RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 TOB1P50616 345 aaPredicted RBP17.12■□□□□ 0.33
SHMT2-204ENST00000553324 FXR2P51116 673 aaKnown RBP eCLIP17.12■□□□□ 0.33
SHMT2-204ENST00000553324 PTGDRQ13258 359 aa17.12■□□□□ 0.33
SHMT2-204ENST00000553324 HAUS3Q68CZ6 603 aa17.12■□□□□ 0.33
SHMT2-204ENST00000553324 FAM228AQ86W67 206 aa17.12■□□□□ 0.33
SHMT2-204ENST00000553324 RHPN2Q8IUC4 686 aa17.12■□□□□ 0.33
SHMT2-204ENST00000553324 C4orf32Q8N8J7 132 aa17.12■□□□□ 0.33
SHMT2-204ENST00000553324 PSPC1Q8WXF1 523 aaKnown RBP17.12■□□□□ 0.33
SHMT2-204ENST00000553324 NACC1Q96RE7 527 aa17.12■□□□□ 0.33
SHMT2-204ENST00000553324 ADAM2Q99965 735 aa17.12■□□□□ 0.33
SHMT2-204ENST00000553324 CERS4Q9HA82 394 aa17.12■□□□□ 0.33
SHMT2-204ENST00000553324 LRFN2Q9ULH4 789 aa17.12■□□□□ 0.33
SHMT2-204ENST00000553324 RWDD3Q9Y3V2 267 aa17.12■□□□□ 0.33
SHMT2-204ENST00000553324 PCDHB7Q9Y5E2 793 aa17.12■□□□□ 0.33
SHMT2-204ENST00000553324 CHD9Q3L8U1 2897 aa17.11■□□□□ 0.33
SHMT2-204ENST00000553324 POTEMA6NI47 508 aa17.11■□□□□ 0.33
SHMT2-204ENST00000553324 DGAT1O75907 488 aa17.11■□□□□ 0.33
SHMT2-204ENST00000553324 DGKIO75912 1065 aa17.11■□□□□ 0.33
SHMT2-204ENST00000553324 RPA1P27694 616 aa17.11■□□□□ 0.33
SHMT2-204ENST00000553324 PRPHP41219 470 aa17.11■□□□□ 0.33
SHMT2-204ENST00000553324 DRP2Q13474 957 aa17.11■□□□□ 0.33
SHMT2-204ENST00000553324 MXD4Q14582 209 aaPredicted RBP17.11■□□□□ 0.33
SHMT2-204ENST00000553324 CATSPER3Q86XQ3 398 aa17.11■□□□□ 0.33
SHMT2-204ENST00000553324 FIBCD1Q8N539 461 aa17.11■□□□□ 0.33
SHMT2-204ENST00000553324 MTRQ99707 1265 aa17.11■□□□□ 0.33
SHMT2-204ENST00000553324 CHST12Q9NRB3 414 aa17.11■□□□□ 0.33
SHMT2-204ENST00000553324 LMCD1Q9NZU5 365 aa17.11■□□□□ 0.33
SHMT2-204ENST00000553324 PCDHB6Q9Y5E3 794 aa17.11■□□□□ 0.33
SHMT2-204ENST00000553324 SPATA31C1P0DKV0 1188 aa17.1■□□□□ 0.33
SHMT2-204ENST00000553324 SFPQP23246 707 aaKnown RBP eCLIP17.1■□□□□ 0.33
SHMT2-204ENST00000553324 FAM189BP81408 668 aa17.1■□□□□ 0.33
SHMT2-204ENST00000553324 ADGRE1Q14246 886 aa17.1■□□□□ 0.33
SHMT2-204ENST00000553324 DTHD1Q6ZMT9 781 aa17.1■□□□□ 0.33
SHMT2-204ENST00000553324 CRIPAKQ8N1N5 446 aa17.1■□□□□ 0.33
SHMT2-204ENST00000553324 ZNF579Q8NAF0 562 aaKnown RBP17.1■□□□□ 0.33
SHMT2-204ENST00000553324 PRPF31Q8WWY3 499 aaKnown RBP17.1■□□□□ 0.33
SHMT2-204ENST00000553324 LINC01599Q8WXQ3 324 aa17.1■□□□□ 0.33
SHMT2-204ENST00000553324 ZNF689Q96CS4 500 aaPredicted RBP17.1■□□□□ 0.33
SHMT2-204ENST00000553324 ELAC1Q9H777 363 aaKnown RBP17.1■□□□□ 0.33
SHMT2-204ENST00000553324 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.1■□□□□ 0.33
SHMT2-204ENST00000553324 DACT1Q9NYF0 836 aa17.1■□□□□ 0.33
SHMT2-204ENST00000553324 LRWD1Q9UFC0 647 aa17.1■□□□□ 0.33
SHMT2-204ENST00000553324 DBR1Q9UK59 544 aaKnown RBP17.1■□□□□ 0.33
SHMT2-204ENST00000553324 COL4A3BPQ9Y5P4 624 aa17.1■□□□□ 0.33
SHMT2-204ENST00000553324 A0A087WZ62 844 aa17.09■□□□□ 0.33
SHMT2-204ENST00000553324 K7ELQ4 463 aaPredicted RBP17.09■□□□□ 0.33
SHMT2-204ENST00000553324 ZBTB39O15060 712 aa17.09■□□□□ 0.33
SHMT2-204ENST00000553324 ARHGEF15O94989 841 aa17.09■□□□□ 0.33
SHMT2-204ENST00000553324 RB1P06400 928 aa17.09■□□□□ 0.33
SHMT2-204ENST00000553324 RARRES1P49788 294 aa17.09■□□□□ 0.33
SHMT2-204ENST00000553324 BTG3Q14201 252 aaPredicted RBP17.09■□□□□ 0.33
SHMT2-204ENST00000553324 NBR1Q14596 966 aa17.09■□□□□ 0.33
SHMT2-204ENST00000553324 EMC2Q15006 297 aa17.09■□□□□ 0.33
SHMT2-204ENST00000553324 PCBP1Q15365 356 aaKnown RBP eCLIP17.09■□□□□ 0.33
SHMT2-204ENST00000553324 BRAPQ7Z569 592 aa17.09■□□□□ 0.33
SHMT2-204ENST00000553324 SRGAP1Q7Z6B7 1085 aa17.09■□□□□ 0.33
SHMT2-204ENST00000553324 SLC17A8Q8NDX2 589 aa17.09■□□□□ 0.33
SHMT2-204ENST00000553324 SNX21Q969T3 373 aa17.09■□□□□ 0.33
SHMT2-204ENST00000553324 TMEM143Q96AN5 459 aa17.09■□□□□ 0.33
SHMT2-204ENST00000553324 NLRP4Q96MN2 994 aa17.09■□□□□ 0.33
SHMT2-204ENST00000553324 FDXACB1Q9BRP7 624 aaPredicted RBP17.09■□□□□ 0.33
SHMT2-204ENST00000553324 ATP6V0A4Q9HBG4 840 aa17.09■□□□□ 0.33
SHMT2-204ENST00000553324 CHD7Q9P2D1 2997 aa17.08■□□□□ 0.33
SHMT2-204ENST00000553324 ADGRA3Q8IWK6 1321 aa17.08■□□□□ 0.32
SHMT2-204ENST00000553324 C9IYK1 514 aa17.08■□□□□ 0.32
SHMT2-204ENST00000553324 MGEA5O60502 916 aa17.08■□□□□ 0.32
SHMT2-204ENST00000553324 POU5F1BQ06416 359 aa17.08■□□□□ 0.32
SHMT2-204ENST00000553324 LAMTOR4Q0VGL1 99 aa17.08■□□□□ 0.32
SHMT2-204ENST00000553324 DSC3Q14574 896 aa17.08■□□□□ 0.32
SHMT2-204ENST00000553324 EPC2Q52LR7 807 aa17.08■□□□□ 0.32
SHMT2-204ENST00000553324 FERMT3Q86UX7 667 aa17.08■□□□□ 0.32
SHMT2-204ENST00000553324 TMEM192Q8IY95 271 aa17.08■□□□□ 0.32
SHMT2-204ENST00000553324 CMTR2Q8IYT2 770 aaKnown RBP17.08■□□□□ 0.32
SHMT2-204ENST00000553324 IGSF22Q8N9C0 903 aa17.08■□□□□ 0.32
SHMT2-204ENST00000553324 FBXO22Q8NEZ5 403 aa17.08■□□□□ 0.32
SHMT2-204ENST00000553324 PIGOQ8TEQ8 1089 aa17.08■□□□□ 0.32
SHMT2-204ENST00000553324 ZNF668Q96K58 619 aaPredicted RBP17.08■□□□□ 0.32
SHMT2-204ENST00000553324 TMEM161AQ9NX61 479 aa17.08■□□□□ 0.32
SHMT2-204ENST00000553324 HOXA2O43364 376 aa17.07■□□□□ 0.32
SHMT2-204ENST00000553324 MED24O75448 989 aa17.07■□□□□ 0.32
SHMT2-204ENST00000553324 EOMESO95936 686 aa17.07■□□□□ 0.32
SHMT2-204ENST00000553324 BMP15O95972 392 aa17.07■□□□□ 0.32
SHMT2-204ENST00000553324 SRGAP2CP0DJJ0 459 aa17.07■□□□□ 0.32
SHMT2-204ENST00000553324 SKIP12755 728 aa17.07■□□□□ 0.32
SHMT2-204ENST00000553324 CCT6AP40227 531 aaKnown RBP17.07■□□□□ 0.32
SHMT2-204ENST00000553324 NCBP1Q09161 790 aaKnown RBP17.07■□□□□ 0.32
SHMT2-204ENST00000553324 GRB10Q13322 594 aa17.07■□□□□ 0.32
SHMT2-204ENST00000553324 TFDP1Q14186 410 aa17.07■□□□□ 0.32
SHMT2-204ENST00000553324 KRT79Q5XKE5 535 aa17.07■□□□□ 0.32
SHMT2-204ENST00000553324 ARL6IP4Q66PJ3 421 aaKnown RBP17.07■□□□□ 0.32
SHMT2-204ENST00000553324 KCTD17Q8N5Z5 321 aa17.07■□□□□ 0.32
SHMT2-204ENST00000553324 MCPH1Q8NEM0 835 aa17.07■□□□□ 0.32
SHMT2-204ENST00000553324 CLP1Q92989 425 aaKnown RBP17.07■□□□□ 0.32
SHMT2-204ENST00000553324 C17orf80Q9BSJ5 609 aa17.07■□□□□ 0.32
SHMT2-204ENST00000553324 TRAIPQ9BWF2 469 aa17.07■□□□□ 0.32
SHMT2-204ENST00000553324 RC3H2Q9HBD1 1191 aaKnown RBP17.07■□□□□ 0.32
SHMT2-204ENST00000553324 IFT122Q9HBG6 1241 aa17.07■□□□□ 0.32
SHMT2-204ENST00000553324 MTUS1Q9ULD2 1270 aa17.07■□□□□ 0.32
SHMT2-204ENST00000553324 MTCH2Q9Y6C9 303 aa17.07■□□□□ 0.32
SHMT2-204ENST00000553324 MICAL3Q7RTP6 2002 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms