -0.34
CCDC88C-208ENST00000554165 IFT122Q9HBG6 1241 aa12.92□□□□□ -0.34
CCDC88C-208ENST00000554165 TUFT1Q9NNX1 390 aa12.92□□□□□ -0.34
CCDC88C-208ENST00000554165 GPRC5CQ9NQ84 441 aa12.92□□□□□ -0.34
CCDC88C-208ENST00000554165 RGS18Q9NS28 235 aa12.92□□□□□ -0.34
CCDC88C-208ENST00000554165 ANKEF1Q9NU02 776 aa12.92□□□□□ -0.34
CCDC88C-208ENST00000554165 LRWD1Q9UFC0 647 aa12.92□□□□□ -0.34
CCDC88C-208ENST00000554165 COL4A3BPQ9Y5P4 624 aa12.92□□□□□ -0.34
CCDC88C-208ENST00000554165 ARID2Q68CP9 1835 aa12.92□□□□□ -0.34
CCDC88C-208ENST00000554165 USO1O60763 962 aaKnown RBP12.91□□□□□ -0.34
CCDC88C-208ENST00000554165 RPA1P27694 616 aa12.91□□□□□ -0.34
CCDC88C-208ENST00000554165 CCT6AP40227 531 aaKnown RBP12.91□□□□□ -0.34
CCDC88C-208ENST00000554165 SARSP49591 514 aaKnown RBP12.91□□□□□ -0.34
CCDC88C-208ENST00000554165 EPC2Q52LR7 807 aa12.91□□□□□ -0.34
CCDC88C-208ENST00000554165 RILPL1Q5EBL4 403 aa12.91□□□□□ -0.34
CCDC88C-208ENST00000554165 IGSF22Q8N9C0 903 aa12.91□□□□□ -0.34
CCDC88C-208ENST00000554165 PSPC1Q8WXF1 523 aaKnown RBP12.91□□□□□ -0.34
CCDC88C-208ENST00000554165 MTRQ99707 1265 aa12.91□□□□□ -0.34
CCDC88C-208ENST00000554165 MMTAG2Q9BU76 263 aaKnown RBP12.91□□□□□ -0.34
CCDC88C-208ENST00000554165 RNF19AQ9NV58 838 aa12.91□□□□□ -0.34
CCDC88C-208ENST00000554165 MTCH2Q9Y6C9 303 aa12.91□□□□□ -0.34
CCDC88C-208ENST00000554165 MRPL42Q9Y6G3 142 aaKnown RBP12.91□□□□□ -0.34
CCDC88C-208ENST00000554165 REV3LO60673 3130 aa12.91□□□□□ -0.34
CCDC88C-208ENST00000554165 ADGRA3Q8IWK6 1321 aa12.9□□□□□ -0.34
CCDC88C-208ENST00000554165 FAM189BP81408 668 aa12.9□□□□□ -0.34
CCDC88C-208ENST00000554165 ATP2C1P98194 919 aaPredicted RBP12.9□□□□□ -0.34
CCDC88C-208ENST00000554165 GRIN1Q05586 938 aa12.9□□□□□ -0.34
CCDC88C-208ENST00000554165 BTG3Q14201 252 aaPredicted RBP12.9□□□□□ -0.34
CCDC88C-208ENST00000554165 LONRF3Q496Y0 759 aa12.9□□□□□ -0.34
CCDC88C-208ENST00000554165 SLC24A5Q71RS6 500 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms